Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003542

Physical Location & Seq

Genomic Coordinates Forward (+)

4585684 .. 4591035

Gene Structure 5352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3732 bp

ATGGGGCGTCGTAGAATAAGATCAAGGATCCGGAAAAGCCATTTCTACACCTTTAAATGTCTCAGACCAAAAACCCTAGAAGATCAAGGACCTCATATCATTAATGGACCTGGATACACGAGAATTGTTCATTGTAACCAACCTCATTTGCATTTGGCTAAAGTCCTTAGGTACACTTCAAATTATGTGTCCACCACTAGGTATAATCTCATTACTTTCTTGCCCAAATGCTTGTATGAGCAGTTCCACCGTGTTGCCAATTTCTACTTCCTCGTTGCTGCTATTCTCTCTGTCTTTCCTCTCTCCCCATTCAACAAATGGAGTATGATCGCTCCTTTGATTTTTGTGGTTGGGCTTAGTATGGGTAAAGAGGCGTTGGAGGATTGGCGGAGGTTTATGCAGGATGTGAAGGTGAATTCGAGGAAAGCTACTGTTCACAGAGGGGATGGTGATTTTGGTCGTAGGAAGTGGAAGAAGTTACGTGTAGGGGATGTTGTAAAGGTGGAAAAGGATCAATTTTTCCCTGCTGATTTGCTCTTATTGTCATCTAGTTATGAGGATGGGATCTGTTATGTGGAGACGATGAACTTAGATGGTGAAACCAACTTGAAAGTGAAAAGATGTTTGGATGTTACTTTGCCTTTGGAACGGGATGATACTTTCCAGAGTTTCTCCGGAACTATCAAATGTGAAGATCCCAATCCTAACCTCTATACCTTTGTTGGAAATCTTGAATATGACGGTCAGGTTTATCCGCTTGATCCTAGCCAGATTCTCTTGAGAGACTCAAAGCTCAGGAACACGTCTTATGTCTATGGGGTGGTGGTTTTTACTGGCCATGACACCAAAGTCATGCAGAATTCAACAAAATCCCCTTCAAAGAGAAGCAGAATCGAGAAGAGAATGGACTACATTATATATACTCTCTTTGCCCTCCTTGTGCTTGTCTCCTTCATCAGCTCATTGGGTTTTGCAGTGATGACAAAAATGCATATGGGAGATTGGTGGTACTTACGACCGGATAAGCCTGAGCGGTTAACAAATCCAAGAAATCCTTTTCACGCTTGGGTCGTCCATCTGATCACTGCTGTCTTGCTTTATGGGTACTTGATTCCCATCTCATTGTATGTTTCCATCGAGCTCGTAAAAGTTTTGCAGGCAACTTTCATAAACCAAGACTTGCAGATGTATGACAGCGAGAGTGGGACTCCAGCTCAAGCACGTACATCGAATTTAAATGAAGAGCTGGGACAAGTTGACACAATCCTTTCCGATAAAACTGGAACTTTGACTTGTAACCAGATGGATTTTCTGAAATGCTCCATTGCGGGTACTTCTTATGGTGTTCGAGCCAGTGAAGTGGAACTAGCTGCTGCAAAACAAATGGCGATAGATCTCGACGAGGAGCAAGGTGAGGAAGTGACCCACCTTCCAAGGACTAGAGGAAGGATGCATGGATATGCTAAAATGCCCAGCAAGACATCATCAGATATTGAGTTGGAGACTGTAATCACTGCTACTGACGAAGGGGATCAGACCCAGTCCACTGGTATCAAGGGTTTTAGTTTTGAGGATCAACGTCTCATGGGTGGAAACTGGTTAAATGAACCTAATTCAGATGACATTTTGATGTTTCTGCGTATACTTGCGGTTTGTCACACTGCTATCCCCGAGGTGGATGAAGATACTGGAAAGTGTACTTATGAAGCAGAGTCTCCTGACGAAGTTGCTTTCCTTGTTGCCGCTGGGGAGTTTGGTTTTGAGTTTACTAAAAGAACTCAATCAAGTGTGTTTATCAGTGAACGACATTCAGGCCAACCAGTTGAAAGAGAATATAAAGTTTTAAATGTTTTGGACTTCACTAGCAAAAGAAAAAGAATGTCTGTTATCGTCCGTGATGAAAAAGGACAGATTCTTCTACTCTGTAAAGGTGCTGACAGCATAATATTTGAACGGTTATCCAAGAATGGAAAAAATTATCTGGAAGCCACTTCAAAGCATTTGAATGGATACGGTGAAGCTGGTTTACGCACATTGGCACTCAGTTATAGAAAGCTGGATGAGACCGAGTATTCGATATGGAACAGTGAATTTCACAAAGCCAAAACTTCAGTCGGAGCTGACAGAGATGAAATGCTCGAAAAGGTATCTGACATGATGGAGAAGGAATTGATTCTTGTCGGTGCTACTGCAGTGGAAGACAAACTGCAGAAAGGGGTGCCTCAATGCATAGATAAACTTGCCCAAGCTGGTCTTAAGATATGGGTTTTGACAGGAGATAAGATGGAGACAGCAATTAACATAGGATATGCCTGCAGTTTGCTGAGACAGGGTATGAAGCAGATATACATAGCTCTAAGAAATGAAGAGGGATCATCCCAAGACCCAGAAGCAGCTGCGAGAGAGAACATTTTGATGCAAATCATAAATGCTTCACAGATGATCAAACTAGAGAAGGATCCACATGCAGCGTTTGCTTTGATCATTGATGGAAAGACACTTACATATGCTTTGGAGGATGATATTAAGTATCAGTTTCTTGCCCTGGCAGTTGACTGTGCTTCAGTGATATGCTGTCGTGTCTCTCCCAAGCAGAAAGCGCTTGTAACAAGACTAGCAAAAGAAGGAACAGGAAAGACGACCTTGGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCCGATATAGGTGTAGGCATCAGTGGCGTGGAAGGCATGCAGGCTGTAATGGCAAGCGACTTCTCCATAGCCCAATTTCGGTTTCTAGAGAGACTACTTGTTGTCCATGGGCACTGGTGCTACAAAAGAATAGCCCAGATGATCTGTTACTTCTTCTACAAGAACATAACATTTGGTCTGACTCTCTTCTACTTCGAGGCTTTCACCGGGTTTTCTGGTCAAGCCATATACAACGACTCCTACTTGTTGCTGTTTAACGTTATTCTCACATCTCTCCCTGTCATCGCCCTTGGAGTTTTTGAGCAAGACGTGTCTTCAGAAGTCTGCTTACAGTTCCCAGCACTGTACCAGCAAGGCCCCAAGAACCTGTTCTTTGACTGGTACAGAATCATCGGGTGGATGGCAAATGGAGTCTATGCATCCGTAGTCATATTTTCCCTCAACATTGGCATCTTTCATGTCCAATCTTTCTGTTCTGGTGGCCAAACAGCAGACATGGACGCAATGGGAACTGCAATGTTCACGTGCATCATCTGGGCAGTGAACGTACAGATAGCTTTAACCATGAGCCATTTCACATGGATCCAACACGTCTTGATCTGGGGAAGTATCGTCACCTGGTACATCTTCCTTGCCCTATTTGGCATGTTACCTCCAAAAGTCTCAGGAAACATCTTCCACATGCTCTCGGAAACCCTAGCACCTGCACCAATCTTCTGGCTTACCTCACTGCTGGTCATAGCCGCCACAACACTCCCCTACTTGGCTTACATTTCGTTCCAGAGATCGTTAAACCCTCTGGACCATCACATCATCCAAGAGATCAAGCATTTCAGAATCGACGTCCAGGACGAATGTATGTGGACGAGGGAAAGATCAAAGGCTAGAGAGAAGACCAAGATTGGAGTGACAGCTCGTGTTGATGCCAAGATCCGCCAGCTGAGAGGAAGGCTCCAGAGAAAACACTCCATATTGAGCGTTATGAGCGGTCTGAGTGGCGTCTCAGCATCAACTGATACAACTTCCACCACACAACATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005488 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006950 GO:0006996 GO:0008150 GO:0008270 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010286 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019216 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0034204 GO:0040007 GO:0042623 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045332 GO:0046872 GO:0046914 GO:0048193 GO:0048194 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0060560 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0080090 GO:0097035 GO:0098791 GO:1905038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1243

Amino Acids

140.3

Weight (kDa)

7.0

