Rorug02G0380800

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011096
Physical Location & Seq
Forward (+)
48624500 .. 48625420
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0380800.1

Sequence Viewer

Length: 921 bp
ATGTTTATAACACTGGTTGACAATCCTGTACTAAAGCACTGGACCGGAGAAGATCTTGAAGTAACAATAATATCTGATGATGGTGAAAGGCAAAGGGTTACTGCAGACCTCAGTTCATTCAGTGCACAAATGATCAATGTGAAAATTATCAATTGCCCTGAGCTGAATGCATTGCCAAGAGACCTTTATCCGCAGAAACTGGAAATAGGTGGGTGTAGGTCCTTGAATGACCTCCCAAACGAAGACCATTCAGTACGGCTTCAGCATTTAGCACTGGATGCATGTCATGAAGATACACTGGTCACAAGGATACCTGCCGCCAGCATTTTACAGTCATTGGTGATTTCAAATATTACAAATCTCATCTGTCTTCCAAAATGGCCCTCTCTTCCCAGCCTCCAAGCACTGTATATCCGTGACTGTGAAGATCTAGAGTATCTGTCCAGCCAAGAAAACAGGATGTTTGAACGCTTCACCTGTCTCAAAGTACTCTCCATCCAGAACTGCCCTAAGCTTGTGGCACTGCCAGTTGAAGGGCTACCAACGTCTCTTCAATACTTGCGAATTGGCTCATGTGCAATGCTCCAGTCATTTGGCCCCCCGGATGTACTCCAGAAACTCGGTTCCCTCAATGATCTTTACATTGAAGATTGCCCTGCACTCCTGTCCTTGCCAGATAATGGCCTGTCAACAGCTCTCCTCCATCTATCTATTAAACAATGCCCCTTACTGATAGAAAGATGTGGACAGGAAGATGGTGATTTGCCAAAGATCAGGGACATCCCCGATCTGGAAATCCAAAAACCAACGACCGGACGTCCAACTTCAGCAGCTTGGTACCATCTTCCTAGGATCTGTGGAGGTATGTCTAATTTTATTTATGTTGTTCGAGTTGGTAGTTCAATAGATGATATACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

306

Amino Acids

34.03

Weight (kDa)

