FvH4_6g33490

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011096
Physical Location & Seq
Reverse (-)
26519663 .. 26521607
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33490.t1

Sequence Viewer

Length: 984 bp
ATGAGCATCACTAGTGGCAGCGTCGTCACTACAACCTCATCCCCAACCACACCCAACTCCTCCTCCTCTTCGACCAAAGGCAACGGCAACACCCAGGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGCCCCCGACTGCATCCTCGCCCCTTTTTTCCCTCACGACCGCCAGCACCAGTTCCTCCACGCCCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAAACACTCAACCACTTTGAAAAGGAGACGGCCATGCGCACCATCATCTTCCAGTCCGACGTCCGCGCATCCGACCCCGTCGGCGGATGCTACCGCATCATCCAGGAACTACAGCGCCTCATCGACTACAACAAGGCCGAGCTCGACATCGTCCTTCACCAACTCGCCATCTGCCGAGCACAGGCACAGCAACAACACCAGCAGCAGCCCATAATGCAGCAGATTCCGGAGGTCGGAGATACGACCTGCGCCGATCAGATGATTAGTGTCGATCCGTTGAGCCTGTACGGAAACCCTATGCATTTTCATTATCTTCAGCCGCAGCAGCCGCATAATGTGCAAGTTACGGAACAACCAGATCAGGGTGCGCCTTATGTGTTCATGCAAAATAGTAATGGGAATGTGAATCAGCATATGGTACCGGAGGATATGAACATGTGGGCTATGCAGGATTCTATGTCGTCATTGCATATCAAGCATGGGATGAGTCCCGGTGATTGTGAAGATATCAAGCCCTTTGTTGACATTCCCTGTGATGATGATCAAAGGAATCATGAGATCAAGTTCCAGCCTGATGCAATTGGTGACCAGAGTGATGATGCATTGTTGAAGATAGAAAATGGCAATTTAAAAGAAGATCAGCAGAGCGAGTCAGCTGCCCAACAAGTCCATCATCATCATCATCAGGATCATGGTGATCTGAAAGGTGAAGCTAGTTTGTTCATGACACTCACAAATTGTAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

328

Amino Acids

36.64

Weight (kDa)