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	43 - 110	7.8e-24	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	545 - 738	2.3e-19	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	912 - 1162	2.3e-87	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17500 AT1G17500 AT1G54280 AT1G54280 AT1G54280 AT1G72700 AT1G72700 AT1G72700 AT3G13900 AT3G13900 AT3G13900
fragaria_vesca	FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000
malus_domestica	MD09G1190200.v1.1 MD17G1173300.v1.1
prunus_persica	Prupe.3G046100_v2.0.a1 Prupe.3G046100_v2.0.a1
pyrus_communis	pycom09g10670 pycom17g17330
rosa_chinensis	RchiOBHm_Chr2g0143971
rosa_laevigata	RLG00000020069
rosa_multiflora	Rmu_ssc0000393.1_g000036
rosa_roxburghii	Rroxscaffold_2G00101430
rosa_rugosa	Rorug02G0385400 Rorug02G0385500
rosa_samantha	Rh2AG438000 Rh2BG446400
rosa_wichuraiana	Rw2G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3400
AasI	GACNNNNNNGTC	1 cut(s)	848
AatII	GACGTC	1 cut(s)	3534
Acc36I	ACCTGC	1 cut(s)	3400
AccB1I	GGYRCC	1 cut(s)	2218
AccBSI	CCGCTC	2 cut(s)	1033, 3675
AccI	GTMKAC	1 cut(s)	1642
AccIII	TCCGGA	2 cut(s)	30, 674
AciI	CCGC	9 cut(s)	388, 755, 1033, 1328, 1649, 1743, 3432, 3622, 3675
AclI	AACGTT	1 cut(s)	2946
AcoI	YGGCCR	2 cut(s)	835, 3169
AcsI	RAATTY	4 cut(s)	415, 859, 1231, 2090
AcuI	CTGAAG	3 cut(s)	2094, 2547, 2988
AcvI	CACGTG	1 cut(s)	3213
AcyI	GRCGYC	3 cut(s)	7, 3531, 3687
AfeI	AGCGCT	1 cut(s)	2601
AfiI	CCNNNNNNNGG	4 cut(s)	198, 1675, 2766, 3451
AflII	CTTAAG	1 cut(s)	2255
AflIII	ACRYGT	4 cut(s)	481, 801, 2997, 3277
AjiI	CACGTC	3 cut(s)	804, 2998, 3280
AjnI	CCWGG	4 cut(s)	109, 2544, 3305, 3534
AjuI	GAANNNNNNNTTGG	8 cut(s)	251, 283, 608, 640, 2754, 2786, 3041, 3073
Alw21I	GWGCWC	1 cut(s)	1143
Ama87I	CYCGRG	1 cut(s)	1670
Aor13HI	TCCGGA	2 cut(s)	30, 674
Aor51HI	AGCGCT	1 cut(s)	2601
AoxI	GGCC	4 cut(s)	835, 1813, 3043, 3169
ApeKI	GCWGC	6 cut(s)	278, 1370, 1373, 2393, 2396, 2468
ApoI	RAATTY	4 cut(s)	415, 859, 1231, 2090
ArsI	GACNNNNNNTTYG	6 cut(s)	173, 205, 2056, 2088, 2097, 2129
AseI	ATTAAT	1 cut(s)	102
Asp700I	GAANNNNTTC	2 cut(s)	2172, 3056
AspLEI	GCGC	1 cut(s)	2602
AspS9I	GGNCC	4 cut(s)	89, 107, 3044, 3490
AsuC2I	CCSGG	1 cut(s)	2896
AsuHPI	GGTGA	8 cut(s)	424, 461, 608, 1424, 2027, 2666, 2884, 3295
AvaI	CYCGRG	1 cut(s)	1670
AvaII	GGWCC	3 cut(s)	89, 107, 3490
AxyI	CCTNAGG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	2802
