Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003542

Physical Location & Seq

Genomic Coordinates Forward (+)

64877346 .. 64884420

Gene Structure 7075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG438000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGCTGGAGGAAGAATAAGGGCAAGGCTACGGCGGAGCCACCTCTACACATTCTTGCGTAAGCCAAGGGGCAATGAGTCAGGGGCACCTCATCCAATCCAAGGTCCTGGGTACTCGAGAACTGTACATTGTAACCAACCTCTGCTCCATCAAAAGAAACCTTACAAATACCGTTCAAATTACATATCGACCACAAAGTATAACCCGATCACCTTCTTGCCCAAGGCACTCTTTGAGCAGTTCAGACGGGTTGCCAATATCTATTTCCTTTTGGCCGCCGGTCTTTCACTCACTTCTGTTTCTCCATTCGGTCCTTGGAGCATGATAGCTCCTTTGGCTTTTGTTGTTGGTCTCAGTATGGCAAAGGAAGCTATGGAAGACTGGAATAGGTTCTTGCAGGACATGAAGGTTAATCTCCGGAAAGTAAATGTTCATAAAGGAGATGGTGTTTTCGGATATAGGCCATGGCATAAGATTGTGGTTGGAGATGTGGTGAAAGTGGAAAAGGATAAATTCTTTCCTGCTGATCTGCTTCTATTGTCGTCAAGTTATGAGGATGGCTTCTGTTATGTTGAGACTATGAACTTAGATGGCGAGACAAATTTGAAGGTCAAGAGATGCTTGGAGGTAACCTCACCTTTGGATGACGATGGAGTTTTCAAGGACTTCACAGCAACAGTTCAATGTGAAGATCCAAATCCCAATCTTTATTCCTTTGTGGGTAATCTTGATCATGACCGGCAGATTTATCCTCTTGAACCCGGTCAGATACTCCTGAGAGATTCAAAGCTCAGGAATACAAGTTATATCTATGGGGTAGTGATATTTACAGGTCATGATAGCAAAGTCATGCAGAATTCGACAAAGTCTCCCTCAAAAAGGAGTGGAATAGAAAAGAAAATGGACAAGATTATCTACATCCTTTTCTTCATCCTTTTAGTGATCTCCTTGATCAGCTCAATAGGGTTTGGTGTGAAGACAAGAAAAGATATGCCATCGGCATGGTACTTACGACCAGACGATGCAGAAGATATGTATAGCCCAAAAAAACCTGCCGCGGCTGGCGCTATCCATCTGGTCACTGCTCTCATCCTTTATGGATATCTAATACCCATCTCTCTTTATGTTTCAATTGAGGTTGTGAAGGTCTTGCAAGCAAAGTTCATTAACAATGACATACACATGTATGATGAAGAGCATGGAACTCCTGCTCAAGCCCGGACATCAAATTTGAATGAGGAGTTAGGCCAGGTAGACACGATCCTTTCTGACAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTCTGAAGTGTTGCATTGCTGGCATTGCATACGGTGTCCACTCTAGTGAAGTTGAACTTGCAGCAGCAAAACAGATGGCTACTGACCTTGATGATCAGGACGAGCATGATGAAGAACTTGCCAATGTTCCCAGGAATAAACATAGTCAACAAGTATCATGGGGGAATGAAGTAGGATCAGAAATTGAGCTGGAAACTGTTGTTACATCCAAGGATGGTAAGGATCCGAAACCTGCCATAAAAGGGTTTAGCTTTGTGGACAACCGCCTCATGGATGGAAATTGGTTGAGAGAGCCCACCTGTGATGTGATTTTATTATTTTTGCGGATTTTAGCCGTTTGCCATACTGCAATTCCTGAGCTAAATGAAGAGACTGGCCAATATACATATGAAGCAGAGTCACCCGACGAAGGAGCTTTTCTTGTTGCAGCACGTGAGTTAGGTTTTGAGTTCTGTAAAAGAAATCAGTCAAGTGTGTATGTCCGCGAAAAGTATCCTGATCCAGGACAACCAGTGGAAAGGGAGTATCAAGTCTTAAATCTATTGGAATTCACCAGCAAAAGGAAGCGTATGTCAGTAATTGTGCGTGACGAAGATGGGCAATTATTACTTTTCTGCAAAGGTGCTGACAGCATCATTTTCGATCGACTGTCAAAGAATGGAAGAATTTATGAGGAAGCTAGTACCAAGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACGTTGGCACTTGCTTATAAAAAGCTTGAGGAGTCCGAGTATTCTGCTTGGAACAACGAATTTCAGAAAGCAAAATCATCTATCGGGGCTGATAGGGAGGTGATGCTCGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAGGGGTGCCCCAATGCATAGACAATCTTGCACAAGCTGGTCTCAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATAGGATTTGCATGTAGTTTGCTCCGACAGGGCATGAAGCAGATCTGTATATCAACAGCAAATTCAGACACATTGGGACAAGATGGAAGAGAGGCTGTGAAAGACAACATTTTGAATCAAATTACAAATGCCTCTCAAATGATCAAGTTGGAAACAGATCCACATGCAGCGTTTGCACTAATTATTGATGGAAAAACTTTAACCTATGCTTTGGACGCTGATATGAAGCATCTATTCTTGGAATTAGCTGTTGATTGTGCATCTGTCATATGCTGTCGTGTCTCCCCTAAGCAGAAGGCATTGGTAACGAGGTTAGTAAGACAAGGAACTGGGAAGACTACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCTGATATTGGTGTTGGAATCAGTGGCGTCGAAGGTATGCAGGCTGTGATGGCTAGTGACTTTGCTATTGCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGGTAATATCAGCATGCTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

949

Amino Acids

106.06

Weight (kDa)

6.06

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	42 - 109	5.5e-24	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	542 - 737	3.3e-21	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	911 - 944	4.3e-15	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17500 AT1G17500 AT1G54280 AT1G54280 AT1G54280 AT1G72700 AT1G72700 AT1G72700 AT3G13900 AT3G13900 AT3G13900
fragaria_vesca	FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000
malus_domestica	MD09G1190200.v1.1 MD17G1173300.v1.1
prunus_persica	Prupe.3G046100_v2.0.a1 Prupe.3G046100_v2.0.a1
pyrus_communis	pycom09g10670 pycom17g17330
rosa_chinensis	RchiOBHm_Chr2g0143971
rosa_laevigata	RLG00000020069
rosa_multiflora	Rmu_ssc0000393.1_g000036
rosa_roxburghii	Rroxscaffold_2G00101430
rosa_rugosa	Rorug02G0385400 Rorug02G0385500
rosa_samantha	Rh2AG438000 Rh2BG446400
rosa_wichuraiana	Rw2G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2046
Acc36I	ACCTGC	3 cut(s)	1060, 1298, 1546
AccB1I	GGYRCC	2 cut(s)	85, 2215
AccI	GTMKAC	1 cut(s)	1254
AccII	CGCG	2 cut(s)	1058, 1791
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	7 cut(s)	34, 276, 1056, 1058, 1570, 1630, 1789
AclWI	GGATC	7 cut(s)	686, 1255, 1489, 1523, 1536, 1799, 2450
AcoI	YGGCCR	2 cut(s)	273, 1681
AcsI	RAATTY	8 cut(s)	512, 601, 856, 1228, 1853, 1971, 2087, 2359
AcuI	CTGAAG	1 cut(s)	1331
AcvI	CACGTG	1 cut(s)	1739
AcyI	GRCGYC	1 cut(s)	2712
