Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003542

Physical Location & Seq

Genomic Coordinates Forward (+)

49194173 .. 49196692

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0385500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTCTATTTTTTCTTGCTGAAAATGGTGCTAGCTTAGGTATCTCATCTGGTATTGTGGAAGCTGTATATATCACCGGCTTCCCCAAAGAATCCGACCTCAAATTGACCACTGCCACTACCAAACTCAAGCTTCGAGAAGGTTTGACTGGCCTCCTCGTCAAGAACCTCTACTTGTCCTGCGATCCTTACATGCGAAGCCATATGACCAAGCAGAAGGGAGGGGGTGAGGAGGGGGTTTCCAGCTGCCCATCAGACCATTTGTGTGAGAACCAACACGACAGGCCCACTTATGTCCAATCCTTCACACCCGGCTCGCCTGTAATTGGTTTGGGAGTGGCTAAAGTCCTGGAATCTGGGGATCCAAAGTTTAAGCCAGGGGACTTGGTTTGGGGTCACACTGGTTGGGAAGAATATAGTGTCATCACCACAGAGTTTCTGATTAAGATTCACCACACTGATGTGCCTCTCTCTTACTATACTGGACTTCTCGGTATGCCTGGAGTGACTGCTTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTACATTTCAGCCGCATCTGGAGCGGTAGGTCAGCTTGTTGGCCAATTTGCAAAGTTAACAGGTTGTTATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGATACAATTAGCATTATCAGACCCATTTAGATTGTTATGGGATTATAACAACTATCTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

240

Amino Acids

25.95

Weight (kDa)