BalI	TGGCCA	2 cut(s)	837, 3171
BamHI	GGATCC	3 cut(s)	27, 2458, 3270
BanI	GGYRCC	1 cut(s)	2218
BanII	GRGCYC	1 cut(s)	1143
BarI	GAAGNNNNNNTAC	6 cut(s)	2010, 2042, 2330, 2362, 3000, 3032
BauI	CACGAG	2 cut(s)	118, 3603
BbrPI	CACGTG	1 cut(s)	3213
BbsI	GAAGAC	3 cut(s)	2205, 2994, 3587
Bbv12I	GWGCWC	1 cut(s)	1143
BbvI	GCAGC	6 cut(s)	265, 1357, 1360, 2383, 2405, 2480
BcgI	CGANNNNNNTGC	2 cut(s)	1209, 1243
BciT130I	CCWGG	4 cut(s)	111, 2546, 3307, 3536
BciVI	GTATCC	2 cut(s)	107, 2003
BclI	TGATCA	3 cut(s)	1080, 2442, 2481
BcnI	CCSGG	1 cut(s)	2896
BfmI	CTRYAG	3 cut(s)	2190, 2207, 2314
BfoI	RGCGCY	1 cut(s)	2603
BfrI	CTTAAG	1 cut(s)	2255
BfuAI	ACCTGC	1 cut(s)	3400
BfuI	GTATCC	2 cut(s)	107, 2003
BglII	AGATCT	1 cut(s)	1393
BisI	GCNGC	8 cut(s)	279, 1371, 1374, 1743, 2394, 2397, 2469, 3432
BlsI	GCNGC	8 cut(s)	280, 1372, 1375, 1744, 2395, 2398, 2470, 3433
Bme1390I	CCNGG	5 cut(s)	111, 2546, 2896, 3307, 3536
Bme18I	GGWCC	3 cut(s)	89, 107, 3490
BmeT110I	CYCGRG	1 cut(s)	1670
BmgBI	CACGTC	3 cut(s)	804, 2998, 3280
BmgT120I	GGNCC	4 cut(s)	89, 107, 3044, 3490
BmiI	GGNNCC	6 cut(s)	29, 2220, 2460, 3046, 3272, 3641
BmrFI	CCNGG	5 cut(s)	111, 2546, 2896, 3307, 3536
BmrI	ACTGGG	1 cut(s)	1534
BmsI	GCATC	8 cut(s)	1440, 2406, 2715, 3116, 3147, 3225, 3601, 3704
BmuI	ACTGGG	1 cut(s)	1534
BpiI	GAAGAC	3 cut(s)	2205, 2994, 3587
BplI	GAGNNNNNCTC	4 cut(s)	1192, 1224, 3624, 3656
BpmI	CTGGAG	2 cut(s)	1194, 3626
Bpu10I	CCTNAGC	2 cut(s)	794, 1029
BpuEI	CTTGAG	2 cut(s)	799, 1200
BpuMI	CCSGG	1 cut(s)	2896
BsaAI	YACGTR	3 cut(s)	482, 1223, 3213
BsaBI	GATNNNNATC	3 cut(s)	699, 1115, 2420
BsaHI	GRCGYC	3 cut(s)	7, 3531, 3687
BsaI	GGTCTC	1 cut(s)	2057
BsaJI	CCNNGG	6 cut(s)	1433, 1671, 2544, 2643, 2794, 2977
BsaWI	WCCGGW	3 cut(s)	30, 674, 1018
BsaXI	ACNNNNNCTCC	2 cut(s)	2909, 2939
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 1675, 2766, 3451
Bse21I	CCTNAGG	1 cut(s)	167
Bse3DI	GCAATG	3 cut(s)	1323, 3198, 3210
Bse8I	GATNNNNATC	3 cut(s)	699, 1115, 2420
BseAI	TCCGGA	2 cut(s)	30, 674
BseBI	CCWGG	4 cut(s)	111, 2546, 3307, 3536
BseDI	CCNNGG	6 cut(s)	1433, 1671, 2544, 2643, 2794, 2977
BseJI	GATNNNNATC	3 cut(s)	699, 1115, 2420
BseLI	CCNNNNNNNGG	4 cut(s)	198, 1675, 2766, 3451
BseMI	GCAATG	3 cut(s)	1323, 3198, 3210
BseMII	CTCAG	9 cut(s)	76, 808, 1020, 2056, 2315, 3366, 3620, 3671, 3705
BseRI	GAGGAG	1 cut(s)	1418
BseSI	GKGCMC	1 cut(s)	2802