AfaI	GTAC	5 cut(s)	113, 126, 1007, 1990, 2029
AfiI	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1576, 1715, 1808, 1866, 2763
AflIII	ACRYGT	1 cut(s)	1182
AjnI	CCWGG	4 cut(s)	106, 1248, 1436, 1807
AjuI	GAANNNNNNNTTGG	4 cut(s)	248, 280, 2676, 2708
AleI	CACNNNNGTG	1 cut(s)	1350
Alw26I	GTCTC	8 cut(s)	356, 569, 590, 873, 1670, 2255, 2584, 2770
AlwI	GGATC	7 cut(s)	686, 1255, 1489, 1523, 1536, 1799, 2450
Ama87I	CYCGRG	2 cut(s)	115, 2135
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	4 cut(s)	273, 461, 1246, 1681
ApeKI	GCWGC	4 cut(s)	1367, 1370, 1733, 2465
ApoI	RAATTY	8 cut(s)	512, 601, 856, 1228, 1853, 1971, 2087, 2359
ArsI	GACNNNNNNTTYG	2 cut(s)	1213, 1245
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	1067
AspS9I	GGNCC	2 cut(s)	104, 311
AsuC2I	CCSGG	2 cut(s)	762, 1219
AsuHPI	GGTGA	7 cut(s)	202, 505, 627, 1698, 1849, 2140, 2663
AvaI	CYCGRG	2 cut(s)	115, 2135
AvaII	GGWCC	2 cut(s)	104, 311
BaeGI	GKGCMC	2 cut(s)	88, 2220
BalI	TGGCCA	1 cut(s)	1683
BamHI	GGATCC	1 cut(s)	1528
BanI	GGYRCC	2 cut(s)	85, 2215
BanII	GRGCYC	1 cut(s)	1602
BbrPI	CACGTG	1 cut(s)	1739
BbsI	GAAGAC	3 cut(s)	384, 983, 2639
BbvI	GCAGC	4 cut(s)	1379, 1382, 1745, 2477
BceAI	ACGGC	2 cut(s)	47, 1625
BcgI	CGANNNNNNTGC	4 cut(s)	1927, 1961, 2054, 2088
BciT130I	CCWGG	4 cut(s)	108, 1250, 1438, 1809
BciVI	GTATCC	1 cut(s)	1809
BclI	TGATCA	5 cut(s)	730, 951, 1399, 2169, 2439
BcnI	CCSGG	2 cut(s)	762, 1219
BcoDI	GTCTC	8 cut(s)	356, 569, 590, 873, 1670, 2255, 2584, 2770
BfaI	CTAG	3 cut(s)	1350, 1986, 2739
BfmI	CTRYAG	1 cut(s)	2184
BfoI	RGCGCY	1 cut(s)	1068
BfuAI	ACCTGC	3 cut(s)	1060, 1298, 1546
BfuI	GTATCC	1 cut(s)	1809
BglII	AGATCT	2 cut(s)	2256, 2340
BisI	GCNGC	7 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2466
BlsI	GCNGC	7 cut(s)	277, 1057, 1060, 1369, 1372, 1735, 2467
Bme1390I	CCNGG	6 cut(s)	108, 762, 1219, 1250, 1438, 1809
Bme18I	GGWCC	2 cut(s)	104, 311
BmeT110I	CYCGRG	2 cut(s)	115, 2135
BmgT120I	GGNCC	2 cut(s)	104, 311
BmiI	GGNNCC	4 cut(s)	38, 87, 1530, 2217
BmrFI	CCNGG	6 cut(s)	108, 762, 1219, 1250, 1438, 1809
BmrI	ACTGGG	2 cut(s)	2637, 2752
BmsI	GCATC	6 cut(s)	608, 1012, 1947, 2121, 2536, 2567
BmuI	ACTGGG	2 cut(s)	2637, 2752
BpiI	GAAGAC	3 cut(s)	384, 983, 2639
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	3 cut(s)	791, 1662, 2586
BpuEI	CTTGAG	3 cut(s)	1197, 2075, 2237
BpuMI	CCSGG	2 cut(s)	762, 1219
