Rmu_co8024774.1_g000001

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8024774.1
OG0011096
Physical Location & Seq
Reverse (-)
1 .. 521
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8024774.1_g000001.1.cds

Sequence Viewer

Length: 299 bp
atgcattttcattatcttcagcagcagcctaatgtgcaagttactgggcagcaggatcagggtgccccctatttgtttgtgcaaaatactaatgggaataatgggcaccagcagcagcatatggtaccggaggatatgaacatgtgggctatgcaggattccatgtcgtcgttgcatattaagcatgggatgaatgccggtgactgtgaagatatcaagccctttgttgacattgcctgtgatgatgatcagaggaatcatgagatcaagttccagcctgatgcaattggcgaccagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

99

Amino Acids

11.34

Weight (kDa)

4.67

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 124
AccB1I GGYRCC 3 cut(s) 62, 105, 124
AclWI GGATC 1 cut(s) 63
AfaI GTAC 1 cut(s) 126
AflIII ACRYGT 1 cut(s) 141
AlwI GGATC 1 cut(s) 63
ApeKI GCWGC 5 cut(s) 22, 25, 49, 112, 115
Asp718I GGTACC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 212
BaeGI GKGCMC 2 cut(s) 67, 108
BanI GGYRCC 3 cut(s) 62, 105, 124
BbvI GCAGC 5 cut(s) 34, 37, 61, 124, 127
BclI TGATCA 1 cut(s) 247
BisI GCNGC 5 cut(s) 23, 26, 50, 113, 116
BlsI GCNGC 5 cut(s) 24, 27, 51, 114, 117
BmiI GGNNCC 3 cut(s) 64, 107, 126
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 246
BseGI GGATG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 246
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 2 cut(s) 67, 108
BseXI GCAGC 5 cut(s) 34, 37, 61, 124, 127
BshNI GGYRCC 3 cut(s) 62, 105, 124
BsiSI CCGG 2 cut(s) 128, 198
BsmI GAATGC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 67, 108
Bsp143I GATC 3 cut(s) 55, 247, 264
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 64, 107, 126
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 3 cut(s) 62, 105, 124
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 3 cut(s) 55, 247, 264
Bst4CI ACNGT 1 cut(s) 206
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 3 cut(s) 58, 250, 267
BstMBI GATC 3 cut(s) 55, 247, 264
BstMWI GCNNNNNNNGC 3 cut(s) 34, 112, 181
BstNSI RCATGY 1 cut(s) 145
BstSLI GKGCMC 2 cut(s) 67, 108
BstV1I GCAGC 5 cut(s) 34, 37, 61, 124, 127
BtsCI GGATG 1 cut(s) 195
CciI TCATGA 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 197
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 142, 163, 185, 260
CviJI RGCY 4 cut(s) 28, 149, 220, 277
CviKI_1 RGCY 4 cut(s) 28, 149, 220, 277
CviQI GTAC 1 cut(s) 125
DpnI GATC 3 cut(s) 57, 249, 266
DpnII GATC 3 cut(s) 55, 247, 264
Eco32I GATATC 1 cut(s) 214
EcoRV GATATC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 145, 166, 188, 263
FaiI YATR 9 cut(s) 120, 122, 137, 143, 152, 164, 177, 186, 261
FatI CATG 4 cut(s) 141, 162, 184, 259
FauNDI CATATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 23, 26, 50, 113, 116
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 5 cut(s) 23, 26, 50, 113, 116
GluI GCNGC 5 cut(s) 23, 26, 50, 113, 116
HapII CCGG 2 cut(s) 128, 198
Hin1II CATG 4 cut(s) 145, 166, 188, 263
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 158, 256
HpaII CCGG 2 cut(s) 128, 198
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 6 cut(s) 4, 37, 82, 154, 175, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 112, 181
Hsp92II CATG 4 cut(s) 145, 166, 188, 263
KpnI GGTACC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 55, 247, 264
Lsp1109I GCAGC 5 cut(s) 34, 37, 61, 124, 127
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 40, 200
MalI GATC 3 cut(s) 57, 249, 266
MboI GATC 3 cut(s) 55, 247, 264
MboII GAAGA 2 cut(s) 8, 221
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 67, 108
MluCI AATT 1 cut(s) 285
MnlI CCTC 2 cut(s) 124, 246
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 180
MspI CCGG 2 cut(s) 128, 198
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 34, 112, 181
NdeI CATATG 1 cut(s) 120
NdeII GATC 3 cut(s) 55, 247, 264
NlaIII CATG 4 cut(s) 145, 166, 188, 263
NlaIV GGNNCC 3 cut(s) 64, 107, 126
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 145
PagI TCATGA 1 cut(s) 259
PciI ACATGT 1 cut(s) 141
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 158, 256
PkrI GCNGC 5 cut(s) 24, 27, 51, 114, 117
PscI ACATGT 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 64, 107, 126
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 5 cut(s) 23, 26, 50, 113, 116
Sau3AI GATC 3 cut(s) 55, 247, 264
SduI GDGCHC 2 cut(s) 67, 108
SfaNI GCATC 1 cut(s) 271
Sse9I AATT 1 cut(s) 285
TaaI ACNGT 1 cut(s) 206
TasI AATT 1 cut(s) 285
TfiI GAWTC 2 cut(s) 158, 256
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 5 cut(s) 22, 25, 49, 112, 115
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 152, 206
XceI RCATGY 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.