BseXI	GCAGC	6 cut(s)	265, 1357, 1360, 2383, 2405, 2480
BseYI	CCCAGC	4 cut(s)	1246, 1472, 1745, 3025
BsgI	GTGCAG	1 cut(s)	3378
Bsh1285I	CGRYCG	1 cut(s)	1019
BshFI	GGCC	4 cut(s)	837, 1815, 3045, 3171
BshNI	GGYRCC	1 cut(s)	2218
BsiEI	CGRYCG	1 cut(s)	1019
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiHKCI	CYCGRG	1 cut(s)	1670
BsiSI	CCGG	4 cut(s)	31, 675, 1019, 2895
BslFI	GGGAC	2 cut(s)	1219, 1263
BslI	CCNNNNNNNGG	4 cut(s)	198, 1675, 2766, 3451
BsmBI	CGTCTC	3 cut(s)	572, 1586, 3694
BsmFI	GGGAC	2 cut(s)	1219, 1263
BsnI	GGCC	4 cut(s)	837, 1815, 3045, 3171
Bso31I	GGTCTC	1 cut(s)	2057
BsoBI	CYCGRG	1 cut(s)	1670
Bsp1286I	GDGCHC	2 cut(s)	1143, 2802
Bsp13I	TCCGGA	2 cut(s)	30, 674
Bsp19I	CCATGG	1 cut(s)	2794
BspACI	CCGC	9 cut(s)	388, 755, 1033, 1328, 1649, 1743, 3432, 3622, 3675
BspANI	GGCC	4 cut(s)	837, 1815, 3045, 3171
BspCNI	CTCAG	9 cut(s)	75, 807, 1021, 2055, 2316, 3365, 3621, 3672, 3704
BspEI	TCCGGA	2 cut(s)	30, 674
BspLI	GGNNCC	6 cut(s)	29, 2220, 2460, 3046, 3272, 3641
BspMAI	CTGCAG	3 cut(s)	2194, 2211, 2318
BspMI	ACCTGC	1 cut(s)	3400
BspQI	GCTCTTC	1 cut(s)	1236
BspT107I	GGYRCC	1 cut(s)	2218
BspTI	CTTAAG	1 cut(s)	2255
BspTNI	GGTCTC	1 cut(s)	2057
BsrBI	CCGCTC	2 cut(s)	1033, 3675
BsrDI	GCAATG	3 cut(s)	1323, 3198, 3210
BssECI	CCNNGG	6 cut(s)	1433, 1671, 2544, 2643, 2794, 2977
BssNAI	GTATAC	1 cut(s)	1643
BssNI	GRCGYC	3 cut(s)	7, 3531, 3687
BssSI	CACGAG	2 cut(s)	118, 3603
BssT1I	CCWWGG	4 cut(s)	1433, 2643, 2794, 2977
Bst1107I	GTATAC	1 cut(s)	1643
Bst2BI	CACGAG	2 cut(s)	118, 3603
Bst2UI	CCWGG	4 cut(s)	111, 2546, 3307, 3536
Bst6I	CTCTTC	4 cut(s)	893, 1236, 2361, 2879
BstACI	GRCGYC	3 cut(s)	7, 3531, 3687
BstAFI	CTTAAG	1 cut(s)	2255
BstAPI	GCANNNNNTGC	1 cut(s)	2474
BstBAI	YACGTR	3 cut(s)	482, 1223, 3213
BstC8I	GCNNGC	6 cut(s)	1158, 2314, 2726, 2730, 2743, 3626
BstDSI	CCRYGG	1 cut(s)	2794
BstH2I	RGCGCY	1 cut(s)	2603
BstHHI	GCGC	1 cut(s)	2602
BstMCI	CGRYCG	1 cut(s)	1019
BstMWI	GCNNNNNNNGC	6 cut(s)	2474, 2599, 2712, 2721, 2738, 3672
BstNI	CCWGG	4 cut(s)	111, 2546, 3307, 3536
BstNSI	RCATGY	4 cut(s)	2468, 2728, 3337, 3373
BstSCI	CCNGG	5 cut(s)	109, 2544, 2894, 3305, 3534
BstSFI	CTRYAG	3 cut(s)	2190, 2207, 2314
BstSLI	GKGCMC	1 cut(s)	2802
BstV1I	GCAGC	6 cut(s)	265, 1357, 1360, 2383, 2405, 2480
BstV2I	GAAGAC	3 cut(s)	2205, 2994, 3587
BstX2I	RGATCY	7 cut(s)	27, 564, 694, 1393, 2458, 3270, 3618
BstXI	CCANNNNNNTGG	3 cut(s)	1360, 1547, 3405