BsaAI	YACGTR	1 cut(s)	1739
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	2712
BsaI	GGTCTC	2 cut(s)	356, 2255
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1576, 1715, 1808, 1866, 2763
Bse118I	RCCGGY	2 cut(s)	278, 738
Bse1I	ACTGG	6 cut(s)	386, 1282, 1684, 1817, 2632, 2758
Bse3DI	GCAATG	3 cut(s)	79, 1320, 1329
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	4 cut(s)	108, 1250, 1438, 1809
BseGI	GGATG	9 cut(s)	91, 562, 649, 918, 930, 1089, 1511, 1525, 1585
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1576, 1715, 1808, 1866, 2763
BseMI	GCAATG	3 cut(s)	79, 1320, 1329
BseMII	CTCAG	5 cut(s)	367, 767, 805, 1653, 2834
BseNI	ACTGG	6 cut(s)	386, 1282, 1684, 1817, 2632, 2758
BseRI	GAGGAG	2 cut(s)	1253, 2072
BseSI	GKGCMC	2 cut(s)	88, 2220
BseXI	GCAGC	4 cut(s)	1379, 1382, 1745, 2477
BseYI	CCCAGC	1 cut(s)	2018
Bsh1236I	CGCG	2 cut(s)	1058, 1791
Bsh1285I	CGRYCG	1 cut(s)	1951
BshFI	GGCC	4 cut(s)	275, 463, 1248, 1683
BshNI	GGYRCC	2 cut(s)	85, 2215
BsiEI	CGRYCG	1 cut(s)	1951
BsiHKCI	CYCGRG	2 cut(s)	115, 2135
BsiSI	CCGG	5 cut(s)	279, 418, 739, 762, 1219
BsiWI	CGTACG	1 cut(s)	2027
BslFI	GGGAC	1 cut(s)	2388
BslI	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1576, 1715, 1808, 1866, 2763
BsmAI	GTCTC	8 cut(s)	356, 569, 590, 873, 1670, 2255, 2584, 2770
BsmFI	GGGAC	1 cut(s)	2388
BsnI	GGCC	4 cut(s)	275, 463, 1248, 1683
Bso31I	GGTCTC	2 cut(s)	356, 2255
BsoBI	CYCGRG	2 cut(s)	115, 2135
Bsp1286I	GDGCHC	3 cut(s)	88, 1602, 2220
Bsp13I	TCCGGA	1 cut(s)	417
Bsp1407I	TGTACA	1 cut(s)	124
Bsp19I	CCATGG	2 cut(s)	464, 2791
BspACI	CCGC	7 cut(s)	34, 276, 1056, 1058, 1570, 1630, 1789
BspANI	GGCC	4 cut(s)	275, 463, 1248, 1683
BspCNI	CTCAG	5 cut(s)	366, 768, 804, 1654, 2833
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	2 cut(s)	1058, 1791
BspHI	TCATGA	2 cut(s)	733, 835
BspLI	GGNNCC	4 cut(s)	38, 87, 1530, 2217
BspMI	ACCTGC	3 cut(s)	1060, 1298, 1546
BspPI	GGATC	7 cut(s)	686, 1255, 1489, 1523, 1536, 1799, 2450
BspQI	GCTCTTC	1 cut(s)	1188
BspT107I	GGYRCC	2 cut(s)	85, 2215
BspTNI	GGTCTC	2 cut(s)	356, 2255
BsrDI	GCAATG	3 cut(s)	79, 1320, 1329
BsrFI	RCCGGY	2 cut(s)	278, 738
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	6 cut(s)	386, 1282, 1684, 1817, 2632, 2758
BssAI	RCCGGY	2 cut(s)	278, 738
BssNI	GRCGYC	1 cut(s)	2712
BssT1I	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2791