6.07

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	25 - 74	8.8e-08	N-terminal domain of oxidoreductase
ADH_N_2	PF16884	93 - 150	8.4e-13	N-terminal domain of oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17500 AT1G17500 AT1G54280 AT1G54280 AT1G54280 AT1G72700 AT1G72700 AT1G72700 AT3G13900 AT3G13900 AT3G13900
fragaria_vesca	FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000
malus_domestica	MD09G1190200.v1.1 MD17G1173300.v1.1
prunus_persica	Prupe.3G046100_v2.0.a1 Prupe.3G046100_v2.0.a1
pyrus_communis	pycom09g10670 pycom17g17330
rosa_chinensis	RchiOBHm_Chr2g0143971
rosa_laevigata	RLG00000020069
rosa_multiflora	Rmu_ssc0000393.1_g000036
rosa_roxburghii	Rroxscaffold_2G00101430
rosa_rugosa	Rorug02G0385400 Rorug02G0385500
rosa_samantha	Rh2AG438000 Rh2BG446400
rosa_wichuraiana	Rw2G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AccBSI	CCGCTC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	2 cut(s)	573, 584
AclWI	GGATC	3 cut(s)	179, 356, 369
AcoI	YGGCCR	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	326, 548
AjnI	CCWGG	3 cut(s)	348, 376, 499
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	5 cut(s)	36, 65, 133, 246, 595
AluI	AGCT	5 cut(s)	36, 65, 133, 246, 595
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	3 cut(s)	179, 356, 369
AoxI	GGCC	3 cut(s)	151, 284, 601
ApeKI	GCWGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	4 cut(s)	67, 239, 418, 443
AsuNHI	GCTAGC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	603
BamHI	GGATCC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	3 cut(s)	350, 378, 501
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	2 cut(s)	247, 573
BlsI	GCNGC	2 cut(s)	248, 574
Bme1390I	CCNGG	4 cut(s)	312, 350, 378, 501
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	4 cut(s)	312, 350, 378, 501
BmsI	GCATC	1 cut(s)	584
BmtI	GCTAGC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpmI	CTGGAG	2 cut(s)	522, 600
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 548
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	154, 406, 487
BseBI	CCWGG	3 cut(s)	350, 378, 501
BseDI	CCNNGG	1 cut(s)	377
BseLI	CCNNNNNNNGG	2 cut(s)	326, 548
BseNI	ACTGG	3 cut(s)	154, 406, 487
BseRI	GAGGAG	2 cut(s)	146, 245
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	3 cut(s)	153, 286, 603
BsiSI	CCGG	2 cut(s)	78, 312
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	326, 548
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	153, 286, 603
Bsp143I	GATC	3 cut(s)	184, 361, 531
BspACI	CCGC	2 cut(s)	573, 584
BspANI	GGCC	3 cut(s)	153, 286, 603
BspLI	GGNNCC	1 cut(s)	363
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	179, 356, 369
BsrBI	CCGCTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	154, 406, 487
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	3 cut(s)	184, 361, 531
Bst2UI	CCWGG	3 cut(s)	350, 378, 501
Bst4CI	ACNGT	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	34, 317
BstDEI	CTNAG	2 cut(s)	37, 543
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstKTI	GATC	3 cut(s)	187, 364, 534
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	3 cut(s)	184, 361, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	3 cut(s)	350, 378, 501
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	4 cut(s)	310, 348, 376, 499
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	361, 531
BstYI	RGATCY	2 cut(s)	361, 531
BsuRI	GGCC	3 cut(s)	153, 286, 603
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	111, 399, 456
Cac8I	GCNNGC	2 cut(s)	34, 317
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	285
CviAII	CATG	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	37, 543
DpnI	GATC	3 cut(s)	186, 363, 533
DpnII	GATC	3 cut(s)	184, 361, 531
EaeI	YGGCCR	1 cut(s)	601
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoRII	CCWGG	3 cut(s)	348, 376, 499
FaeI	CATG	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	1 cut(s)	192
FauNDI	CATATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	247, 573
Fsp4HI	GCNGC	2 cut(s)	247, 573
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	247, 573
GsuI	CTGGAG	2 cut(s)	522, 600
HaeIII	GGCC	3 cut(s)	153, 286, 603
HapII	CCGG	2 cut(s)	78, 312
Hin1II	CATG	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	92, 353, 448
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	2 cut(s)	78, 312
HphI	GGTGA	4 cut(s)	67, 239, 418, 443
Hpy166II	GTNNAC	2 cut(s)	562, 618
Hpy188I	TCNGA	4 cut(s)	97, 256, 441, 679
Hpy188III	TCNNGA	3 cut(s)	137, 163, 579
Hpy8I	GTNNAC	2 cut(s)	562, 618
HpyAV	CCTTC	3 cut(s)	134, 211, 313
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	2 cut(s)	37, 543
Hsp92II	CATG	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	3 cut(s)	184, 361, 531
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	395, 505
MalI	GATC	3 cut(s)	186, 363, 533
MbiI	CCGCTC	1 cut(s)	584
MboI	GATC	3 cut(s)	184, 361, 531
MboII	GAAGA	1 cut(s)	422
MflI	RGATCY	2 cut(s)	361, 531
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	4 cut(s)	104, 324, 605, 665
MluNI	TGGCCA	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	8 cut(s)	110, 164, 167, 179, 215, 223, 226, 477
Mox20I	TGGCCA	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	3 cut(s)	372, 444, 617
MslI	CAYNNNNRTG	3 cut(s)	264, 459, 461
Msp20I	TGGCCA	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	2 cut(s)	78, 312
MspR9I	CCNGG	4 cut(s)	312, 350, 378, 501
MvaI	CCWGG	3 cut(s)	350, 378, 501
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	3 cut(s)	184, 361, 531
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	2 cut(s)	395, 505
NspI	RCATGY	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	92, 353, 448
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	248, 574
PsiI	TTATAA	1 cut(s)	705
Psp6I	CCWGG	3 cut(s)	348, 376, 499
PspGI	CCWGG	3 cut(s)	348, 376, 499
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	361, 531
PvuII	CAGCTG	1 cut(s)	246
RseI	CAYNNNNRTG	3 cut(s)	264, 459, 461
SaqAI	TTAA	3 cut(s)	372, 444, 617
SatI	GCNGC	2 cut(s)	247, 573
Sau3AI	GATC	3 cut(s)	184, 361, 531
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	4 cut(s)	312, 350, 378, 501
SfaNI	GCATC	1 cut(s)	584
SmiMI	CAYNNNNRTG	3 cut(s)	264, 459, 461
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	104, 324, 605, 665
SsiI	CCGC	2 cut(s)	573, 584
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	4 cut(s)	310, 348, 376, 499
TaaI	ACNGT	1 cut(s)	559
TaqI	TCGA	1 cut(s)	136
TasI	AATT	4 cut(s)	104, 324, 605, 665
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	3 cut(s)	92, 353, 448
Tru1I	TTAA	3 cut(s)	372, 444, 617
Tru9I	TTAA	3 cut(s)	372, 444, 617
TscAI	CASTG	3 cut(s)	118, 406, 463
TseFI	GTSAC	2 cut(s)	395, 505
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	2 cut(s)	395, 505
TspRI	CASTG	3 cut(s)	118, 406, 463
XagI	CCTNNNNNAGG	1 cut(s)	546
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.