BstYI	RGATCY	7 cut(s)	27, 564, 694, 1393, 2458, 3270, 3618
BstZ17I	GTATAC	1 cut(s)	1643
Bsu36I	CCTNAGG	1 cut(s)	167
BsuI	GTATCC	2 cut(s)	107, 2003
BsuRI	GGCC	4 cut(s)	837, 1815, 3045, 3171
BtgI	CCRYGG	1 cut(s)	2794
BtgZI	GCGATG	1 cut(s)	2956
BtrI	CACGTC	3 cut(s)	804, 2998, 3280
BtsI	GCAGTG	7 cut(s)	981, 1083, 1512, 1659, 2199, 3234, 3416
BveI	ACCTGC	1 cut(s)	3400
Cac8I	GCNNGC	6 cut(s)	1158, 2314, 2726, 2730, 2743, 3626
CfoI	GCGC	1 cut(s)	2602
Cfr13I	GGNCC	4 cut(s)	89, 107, 3044, 3490
CseI	GACGC	2 cut(s)	3197, 3676
CsiI	ACCWGGT	1 cut(s)	3305
DraI	TTTAAA	3 cut(s)	55, 1236, 1845
DrdI	GACNNNNNNGTC	1 cut(s)	848
DseDI	GACNNNNNNGTC	1 cut(s)	848
EaeI	YGGCCR	2 cut(s)	835, 3169
Eam1104I	CTCTTC	4 cut(s)	893, 1236, 2361, 2879
EarI	CTCTTC	4 cut(s)	893, 1236, 2361, 2879
EciI	GGCGGA	2 cut(s)	403, 3611
Ecl136II	GAGCTC	1 cut(s)	1141
Eco130I	CCWWGG	4 cut(s)	1433, 2643, 2794, 2977
Eco24I	GRGCYC	1 cut(s)	1143
Eco31I	GGTCTC	1 cut(s)	2057
Eco47I	GGWCC	3 cut(s)	89, 107, 3490
Eco47III	AGCGCT	1 cut(s)	2601
Eco53kI	GAGCTC	1 cut(s)	1141
Eco57I	CTGAAG	3 cut(s)	2094, 2547, 2988
Eco72I	CACGTG	1 cut(s)	3213
Eco81I	CCTNAGG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	1670
EcoICRI	GAGCTC	1 cut(s)	1141
EcoO109I	RGGNCCY	2 cut(s)	89, 3044
EcoRI	GAATTC	2 cut(s)	415, 859
EcoRII	CCWGG	4 cut(s)	109, 2544, 3305, 3534
EcoT14I	CCWWGG	4 cut(s)	1433, 2643, 2794, 2977
EcoT22I	ATGCAT	4 cut(s)	993, 1455, 2231, 3109
EcoT38I	GRGCYC	1 cut(s)	1143
ErhI	CCWWGG	4 cut(s)	1433, 2643, 2794, 2977
Esp3I	CGTCTC	3 cut(s)	572, 1586, 3694
FalI	AAGNNNNNCTT	6 cut(s)	1039, 1071, 2238, 2270, 2627, 2659
FaqI	GGGAC	2 cut(s)	1219, 1263
FauI	CCCGC	1 cut(s)	1321
FauNDI	CATATG	2 cut(s)	993, 2506
FbaI	TGATCA	3 cut(s)	1080, 2442, 2481
FblI	GTMKAC	1 cut(s)	1642
Fnu4HI	GCNGC	8 cut(s)	279, 1371, 1374, 1743, 2394, 2397, 2469, 3432
FriOI	GRGCYC	1 cut(s)	1143
Fsp4HI	GCNGC	8 cut(s)	279, 1371, 1374, 1743, 2394, 2397, 2469, 3432
GlaI	GCGC	1 cut(s)	2601
GluI	GCNGC	8 cut(s)	279, 1371, 1374, 1743, 2394, 2397, 2469, 3432
GsaI	CCCAGC	4 cut(s)	1250, 1476, 1749, 3029
GsuI	CTGGAG	2 cut(s)	1194, 3626
HaeII	RGCGCY	1 cut(s)	2603
HaeIII	GGCC	4 cut(s)	837, 1815, 3045, 3171
HapII	CCGG	4 cut(s)	31, 675, 1019, 2895
HgaI	GACGC	2 cut(s)	3197, 3676
HhaI	GCGC	1 cut(s)	2602
Hin1I	GRCGYC	3 cut(s)	7, 3531, 3687
Hin6I	GCGC	1 cut(s)	2600
HinP1I	GCGC	1 cut(s)	2600
HincII	GTYRAC	3 cut(s)	1038, 1258, 2554