5.65

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 33 - 128 6.4e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
Acc16I TGCGCA 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 488
Acc65I GGTACC 1 cut(s) 652
AccB1I GGYRCC 1 cut(s) 652
AccII CGCG 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 8 cut(s) 105, 124, 172, 298, 318, 328, 554, 563
AclWI GGATC 2 cut(s) 500, 930
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 2 cut(s) 210, 294
AfaI GTAC 3 cut(s) 116, 521, 654
AfiI CCNNNNNNNGG 4 cut(s) 317, 415, 467, 596
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 2 cut(s) 254, 844
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 93, 336
AluBI AGCT 4 cut(s) 202, 376, 890, 947
AluI AGCT 4 cut(s) 202, 376, 890, 947
Alw21I GWGCWC 2 cut(s) 378, 415
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 500, 930
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 3 cut(s) 96, 264, 369
ApeKI GCWGC 7 cut(s) 18, 436, 439, 451, 556, 559, 890
Asp718I GGTACC 1 cut(s) 652
AspLEI GCGC 7 cut(s) 104, 134, 273, 302, 351, 485, 604
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 6 cut(s) 214, 383, 740, 830, 941, 953
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 378
Bbv12I GWGCWC 2 cut(s) 378, 415
BbvI GCAGC 7 cut(s) 30, 448, 451, 463, 568, 571, 877
BccI CCATC 3 cut(s) 284, 410, 912
BceAI ACGGC 2 cut(s) 100, 279
BcgI CGANNNNNNTGC 2 cut(s) 872, 906
BciT130I CCWGG 2 cut(s) 95, 338
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 948
BfmI CTRYAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 352
BfuAI ACCTGC 1 cut(s) 488
Bme1390I CCNGG 3 cut(s) 95, 338, 726
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 3 cut(s) 95, 338, 726
BmsI GCATC 7 cut(s) 15, 153, 311, 311, 339, 799, 823
BpuMI CCSGG 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 774
BsaHI GRCGYC 2 cut(s) 210, 294
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 2 cut(s) 460, 655
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 415, 467, 596
Bse1I ACTGG 2 cut(s) 181, 286
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 95, 338
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 6 cut(s) 38, 144, 302, 326, 333, 723
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 4 cut(s) 317, 415, 467, 596
BseMI GCAATG 1 cut(s) 698
BseNI ACTGG 2 cut(s) 181, 286
BseRI GAGGAG 3 cut(s) 49, 52, 55
BseXI GCAGC 7 cut(s) 30, 448, 451, 463, 568, 571, 877
Bsh1236I CGCG 1 cut(s) 300
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 98, 266, 371
BshNI GGYRCC 1 cut(s) 652
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 378, 415
BsiSI CCGG 3 cut(s) 461, 656, 726
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 4 cut(s) 317, 415, 467, 596
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 3 cut(s) 98, 266, 371
Bsp1286I GDGCHC 2 cut(s) 378, 415
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
BspACI CCGC 8 cut(s) 105, 124, 172, 298, 318, 328, 554, 563
BspANI GGCC 3 cut(s) 98, 266, 371
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 1 cut(s) 300
BspHI TCATGA 2 cut(s) 787, 957
BspLI GGNNCC 1 cut(s) 654
BspMI ACCTGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 500, 930
BspQI GCTCTTC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 698
BsrI ACTGG 2 cut(s) 181, 286
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
BssNI GRCGYC 2 cut(s) 210, 294
Bst2UI CCWGG 2 cut(s) 95, 338
Bst6I CTCTTC 2 cut(s) 73, 209
BstACI GRCGYC 2 cut(s) 210, 294
BstAPI GCANNNNNTGC 1 cut(s) 571
BstC8I GCNNGC 3 cut(s) 100, 109, 176
BstEII GGTNACC 1 cut(s) 818
BstF5I GGATG 6 cut(s) 38, 144, 302, 326, 333, 723
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 7 cut(s) 104, 134, 273, 302, 351, 485, 604
BstKTI GATC 9 cut(s) 231, 490, 508, 595, 778, 795, 874, 925, 934
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 8 cut(s) 104, 108, 129, 448, 559, 562, 571, 709
BstNI CCWGG 2 cut(s) 95, 338
BstNSI RCATGY 1 cut(s) 673
BstPI GGTNACC 1 cut(s) 818
BstSCI CCNGG 3 cut(s) 93, 336, 724
BstSFI CTRYAG 1 cut(s) 344
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 7 cut(s) 30, 448, 451, 463, 568, 571, 877
BsuRI GGCC 3 cut(s) 98, 266, 371
BtsCI GGATG 6 cut(s) 38, 144, 302, 326, 333, 723
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 3 cut(s) 100, 109, 176
CciI TCATGA 2 cut(s) 787, 957
CfoI GCGC 7 cut(s) 104, 134, 273, 302, 351, 485, 604
CseI GACGC 2 cut(s) 10, 199
Csp6I GTAC 3 cut(s) 115, 520, 653
CviAII CATG 7 cut(s) 268, 616, 670, 713, 788, 926, 958
CviQI GTAC 3 cut(s) 115, 520, 653
DpnI GATC 9 cut(s) 230, 489, 507, 594, 777, 794, 873, 924, 933
DpnII GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
DraI TTTAAA 1 cut(s) 864
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 73, 209
EarI CTCTTC 2 cut(s) 73, 209
EciI GGCGGA 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 376
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 533
