Rmu_co8058466.1_g000001

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8058466.1
OG0011096
Physical Location & Seq
Reverse (-)
2 .. 464
463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8058466.1_g000001.1.cds

Sequence Viewer

Length: 463 bp
atgagcatcactagtggcagcatcgtcactagaacatcatccccaacaacacccaactcctcctcctcctcctcttcgaccaaaggcaacggcaacacccaggcctgcgccgcctgcaagtaccagcgccggaagtgcgcccccgactgcatactcgccccttatttccctcacgaccggcagcgccagttcctcaacgcccacaagctcttcggcgtcagcaacatcaccaagatcatcaaacacctcgaccaccacgataaggaggaggccatgcgcaccatcattttccagtccgacgtccgcgcctccgaccccgtcggcggctgctaccggatcatccaggaactccagcgcctcatcgagtacaacaaggccgagctcgacatcgtcctccaccaactcgccatctgccgagcacaggcacagcagcaacagcagcccataatgcagcagattccgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

154

Amino Acids

17.27

Weight (kDa)

9.15

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
Acc16I TGCGCA 1 cut(s) 278
AccII CGCG 1 cut(s) 306
AciI CCGC 3 cut(s) 111, 304, 324
AclWI GGATC 1 cut(s) 344
AcyI GRCGYC 2 cut(s) 216, 300
AfaI GTAC 2 cut(s) 122, 368
AfiI CCNNNNNNNGG 3 cut(s) 262, 323, 421
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 99, 342
AluBI AGCT 2 cut(s) 208, 382
AluI AGCT 2 cut(s) 208, 382
Alw21I GWGCWC 2 cut(s) 384, 421
AlwI GGATC 1 cut(s) 344
AoxI GGCC 3 cut(s) 102, 270, 375
ApeKI GCWGC 6 cut(s) 18, 181, 327, 430, 439, 451
AspLEI GCGC 7 cut(s) 110, 129, 140, 186, 279, 308, 357
AsuHPI GGTGA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 384, 421
BbvI GCAGC 5 cut(s) 30, 193, 314, 442, 451
BccI CCATC 2 cut(s) 290, 416
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 101, 344
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 30
BfoI RGCGCY 3 cut(s) 130, 187, 358
BisI GCNGC 8 cut(s) 19, 111, 182, 325, 328, 431, 440, 452
BlsI GCNGC 8 cut(s) 20, 112, 183, 326, 329, 432, 441, 453
Bme1390I CCNGG 2 cut(s) 101, 344
BmrFI CCNGG 2 cut(s) 101, 344
BmsI GCATC 2 cut(s) 15, 30
BpmI CTGGAG 1 cut(s) 335
BsaHI GRCGYC 2 cut(s) 216, 300
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 323, 421
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 187, 292
BseBI CCWGG 2 cut(s) 101, 344
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 38, 339
BseLI CCNNNNNNNGG 3 cut(s) 262, 323, 421
BseNI ACTGG 2 cut(s) 187, 292
BseRI GAGGAG 6 cut(s) 49, 52, 55, 58, 61, 281
BseXI GCAGC 5 cut(s) 30, 193, 314, 442, 451
Bsh1236I CGCG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 3 cut(s) 104, 272, 377
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 384, 421
BsiSI CCGG 4 cut(s) 130, 178, 334, 461
BslI CCNNNNNNNGG 3 cut(s) 262, 323, 421
BsnI GGCC 3 cut(s) 104, 272, 377
Bsp1286I GDGCHC 2 cut(s) 384, 421
Bsp143I GATC 2 cut(s) 234, 336
BspACI CCGC 3 cut(s) 111, 304, 324
BspANI GGCC 3 cut(s) 104, 272, 377
BspFNI CGCG 1 cut(s) 306
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 2 cut(s) 187, 292
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 234, 336
BssNI GRCGYC 2 cut(s) 216, 300
Bst2UI CCWGG 2 cut(s) 101, 344
Bst6I CTCTTC 2 cut(s) 79, 215
BstACI GRCGYC 2 cut(s) 216, 300
BstC8I GCNNGC 2 cut(s) 106, 115
BstF5I GGATG 2 cut(s) 38, 339
BstFNI CGCG 1 cut(s) 306
BstH2I RGCGCY 3 cut(s) 130, 187, 358
BstHHI GCGC 7 cut(s) 110, 129, 140, 186, 279, 308, 357
BstKTI GATC 2 cut(s) 237, 339
BstMBI GATC 2 cut(s) 234, 336
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 6 cut(s) 110, 114, 135, 436, 439, 448
BstNI CCWGG 2 cut(s) 101, 344
BstSCI CCNGG 2 cut(s) 99, 342
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 5 cut(s) 30, 193, 314, 442, 451
BsuRI GGCC 3 cut(s) 104, 272, 377
BtsCI GGATG 2 cut(s) 38, 339
Cac8I GCNNGC 2 cut(s) 106, 115
CfoI GCGC 7 cut(s) 110, 129, 140, 186, 279, 308, 357
Cfr10I RCCGGY 1 cut(s) 177
CseI GACGC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 121, 367