Bst2UI	CCWGG	4 cut(s)	108, 1250, 1438, 1809
Bst4CI	ACNGT	6 cut(s)	124, 173, 679, 1340, 1504, 1956
Bst6I	CTCTTC	3 cut(s)	1188, 1668, 2380
BstACI	GRCGYC	1 cut(s)	2712
BstAPI	GCANNNNNTGC	1 cut(s)	2471
BstAUI	TGTACA	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	1739
BstC8I	GCNNGC	5 cut(s)	1063, 1155, 1327, 2727, 2839
BstDEI	CTNAG	8 cut(s)	353, 586, 776, 791, 1662, 2586, 2820, 2847
BstDSI	CCRYGG	3 cut(s)	464, 1056, 2791
BstEII	GGTNACC	1 cut(s)	628
BstENI	CCTNNNNNAGG	2 cut(s)	877, 1806
BstF5I	GGATG	9 cut(s)	91, 562, 649, 918, 930, 1089, 1511, 1525, 1585
BstFNI	CGCG	2 cut(s)	1058, 1791
BstH2I	RGCGCY	1 cut(s)	1068
BstHHI	GCGC	1 cut(s)	1067
BstMAI	GTCTC	8 cut(s)	356, 569, 590, 873, 1670, 2255, 2584, 2770
BstMCI	CGRYCG	1 cut(s)	1951
BstMWI	GCNNNNNNNGC	8 cut(s)	335, 368, 1064, 1326, 1331, 2471, 2513, 2735
BstNI	CCWGG	4 cut(s)	108, 1250, 1438, 1809
BstNSI	RCATGY	4 cut(s)	1186, 2313, 2465, 2841
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	6 cut(s)	106, 760, 1217, 1248, 1436, 1807
BstSFI	CTRYAG	1 cut(s)	2184
BstSLI	GKGCMC	2 cut(s)	88, 2220
BstUI	CGCG	2 cut(s)	1058, 1791
BstV1I	GCAGC	4 cut(s)	1379, 1382, 1745, 2477
BstV2I	GAAGAC	3 cut(s)	384, 983, 2639
BstX2I	RGATCY	5 cut(s)	691, 1528, 2256, 2340, 2455
BstXI	CCANNNNNNTGG	2 cut(s)	107, 1002
BstYI	RGATCY	5 cut(s)	691, 1528, 2256, 2340, 2455
BsuI	GTATCC	1 cut(s)	1809
BsuRI	GGCC	4 cut(s)	275, 463, 1248, 1683
BtgI	CCRYGG	3 cut(s)	464, 1056, 2791
BtsCI	GGATG	9 cut(s)	91, 562, 649, 918, 930, 1089, 1511, 1525, 1585
BtsI	GCAGTG	1 cut(s)	1080
BtsIMutI	CAGTG	3 cut(s)	1080, 1824, 2713
BveI	ACCTGC	3 cut(s)	1060, 1298, 1546
Cac8I	GCNNGC	5 cut(s)	1063, 1155, 1327, 2727, 2839
CciI	TCATGA	2 cut(s)	733, 835
CfoI	GCGC	1 cut(s)	1067
Cfr10I	RCCGGY	2 cut(s)	278, 738
Cfr13I	GGNCC	2 cut(s)	104, 311
Cfr42I	CCGCGG	1 cut(s)	1059
CseI	GACGC	2 cut(s)	2522, 2701
Csp6I	GTAC	5 cut(s)	112, 125, 1006, 1989, 2028
CviQI	GTAC	5 cut(s)	112, 125, 1006, 1989, 2028
DdeI	CTNAG	8 cut(s)	353, 586, 776, 791, 1662, 2586, 2820, 2847
EaeI	YGGCCR	2 cut(s)	273, 1681
Eam1104I	CTCTTC	3 cut(s)	1188, 1668, 2380
EarI	CTCTTC	3 cut(s)	1188, 1668, 2380
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2791
Eco24I	GRGCYC	1 cut(s)	1602
Eco31I	GGTCTC	2 cut(s)	356, 2255
Eco32I	GATATC	1 cut(s)	1103
Eco47I	GGWCC	2 cut(s)	104, 311
Eco57I	CTGAAG	1 cut(s)	1331