HindII	GTYRAC	3 cut(s)	1038, 1258, 2554
HpaI	GTTAAC	1 cut(s)	1038
HpaII	CCGG	4 cut(s)	31, 675, 1019, 2895
HphI	GGTGA	8 cut(s)	424, 461, 608, 1424, 2027, 2666, 2884, 3295
Hpy99I	CGWCG	3 cut(s)	12, 1403, 3533
HpyF10VI	GCNNNNNNNGC	6 cut(s)	2474, 2599, 2712, 2721, 2738, 3672
Hsp92I	GRCGYC	3 cut(s)	7, 3531, 3687
HspAI	GCGC	1 cut(s)	2600
Kpn2I	TCCGGA	2 cut(s)	30, 674
Ksp22I	TGATCA	3 cut(s)	1080, 2442, 2481
KspAI	GTTAAC	1 cut(s)	1038
LguI	GCTCTTC	1 cut(s)	1236
LmnI	GCTCC	5 cut(s)	337, 1325, 1405, 2117, 3645
Lsp1109I	GCAGC	6 cut(s)	265, 1357, 1360, 2383, 2405, 2480
LweI	GCATC	8 cut(s)	1440, 2406, 2715, 3116, 3147, 3225, 3601, 3704
MabI	ACCWGGT	1 cut(s)	3305
MbiI	CCGCTC	2 cut(s)	1033, 3675
MfeI	CAATTG	1 cut(s)	2649
MflI	RGATCY	7 cut(s)	27, 564, 694, 1393, 2458, 3270, 3618
MhlI	GDGCHC	2 cut(s)	1143, 2802
MlsI	TGGCCA	2 cut(s)	837, 3171
MluNI	TGGCCA	2 cut(s)	837, 3171
MlyI	GAGTC	6 cut(s)	779, 1201, 1721, 2863, 2918, 3108
MmeI	TCCRAC	6 cut(s)	357, 703, 1479, 2095, 2653, 3298
Mox20I	TGGCCA	2 cut(s)	837, 3171
Mph1103I	ATGCAT	4 cut(s)	993, 1455, 2231, 3109
MroI	TCCGGA	2 cut(s)	30, 674
MroXI	GAANNNNTTC	2 cut(s)	2172, 3056
MscI	TGGCCA	2 cut(s)	837, 3171
MslI	CAYNNNNRTG	4 cut(s)	1458, 1628, 2004, 2414
Msp20I	TGGCCA	2 cut(s)	837, 3171
MspA1I	CMGCKG	3 cut(s)	1745, 2396, 3628
MspCI	CTTAAG	1 cut(s)	2255
MspI	CCGG	4 cut(s)	31, 675, 1019, 2895
MspR9I	CCNGG	5 cut(s)	111, 2546, 2896, 3307, 3536
MunI	CAATTG	1 cut(s)	2649
MvaI	CCWGG	4 cut(s)	111, 2546, 3307, 3536
MwoI	GCNNNNNNNGC	6 cut(s)	2474, 2599, 2712, 2721, 2738, 3672
NciI	CCSGG	1 cut(s)	2896
NcoI	CCATGG	1 cut(s)	2794
NdeI	CATATG	2 cut(s)	993, 2506
NlaIV	GGNNCC	6 cut(s)	29, 2220, 2460, 3046, 3272, 3641
NmuCI	GTSAC	4 cut(s)	1420, 1655, 3301, 3595
NsiI	ATGCAT	4 cut(s)	993, 1455, 2231, 3109
NspI	RCATGY	4 cut(s)	2468, 2728, 3337, 3373
PaeI	GCATGC	1 cut(s)	2728
PaqCI	CACCTGC	1 cut(s)	3400
PciSI	GCTCTTC	1 cut(s)	1236
PcsI	WCGNNNNNNNCGW	2 cut(s)	1068, 3537
PdmI	GAANNNNTTC	2 cut(s)	2172, 3056
PfeI	GAWTC	8 cut(s)	772, 891, 1111, 1912, 2173, 2680, 3075, 3525
PflFI	GACNNNGTC	1 cut(s)	1540
PfoI	TCCNGGA	1 cut(s)	3534
PkrI	GCNGC	8 cut(s)	280, 1372, 1375, 1744, 2395, 2398, 2470, 3433
PleI	GAGTC	6 cut(s)	779, 1201, 1720, 2863, 2918, 3107
PmaCI	CACGTG	1 cut(s)	3213
PmlI	CACGTG	1 cut(s)	3213
PpsI	GAGTC	6 cut(s)	779, 1201, 1720, 2863, 2918, 3107
Ppu21I	YACGTR	3 cut(s)	482, 1223, 3213