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 104, 208, 272, 327, 377, 382, 442
CviKI_1 RGCY 7 cut(s) 104, 208, 272, 327, 377, 382, 442
CviQI GTAC 2 cut(s) 121, 367
DpnI GATC 2 cut(s) 236, 338
DpnII GATC 2 cut(s) 234, 336
Eam1104I CTCTTC 2 cut(s) 79, 215
EarI CTCTTC 2 cut(s) 79, 215
Ecl136II GAGCTC 1 cut(s) 382
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 99, 342
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 1 cut(s) 277
FaiI YATR 3 cut(s) 152, 275, 446
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 8 cut(s) 19, 111, 182, 325, 328, 431, 440, 452
FokI GGATG 2 cut(s) 25, 326
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 8 cut(s) 19, 111, 182, 325, 328, 431, 440, 452
FspAI RTGCGCAY 1 cut(s) 278
FspBI CTAG 2 cut(s) 12, 30
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 7 cut(s) 109, 128, 139, 185, 278, 307, 356
GluI GCNGC 8 cut(s) 19, 111, 182, 325, 328, 431, 440, 452
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 3 cut(s) 130, 187, 358
HaeIII GGCC 3 cut(s) 104, 272, 377
HapII CCGG 4 cut(s) 130, 178, 334, 461
HgaI GACGC 1 cut(s) 205
HhaI GCGC 7 cut(s) 110, 129, 140, 186, 279, 308, 357
Hin1I GRCGYC 2 cut(s) 216, 300
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 7 cut(s) 108, 127, 138, 184, 277, 306, 355
HinP1I GCGC 7 cut(s) 108, 127, 138, 184, 277, 306, 355
HinfI GANTC 1 cut(s) 457
HpaII CCGG 4 cut(s) 130, 178, 334, 461
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 298, 313
Hpy188III TCNNGA 1 cut(s) 173
Hpy99I CGWCG 2 cut(s) 302, 323
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 117, 150, 451
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 114, 135, 436, 439, 448
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 216, 300
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 7 cut(s) 108, 127, 138, 184, 277, 306, 355
Kzo9I GATC 2 cut(s) 234, 336
LguI GCTCTTC 1 cut(s) 215
Lsp1109I GCAGC 5 cut(s) 30, 193, 314, 442, 451
LweI GCATC 2 cut(s) 15, 30
MaeI CTAG 2 cut(s) 12, 30
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 236, 338
MboI GATC 2 cut(s) 234, 336
MboII GAAGA 2 cut(s) 66, 202
MhlI GDGCHC 2 cut(s) 384, 421
MmeI TCCRAC 2 cut(s) 321, 336
MspI CCGG 4 cut(s) 130, 178, 334, 461
MspR9I CCNGG 2 cut(s) 101, 344
MvaI CCWGG 2 cut(s) 101, 344
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 6 cut(s) 110, 114, 135, 436, 439, 448
NdeII GATC 2 cut(s) 234, 336
NlaIII CATG 1 cut(s) 277
NmeAIII GCCGAG 2 cut(s) 403, 440
NmuCI GTSAC 1 cut(s) 25
NsbI TGCGCA 1 cut(s) 278
PceI AGGCCT 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 1 cut(s) 457
PflFI GACNNNGTC 2 cut(s) 317, 389
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 8 cut(s) 20, 112, 183, 326, 329, 432, 441, 453
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 99, 342
PspGI CCWGG 2 cut(s) 99, 342
PsyI GACNNNGTC 2 cut(s) 317, 389
RsaI GTAC 2 cut(s) 122, 368
RsaNI GTAC 2 cut(s) 121, 367
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 215
SatI GCNGC 8 cut(s) 19, 111, 182, 325, 328, 431, 440, 452
Sau3AI GATC 2 cut(s) 234, 336
ScrFI CCNGG 2 cut(s) 101, 344
SduI GDGCHC 2 cut(s) 384, 421
SetI ASST 4 cut(s) 210, 249, 303, 384
SfaNI GCATC 2 cut(s) 15, 30
SpeI ACTAGT 1 cut(s) 11
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 3 cut(s) 111, 304, 324
SspMI CTAG 2 cut(s) 12, 30
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 99, 342
TaiI ACGT 1 cut(s) 303
TaqI TCGA 4 cut(s) 77, 249, 363, 384
TatI WGTACW 1 cut(s) 366
TauI GCSGC 2 cut(s) 113, 327
TfiI GAWTC 1 cut(s) 457
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 6 cut(s) 18, 181, 327, 430, 439, 451
Tsp45I GTSAC 1 cut(s) 25
Tth111I GACNNNGTC 2 cut(s) 317, 389
XspI CTAG 2 cut(s) 12, 30
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.