Eco72I	CACGTG	1 cut(s)	1739
Eco88I	CYCGRG	2 cut(s)	115, 2135
Eco91I	GGTNACC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	2 cut(s)	877, 1806
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	2 cut(s)	856, 1853
EcoRII	CCWGG	4 cut(s)	106, 1248, 1436, 1807
EcoRV	GATATC	1 cut(s)	1103
EcoT14I	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2791
EcoT22I	ATGCAT	1 cut(s)	2228
EcoT38I	GRGCYC	1 cut(s)	1602
ErhI	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2791
FalI	AAGNNNNNCTT	6 cut(s)	215, 247, 605, 637, 1347, 1379
FaqI	GGGAC	1 cut(s)	2388
FauNDI	CATATG	2 cut(s)	1693, 2567
FbaI	TGATCA	5 cut(s)	730, 951, 1399, 2169, 2439
FblI	GTMKAC	1 cut(s)	1254
Fnu4HI	GCNGC	7 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2466
FokI	GGATG	9 cut(s)	78, 569, 656, 905, 917, 1076, 1498, 1532, 1592
FriOI	GRGCYC	1 cut(s)	1602
Fsp4HI	GCNGC	7 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2466
FspBI	CTAG	3 cut(s)	1350, 1986, 2739
GlaI	GCGC	1 cut(s)	1066
GluI	GCNGC	7 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2466
GsaI	CCCAGC	1 cut(s)	2022
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	1068
HaeIII	GGCC	4 cut(s)	275, 463, 1248, 1683
HapII	CCGG	5 cut(s)	279, 418, 739, 762, 1219
HgaI	GACGC	2 cut(s)	2522, 2701
HhaI	GCGC	1 cut(s)	1067
Hin1I	GRCGYC	1 cut(s)	2712
Hin6I	GCGC	1 cut(s)	1065
HinP1I	GCGC	1 cut(s)	1065
HincII	GTYRAC	2 cut(s)	1454, 2268
HindII	GTYRAC	2 cut(s)	1454, 2268
HindIII	AAGCTT	1 cut(s)	2051
HinfI	GANTC	7 cut(s)	77, 782, 1703, 2060, 2413, 2677, 2703
HpaII	CCGG	5 cut(s)	279, 418, 739, 762, 1219
HphI	GGTGA	7 cut(s)	202, 505, 627, 1698, 1849, 2140, 2663
Hpy166II	GTNNAC	5 cut(s)	1255, 1345, 1454, 1564, 2268
Hpy8I	GTNNAC	5 cut(s)	1255, 1345, 1454, 1564, 2268
Hpy99I	CGWCG	2 cut(s)	1715, 2717
HpyAV	CCTTC	7 cut(s)	223, 400, 601, 1138, 1709, 2587, 2711
HpyCH4III	ACNGT	6 cut(s)	124, 173, 679, 1340, 1504, 1956
HpyCH4IV	ACGT	2 cut(s)	1738, 2030
HpyF10VI	GCNNNNNNNGC	8 cut(s)	335, 368, 1064, 1326, 1331, 2471, 2513, 2735
HpyF3I	CTNAG	8 cut(s)	353, 586, 776, 791, 1662, 2586, 2820, 2847
HpySE526I	ACGT	2 cut(s)	1738, 2030
Hsp92I	GRCGYC	1 cut(s)	2712
HspAI	GCGC	1 cut(s)	1065
Kpn2I	TCCGGA	1 cut(s)	417
Ksp22I	TGATCA	5 cut(s)	730, 951, 1399, 2169, 2439
KspI	CCGCGG	1 cut(s)	1059
LguI	GCTCTTC	1 cut(s)	1188
LmnI	GCTCC	6 cut(s)	36, 150, 318, 334, 1718, 2325