4.86

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 95 - 218 2.6e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AatII GACGTC 1 cut(s) 820
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 837
AccB1I GGYRCC 1 cut(s) 837
AccB7I CCANNNNNTGG 1 cut(s) 680
AciI CCGC 2 cut(s) 191, 318
AclWI GGATC 1 cut(s) 860
AcuI CTGAAG 2 cut(s) 245, 810
AcyI GRCGYC 1 cut(s) 817
AfaI GTAC 5 cut(s) 30, 255, 489, 609, 839
AfiI CCNNNNNNNGG 4 cut(s) 533, 680, 790, 812
AgsI TTSAA 8 cut(s) 59, 226, 348, 467, 533, 554, 647, 903
AhdI GACNNNNNGTC 1 cut(s) 816
AluBI AGCT 4 cut(s) 163, 514, 695, 833
AluI AGCT 4 cut(s) 163, 514, 695, 833
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 3 cut(s) 174, 485, 552
Alw44I GTGCAC 1 cut(s) 123
AlwI GGATC 1 cut(s) 860
AlwNI CAGNNNCTG 1 cut(s) 199
AoxI GGCC 3 cut(s) 380, 595, 682
ApaLI GTGCAC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 830
Asp718I GGTACC 1 cut(s) 837
AspA2I CCTAGG 1 cut(s) 848
AspS9I GGNCC 4 cut(s) 42, 219, 381, 596
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 4 cut(s) 95, 352, 466, 770
AvaII GGWCC 2 cut(s) 42, 219
AvrII CCTAGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanI GGYRCC 1 cut(s) 837
BbsI GAAGAC 2 cut(s) 249, 362
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 842
BccI CCATC 5 cut(s) 74, 503, 711, 749, 849
BceAI ACGGC 1 cut(s) 272
BciVI GTATCC 1 cut(s) 303
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 3 cut(s) 174, 485, 552
BfaI CTAG 2 cut(s) 431, 849
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 322
BfuI GTATCC 1 cut(s) 303
BglII AGATCT 2 cut(s) 52, 427
BisI GCNGC 2 cut(s) 318, 831
BlnI CCTAGG 1 cut(s) 848
BlsI GCNGC 2 cut(s) 319, 832
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 602
Bme18I GGWCC 2 cut(s) 42, 219
BmeRI GACNNNNNGTC 1 cut(s) 816
BmgT120I GGNCC 4 cut(s) 42, 219, 381, 596
BmiI GGNNCC 3 cut(s) 598, 625, 839
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 2 cut(s) 249, 362
BpmI CTGGAG 2 cut(s) 569, 596
Bpu10I CCTNAGC 2 cut(s) 159, 510
BpuMI CCSGG 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 817
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 600, 848
BsaWI WCCGGW 2 cut(s) 44, 812
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 680, 790, 812
Bse1I ACTGG 7 cut(s) 18, 44, 204, 279, 303, 527, 586
Bse3DI GCAATG 2 cut(s) 170, 585
BseDI CCNNGG 2 cut(s) 600, 848
BseGI GGATG 5 cut(s) 283, 465, 495, 610, 780
BseLI CCNNNNNNNGG 4 cut(s) 533, 680, 790, 812
BseMI GCAATG 2 cut(s) 170, 585
BseMII CTCAG 2 cut(s) 124, 150
BseNI ACTGG 7 cut(s) 18, 44, 204, 279, 303, 527, 586
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 842
BseYI CCCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 642
Bsh1285I CGRYCG 1 cut(s) 813
BshFI GGCC 3 cut(s) 382, 597, 684
BshNI GGYRCC 1 cut(s) 837
BsiEI CGRYCG 1 cut(s) 813
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 3 cut(s) 45, 602, 813
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 4 cut(s) 533, 680, 790, 812
BsmAI GTCTC 3 cut(s) 174, 485, 552
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 3 cut(s) 382, 597, 684
Bso31I GGTCTC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
BspACI CCGC 2 cut(s) 191, 318
BspANI GGCC 3 cut(s) 382, 597, 684
BspCNI CTCAG 2 cut(s) 123, 151
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 598, 625, 839
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 860
BspT107I GGYRCC 1 cut(s) 837
BspTNI GGTCTC 1 cut(s) 174
BsrDI GCAATG 2 cut(s) 170, 585
BsrI ACTGG 7 cut(s) 18, 44, 204, 279, 303, 527, 586
BssECI CCNNGG 2 cut(s) 600, 848
BssMI GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
BssNI GRCGYC 1 cut(s) 817
BssT1I CCWWGG 1 cut(s) 848
Bst4CI ACNGT 4 cut(s) 333, 408, 422, 918
Bst6I CTCTTC 2 cut(s) 393, 555
BstACI GRCGYC 1 cut(s) 817
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 110, 159, 510
BstF5I GGATG 5 cut(s) 283, 465, 495, 610, 780
BstKTI GATC 7 cut(s) 55, 135, 430, 637, 774, 790, 855
BstMAI GTCTC 3 cut(s) 174, 485, 552
BstMBI GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
BstMCI CGRYCG 1 cut(s) 813
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 842
BstV2I GAAGAC 2 cut(s) 249, 362
BstX2I RGATCY 3 cut(s) 52, 427, 852
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 3 cut(s) 52, 427, 852
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 3 cut(s) 382, 597, 684
BtsCI GGATG 5 cut(s) 283, 465, 495, 610, 780
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 7 cut(s) 11, 37, 127, 272, 296, 404, 521
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 4 cut(s) 42, 219, 381, 596
Csp6I GTAC 5 cut(s) 29, 254, 488, 608, 838
CviAII CATG 3 cut(s) 282, 287, 573
CviQI GTAC 5 cut(s) 29, 254, 488, 608, 838
DdeI CTNAG 3 cut(s) 110, 159, 510
DpnI GATC 7 cut(s) 54, 134, 429, 636, 773, 789, 854
DpnII GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
DriI GACNNNNNGTC 1 cut(s) 816
Eam1104I CTCTTC 2 cut(s) 393, 555
Eam1105I GACNNNNNGTC 1 cut(s) 816
EarI CTCTTC 2 cut(s) 393, 555
Eco130I CCWWGG 1 cut(s) 848
Eco31I GGTCTC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 42, 219
Eco57I CTGAAG 2 cut(s) 245, 810
EcoO109I RGGNCCY 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 848
EcoT22I ATGCAT 2 cut(s) 172, 283
ErhI CCWWGG 1 cut(s) 848
Esp3I CGTCTC 1 cut(s) 552
FaeI CATG 3 cut(s) 285, 290, 576
FaiI YATR 8 cut(s) 8, 283, 288, 411, 574, 866, 882, 914
FaqI GGGAC 1 cut(s) 791
FatI CATG 3 cut(s) 281, 286, 572
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 318, 831
FokI GGATG 5 cut(s) 290, 472, 482, 617, 767
Fsp4HI GCNGC 2 cut(s) 318, 831
FspBI CTAG 2 cut(s) 431, 849
GluI GCNGC 2 cut(s) 318, 831
GsaI CCCAGC 1 cut(s) 396
GsuI CTGGAG 2 cut(s) 569, 596
HaeIII GGCC 3 cut(s) 382, 597, 684
HapII CCGG 3 cut(s) 45, 602, 813
Hin1I GRCGYC 1 cut(s) 817
Hin1II CATG 3 cut(s) 285, 290, 576
HincII GTYRAC 2 cut(s) 19, 690
HindII GTYRAC 2 cut(s) 19, 690
HindIII AAGCTT 1 cut(s) 512
HpaII CCGG 3 cut(s) 45, 602, 813
HphI GGTGA 4 cut(s) 95, 352, 466, 770
Hpy166II GTNNAC 4 cut(s) 19, 125, 690, 746
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 6 cut(s) 56, 287, 431, 499, 613, 791
Hpy8I GTNNAC 4 cut(s) 19, 125, 690, 746
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 4 cut(s) 333, 408, 422, 918
HpyCH4IV ACGT 2 cut(s) 545, 817
HpyCH4V TGCA 6 cut(s) 104, 125, 170, 281, 578, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 3 cut(s) 110, 159, 510
HpySE526I ACGT 2 cut(s) 545, 817
Hsp92I GRCGYC 1 cut(s) 817
Hsp92II CATG 3 cut(s) 285, 290, 576
KpnI GGTACC 1 cut(s) 841
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 1 cut(s) 842
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 431, 849
MaeII ACGT 2 cut(s) 545, 817
MaeIII GTNAC 4 cut(s) 61, 97, 301, 416
MalI GATC 7 cut(s) 54, 134, 429, 636, 773, 789, 854
MboI GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 3 cut(s) 52, 427, 852
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 4 cut(s) 144, 151, 564, 871
MmeI TCCRAC 1 cut(s) 845
MnlI CCTC 7 cut(s) 119, 242, 394, 407, 638, 710, 854
Mph1103I ATGCAT 2 cut(s) 172, 283
MseI TTAA 1 cut(s) 714
MspI CCGG 3 cut(s) 45, 602, 813
MspR9I CCNGG 1 cut(s) 602
MunI CAATTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 602
NdeII GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
NlaIII CATG 3 cut(s) 285, 290, 576
NlaIV GGNNCC 3 cut(s) 598, 625, 839
NmuCI GTSAC 2 cut(s) 301, 416
NsiI ATGCAT 2 cut(s) 172, 283
NspI RCATGY 1 cut(s) 285
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 2 cut(s) 319, 832
PpuMI RGGWCCY 1 cut(s) 219
PsiI TTATAA 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 392
PspN4I GGNNCC 3 cut(s) 598, 625, 839
PspPI GGNCC 4 cut(s) 42, 219, 381, 596
PspPPI RGGWCCY 1 cut(s) 219
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 199
PsuI RGATCY 3 cut(s) 52, 427, 852
RsaI GTAC 5 cut(s) 30, 255, 489, 609, 839
RsaNI GTAC 5 cut(s) 29, 254, 488, 608, 838
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 2 cut(s) 318, 831
Sau3AI GATC 7 cut(s) 52, 132, 427, 634, 771, 787, 852
Sau96I GGNCC 4 cut(s) 42, 219, 381, 596
ScaI AGTACT 1 cut(s) 489
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 42, 219
Sse9I AATT 4 cut(s) 144, 151, 564, 871
SsiI CCGC 2 cut(s) 191, 318
SspI AATATT 1 cut(s) 352
SspMI CTAG 2 cut(s) 431, 849
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 4 cut(s) 333, 408, 422, 918
TaiI ACGT 2 cut(s) 548, 820
TaqI TCGA 1 cut(s) 889
TasI AATT 4 cut(s) 144, 151, 564, 871
TatI WGTACW 3 cut(s) 28, 487, 607
TauI GCSGC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 7 cut(s) 18, 44, 127, 279, 303, 411, 528
TseFI GTSAC 2 cut(s) 301, 416
TseI GCWGC 1 cut(s) 830
Tsp45I GTSAC 2 cut(s) 301, 416
TspDTI ATGAA 2 cut(s) 105, 303
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 7 cut(s) 18, 44, 127, 279, 303, 411, 528
Van91I CCANNNNNTGG 1 cut(s) 680
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 42, 219
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 1 cut(s) 285
XmaJI CCTAGG 1 cut(s) 848
XspI CTAG 2 cut(s) 431, 849
ZraI GACGTC 1 cut(s) 818
ZrmI AGTACT 1 cut(s) 489
Zsp2I ATGCAT 2 cut(s) 172, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.