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	1143
Psp1406I	AACGTT	1 cut(s)	2946
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	4 cut(s)	109, 2544, 3305, 3534
PspCI	CACGTG	1 cut(s)	3213
PspFI	CCCAGC	4 cut(s)	1246, 1472, 1745, 3025
PspGI	CCWGG	4 cut(s)	109, 2544, 3305, 3534
PspN4I	GGNNCC	6 cut(s)	29, 2220, 2460, 3046, 3272, 3641
PspPI	GGNCC	4 cut(s)	89, 107, 3044, 3490
PspPPI	RGGWCCY	1 cut(s)	89
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PstI	CTGCAG	3 cut(s)	2194, 2211, 2318
PsuI	RGATCY	7 cut(s)	27, 564, 694, 1393, 2458, 3270, 3618
PsyI	GACNNNGTC	1 cut(s)	1540
PvuII	CAGCTG	2 cut(s)	2396, 3628
RseI	CAYNNNNRTG	4 cut(s)	1458, 1628, 2004, 2414
SacI	GAGCTC	1 cut(s)	1143
SapI	GCTCTTC	1 cut(s)	1236
SatI	GCNGC	8 cut(s)	279, 1371, 1374, 1743, 2394, 2397, 2469, 3432
Sau96I	GGNCC	4 cut(s)	89, 107, 3044, 3490
SchI	GAGTC	6 cut(s)	779, 1201, 1721, 2863, 2918, 3108
ScrFI	CCNGG	5 cut(s)	111, 2546, 2896, 3307, 3536
SduI	GDGCHC	2 cut(s)	1143, 2802
SexAI	ACCWGGT	1 cut(s)	3305
SfaNI	GCATC	8 cut(s)	1440, 2406, 2715, 3116, 3147, 3225, 3601, 3704
SfcI	CTRYAG	3 cut(s)	2190, 2207, 2314
SinI	GGWCC	3 cut(s)	89, 107, 3490
SmiI	ATTTAAAT	1 cut(s)	1236
SmiMI	CAYNNNNRTG	4 cut(s)	1458, 1628, 2004, 2414
SmlI	CTYRAG	3 cut(s)	778, 1215, 2255
SmoI	CTYRAG	3 cut(s)	778, 1215, 2255
SphI	GCATGC	1 cut(s)	2728
SsiI	CCGC	9 cut(s)	388, 755, 1033, 1328, 1649, 1743, 3432, 3622, 3675
SspI	AATATT	1 cut(s)	1947
SstI	GAGCTC	1 cut(s)	1143
StyD4I	CCNGG	5 cut(s)	109, 2544, 2894, 3305, 3534
StyI	CCWWGG	4 cut(s)	1433, 2643, 2794, 2977
SwaI	ATTTAAAT	1 cut(s)	1236
TaqII	GACCGA	1 cut(s)	2081
TatI	WGTACW	1 cut(s)	1697
TauI	GCSGC	2 cut(s)	1745, 3434
TfiI	GAWTC	8 cut(s)	772, 891, 1111, 1912, 2173, 2680, 3075, 3525
TseFI	GTSAC	4 cut(s)	1420, 1655, 3301, 3595
TseI	GCWGC	6 cut(s)	278, 1370, 1373, 2393, 2396, 2468
Tsp45I	GTSAC	4 cut(s)	1420, 1655, 3301, 3595
TspGWI	ACGGA	2 cut(s)	1883, 3100
Tth111I	GACNNNGTC	1 cut(s)	1540
Vha464I	CTTAAG	1 cut(s)	2255
VpaK11BI	GGWCC	3 cut(s)	89, 107, 3490
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	4 cut(s)	415, 859, 1231, 2090
XbaI	TCTAGA	1 cut(s)	2773
XceI	RCATGY	4 cut(s)	2468, 2728, 3337, 3373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	1642
XmnI	GAANNNNTTC	2 cut(s)	2172, 3056
ZraI	GACGTC	1 cut(s)	3532
Zsp2I	ATGCAT	4 cut(s)	993, 1455, 2231, 3109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.