Lsp1109I	GCAGC	4 cut(s)	1379, 1382, 1745, 2477
LweI	GCATC	6 cut(s)	608, 1012, 1947, 2121, 2536, 2567
MaeI	CTAG	3 cut(s)	1350, 1986, 2739
MaeII	ACGT	2 cut(s)	1738, 2030
MaeIII	GTNAC	8 cut(s)	131, 628, 1078, 1507, 1704, 1892, 2602, 2741
MfeI	CAATTG	2 cut(s)	1131, 2646
MflI	RGATCY	5 cut(s)	691, 1528, 2256, 2340, 2455
MhlI	GDGCHC	3 cut(s)	88, 1602, 2220
MlsI	TGGCCA	1 cut(s)	1683
MluNI	TGGCCA	1 cut(s)	1683
MlyI	GAGTC	3 cut(s)	86, 1712, 2069
MmeI	TCCRAC	5 cut(s)	463, 2347, 2427, 2650, 2680
Mox20I	TGGCCA	1 cut(s)	1683
Mph1103I	ATGCAT	1 cut(s)	2228
MroI	TCCGGA	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	1683
MseI	TTAA	5 cut(s)	411, 1167, 1286, 1841, 2498
MslI	CAYNNNNRTG	5 cut(s)	1000, 1181, 1185, 1350, 2001
Msp20I	TGGCCA	1 cut(s)	1683
MspA1I	CMGCKG	2 cut(s)	1058, 2189
MspI	CCGG	5 cut(s)	279, 418, 739, 762, 1219
MspR9I	CCNGG	6 cut(s)	108, 762, 1219, 1250, 1438, 1809
MunI	CAATTG	2 cut(s)	1131, 2646
MvaI	CCWGG	4 cut(s)	108, 1250, 1438, 1809
MvnI	CGCG	2 cut(s)	1058, 1791
MwoI	GCNNNNNNNGC	8 cut(s)	335, 368, 1064, 1326, 1331, 2471, 2513, 2735
NciI	CCSGG	2 cut(s)	762, 1219
NcoI	CCATGG	2 cut(s)	464, 2791
NdeI	CATATG	2 cut(s)	1693, 2567
NlaIV	GGNNCC	4 cut(s)	38, 87, 1530, 2217
NmuCI	GTSAC	4 cut(s)	1078, 1704, 1892, 2741
NsiI	ATGCAT	1 cut(s)	2228
NspI	RCATGY	4 cut(s)	1186, 2313, 2465, 2841
OliI	CACNNNNGTG	1 cut(s)	1350
PaeI	GCATGC	1 cut(s)	2841
PaeR7I	CTCGAG	2 cut(s)	115, 2135
PagI	TCATGA	2 cut(s)	733, 835
PciI	ACATGT	1 cut(s)	1182
PciSI	GCTCTTC	1 cut(s)	1188
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	4 cut(s)	782, 2413, 2677, 2703
Pfl23II	CGTACG	1 cut(s)	2027
PflFI	GACNNNGTC	1 cut(s)	865
PfoI	TCCNGGA	1 cut(s)	1807
PkrI	GCNGC	7 cut(s)	277, 1057, 1060, 1369, 1372, 1735, 2467
Ple19I	CGATCG	1 cut(s)	1951
PleI	GAGTC	3 cut(s)	85, 1711, 2068
PmaCI	CACGTG	1 cut(s)	1739
PmlI	CACGTG	1 cut(s)	1739
PpsI	GAGTC	3 cut(s)	85, 1711, 2068
Ppu21I	YACGTR	1 cut(s)	1739
PpuMI	RGGWCCY	1 cut(s)	104
PscI	ACATGT	1 cut(s)	1182
PsiI	TTATAA	1 cut(s)	2046
Psp5II	RGGWCCY	1 cut(s)	104
Psp6I	CCWGG	4 cut(s)	106, 1248, 1436, 1807
PspCI	CACGTG	1 cut(s)	1739
PspEI	GGTNACC	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	2018
PspGI	CCWGG	4 cut(s)	106, 1248, 1436, 1807
PspLI	CGTACG	1 cut(s)	2027
PspN4I	GGNNCC	4 cut(s)	38, 87, 1530, 2217
PspPI	GGNCC	2 cut(s)	104, 311
PspPPI	RGGWCCY	1 cut(s)	104