Eco91I GGTNACC 1 cut(s) 818
EcoICRI GAGCTC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 93, 336
EcoRV GATATC 1 cut(s) 742
EcoT22I ATGCAT 2 cut(s) 537, 838
EcoT38I GRGCYC 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 7 cut(s) 271, 619, 673, 716, 791, 929, 961
FaqI GGGAC 1 cut(s) 708
FatI CATG 7 cut(s) 267, 615, 669, 712, 787, 925, 957
FauNDI CATATG 1 cut(s) 648
FbaI TGATCA 1 cut(s) 775
FokI GGATG 6 cut(s) 25, 131, 289, 320, 333, 730
FriOI GRGCYC 1 cut(s) 378
FspAI RTGCGCAY 1 cut(s) 272
FspBI CTAG 2 cut(s) 12, 948
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 7 cut(s) 103, 133, 272, 301, 350, 484, 603
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 3 cut(s) 98, 266, 371
HapII CCGG 3 cut(s) 461, 656, 726
HgaI GACGC 2 cut(s) 10, 199
HhaI GCGC 7 cut(s) 104, 134, 273, 302, 351, 485, 604
Hin1I GRCGYC 2 cut(s) 210, 294
Hin1II CATG 7 cut(s) 271, 619, 673, 716, 791, 929, 961
Hin6I GCGC 7 cut(s) 102, 132, 271, 300, 349, 483, 602
HinP1I GCGC 7 cut(s) 102, 132, 271, 300, 349, 483, 602
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 6 cut(s) 457, 640, 686, 721, 784, 884
HpaII CCGG 3 cut(s) 461, 656, 726
HphI GGTGA 6 cut(s) 214, 383, 740, 830, 941, 953
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 5 cut(s) 292, 307, 470, 492, 936
Hpy188III TCNNGA 5 cut(s) 167, 461, 788, 920, 958
Hpy8I GTNNAC 1 cut(s) 757
Hpy99I CGWCG 3 cut(s) 26, 296, 317
HpyAV CCTTC 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 108, 129, 448, 559, 562, 571, 709
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 210, 294
Hsp92II CATG 7 cut(s) 271, 619, 673, 716, 791, 929, 961
HspAI GCGC 7 cut(s) 102, 132, 271, 300, 349, 483, 602
Kpn2I TCCGGA 1 cut(s) 460
KpnI GGTACC 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
LguI GCTCTTC 1 cut(s) 209
Lsp1109I GCAGC 7 cut(s) 30, 448, 451, 463, 568, 571, 877
LweI GCATC 7 cut(s) 15, 153, 311, 311, 339, 799, 823
MaeI CTAG 2 cut(s) 12, 948
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 25, 577, 818
MalI GATC 9 cut(s) 230, 489, 507, 594, 777, 794, 873, 924, 933
MboI GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
MboII GAAGA 7 cut(s) 60, 196, 274, 539, 749, 856, 881
MfeI CAATTG 1 cut(s) 813
MhlI GDGCHC 2 cut(s) 378, 415
MluCI AATT 3 cut(s) 813, 859, 970
MlyI GAGTC 2 cut(s) 730, 893
MmeI TCCRAC 3 cut(s) 315, 330, 448
Mph1103I ATGCAT 2 cut(s) 537, 838
MroI TCCGGA 1 cut(s) 460
MseI TTAA 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 3 cut(s) 461, 656, 726
MspR9I CCNGG 3 cut(s) 95, 338, 726
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 2 cut(s) 95, 338
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 8 cut(s) 104, 108, 129, 448, 559, 562, 571, 709
NciI CCSGG 1 cut(s) 726
NdeI CATATG 1 cut(s) 648
NdeII GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
NlaIII CATG 7 cut(s) 271, 619, 673, 716, 791, 929, 961
NlaIV GGNNCC 1 cut(s) 654
NmeAIII GCCGAG 2 cut(s) 397, 434
NmuCI GTSAC 2 cut(s) 25, 818
NsbI TGCGCA 1 cut(s) 272
NsiI ATGCAT 2 cut(s) 537, 838
NspI RCATGY 1 cut(s) 673
PagI TCATGA 2 cut(s) 787, 957
PceI AGGCCT 1 cut(s) 98
PciI ACATGT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 209
PfeI GAWTC 4 cut(s) 457, 640, 686, 784
PflFI GACNNNGTC 2 cut(s) 311, 383
PfoI TCCNGGA 1 cut(s) 336
PleI GAGTC 2 cut(s) 729, 892
PpsI GAGTC 2 cut(s) 729, 892
PscI ACATGT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 93, 336
PspEI GGTNACC 1 cut(s) 818
PspGI CCWGG 2 cut(s) 93, 336
PspN4I GGNNCC 1 cut(s) 654
PsyI GACNNNGTC 2 cut(s) 311, 383
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 3 cut(s) 116, 521, 654
RsaNI GTAC 3 cut(s) 115, 520, 653
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 863
Sau3AI GATC 9 cut(s) 228, 487, 505, 592, 775, 792, 871, 922, 931
SchI GAGTC 2 cut(s) 730, 893
ScrFI CCNGG 3 cut(s) 95, 338, 726
SduI GDGCHC 2 cut(s) 378, 415
SetI ASST 9 cut(s) 38, 204, 297, 378, 468, 482, 892, 943, 949
SfaNI GCATC 7 cut(s) 15, 153, 311, 311, 339, 799, 823
SfcI CTRYAG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 813, 859, 970
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 8 cut(s) 105, 124, 172, 298, 318, 328, 554, 563
SspMI CTAG 2 cut(s) 12, 948
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 3 cut(s) 93, 336, 724
TaiI ACGT 1 cut(s) 297
TaqI TCGA 4 cut(s) 71, 357, 378, 504
TasI AATT 3 cut(s) 813, 859, 970
TauI GCSGC 4 cut(s) 107, 126, 556, 565
TfiI GAWTC 4 cut(s) 457, 640, 686, 784
Tru1I TTAA 1 cut(s) 863
Tru9I TTAA 1 cut(s) 863
TseFI GTSAC 2 cut(s) 25, 818
TseI GCWGC 7 cut(s) 18, 436, 439, 451, 556, 559, 890
Tsp45I GTSAC 2 cut(s) 25, 818
TspDTI ATGAA 4 cut(s) 530, 604, 680, 946
TspGWI ACGGA 3 cut(s) 498, 537, 596
Tth111I GACNNNGTC 2 cut(s) 311, 383
XceI RCATGY 1 cut(s) 673
XspI CTAG 2 cut(s) 12, 948
ZraI GACGTC 1 cut(s) 295
Zsp2I ATGCAT 2 cut(s) 537, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.