PspXI	VCTCGAGB	1 cut(s)	2135
PsuI	RGATCY	5 cut(s)	691, 1528, 2256, 2340, 2455
PsyI	GACNNNGTC	1 cut(s)	865
PvuI	CGATCG	1 cut(s)	1951
PvuII	CAGCTG	1 cut(s)	2189
RsaI	GTAC	5 cut(s)	113, 126, 1007, 1990, 2029
RsaNI	GTAC	5 cut(s)	112, 125, 1006, 1989, 2028
RseI	CAYNNNNRTG	5 cut(s)	1000, 1181, 1185, 1350, 2001
SacII	CCGCGG	1 cut(s)	1059
SapI	GCTCTTC	1 cut(s)	1188
SaqAI	TTAA	5 cut(s)	411, 1167, 1286, 1841, 2498
SatI	GCNGC	7 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2466
Sau96I	GGNCC	2 cut(s)	104, 311
SchI	GAGTC	3 cut(s)	86, 1712, 2069
ScrFI	CCNGG	6 cut(s)	108, 762, 1219, 1250, 1438, 1809
SduI	GDGCHC	3 cut(s)	88, 1602, 2220
SfaNI	GCATC	6 cut(s)	608, 1012, 1947, 2121, 2536, 2567
SfcI	CTRYAG	1 cut(s)	2184
Sfr274I	CTCGAG	2 cut(s)	115, 2135
Sfr303I	CCGCGG	1 cut(s)	1059
SgrBI	CCGCGG	1 cut(s)	1059
SinI	GGWCC	2 cut(s)	104, 311
SlaI	CTCGAG	2 cut(s)	115, 2135
SmiMI	CAYNNNNRTG	5 cut(s)	1000, 1181, 1185, 1350, 2001
SmlI	CTYRAG	5 cut(s)	115, 1212, 2054, 2135, 2252
SmoI	CTYRAG	5 cut(s)	115, 1212, 2054, 2135, 2252
SphI	GCATGC	1 cut(s)	2841
SsiI	CCGC	7 cut(s)	34, 276, 1056, 1058, 1570, 1630, 1789
SspMI	CTAG	3 cut(s)	1350, 1986, 2739
StyD4I	CCNGG	6 cut(s)	106, 760, 1217, 1248, 1436, 1807
StyI	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2791
TaaI	ACNGT	6 cut(s)	124, 173, 679, 1340, 1504, 1956
TaiI	ACGT	2 cut(s)	1741, 2033
TaqI	TCGA	7 cut(s)	116, 188, 860, 1947, 1951, 2136, 2715
TaqII	GACCGA	1 cut(s)	299
TatI	WGTACW	1 cut(s)	124
TauI	GCSGC	3 cut(s)	278, 1058, 1061
TfiI	GAWTC	4 cut(s)	782, 2413, 2677, 2703
Tru1I	TTAA	5 cut(s)	411, 1167, 1286, 1841, 2498
Tru9I	TTAA	5 cut(s)	411, 1167, 1286, 1841, 2498
TscAI	CASTG	3 cut(s)	1087, 1824, 2713
TseFI	GTSAC	4 cut(s)	1078, 1704, 1892, 2741
TseI	GCWGC	4 cut(s)	1367, 1370, 1733, 2465
Tsp45I	GTSAC	4 cut(s)	1078, 1704, 1892, 2741
TspRI	CASTG	3 cut(s)	1087, 1824, 2713
Tth111I	GACNNNGTC	1 cut(s)	865
VpaK11BI	GGWCC	2 cut(s)	104, 311
XagI	CCTNNNNNAGG	2 cut(s)	877, 1806
XapI	RAATTY	8 cut(s)	512, 601, 856, 1228, 1853, 1971, 2087, 2359
XceI	RCATGY	4 cut(s)	1186, 2313, 2465, 2841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312
XhoI	CTCGAG	2 cut(s)	115, 2135
XmiI	GTMKAC	1 cut(s)	1254
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	3 cut(s)	1350, 1986, 2739
Zsp2I	ATGCAT	1 cut(s)	2228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.