Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003542

Physical Location & Seq

Genomic Coordinates Reverse (-)

23379031 .. 23385973

Gene Structure 6943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3669 bp

ATGGCTGGAGGAAGAATAAGGGCAAGGCTACGGCGGAGCCACCTCTACACATTCTTGCGTAAGCCAAGGGGCAATGAGTCAGGGGCACCTCATCCAATCCAAGGTCCTGGGTACTCGAGAACTGTACATTGTAACCAACCTCTGCTCCATCAAAAGAAACCTTACAAATACCGTTCAAATTACATATCGACCACAAAGTATAACCCGATCACGTTCTTGCCCAAGGCACTCTTTGAGCAGTTCAGACGGGTTGCCAATATCTATTTCCTTTTGGCTGCCGGTCTTTCACTCACTTCTGTTTCTCCATTCGGTCCTTGGAGCATGATAGCTCCTTTGGCTTTTGTTGTTGGTCTCAGTATGGCAAAGGAAGCTATGGAAGACTGGAATAGGTTCTTGCAGGACATGAAGGTTAATCTCCGGAAAGTAAATGTTCATAAAGGAGATGGTGTTTTCGGATATAGGCCATGGCATAAGATTGTGGTTGGAGATGTGGTGAAAGTGGAAAAGGATAAATTCTTTCCTGCTGATCTGCTTCTATTGTCGTCAAGTTATGAGGATGGTTTCTGCTATGTTGAGACTATGAACTTAGATGGCGAGACAAATTTGAAGGTCAAGAGATGCTTGGAGGTAACCTCACCTTTGGATGACGATGGAGTTTTCAAGGACTTCACAGCAACAGTTCAATGTGAAGATCCAAATCCCAATCTTTATTCCTTTGTGGGTAATCTTGATCATGACCGGCAGATTTATCCTCTTGAACCTGGTCAGATACTCCTGAGAGATTCAAAGCTCAGGAATACAAGTTATATCTATGGGGTAGTGATATTTACAGGTCATGATAGCAAAGTCATGCAGAATTCGACAAAGTCCCCCTCAAAAAGGAGTGGAATAGAAAAGAAAATGGACAAGATTATCTACATCCTTTTCTTCATCCTTTTAGTGATCTCCTTGATCAGCTCAATAGGGTTTGGTGTGAAGACAAGAAAAGATATGCCATCGGCATGGTACTTACGACCAGACGATGCAGAAGATATGTATAGCCCAAAAAAACCTGCTGCGGCTGGCGCTATCCATCTGGTCACTGCTCTCATCCTTTATGGATATCTAATACCCATCTCTCTTTATGTTTCAATTGAGGTTGTGAAGGTCTTGCAAGCAAAGTTCATTAACAATGACATACACATGTATGATGAAGAGCATGGAACTCCTGCTCAAGCCCGGACATCAAATTTGAATGAGGAGTTAGGCCAGGTAGACACGATCCTTTCTGACAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTCTGAAGTGTTGCATTGCTGGCATTGCATACGGTGTCCGCTCTAGTGAAGTTGAACTTGCAGCAGCAAAACAGATGGCTACTGACCTTGATGATCAGGACGAGCATGATGAAGAACTTGCCAATGTTCCCAGGAATAAACATAGTCAACAAGTATCATGGGGGAATGAAGTAGGATCAGAAATTGAGCTGGAAACTGTTGTTACATCCAAGGATGGTAAGGATCCGAAACCTGCCATAAAAGGGTTTAGCTTTGTGGACAATCGCCTCATGGATGGAAATTGGTTGAGAGAGCCCACCTGGGATGTGATTTTATTATTTTTGCGGATTTTAGCCGTTTGCCATACTGCAATTCCTGAGCTAAATGAAGAGACTGGCCAATATACATATGAAGCAGAGTCACCCGACGAAGGAGCTTTTCTTGTTGCAGCACGTGAGTTAGGTTTTGAGTTCTGTAAAAGAAATCAGTCAAGTGTGTATGTCCGCGAAAAGTATCCTGATCCAGGACAACCAGTGGAAAGGGAGTATCAAGTTTTAAATCTATTGGAATTCACCAGCAAAAGGAAGCGTATGTCAGTAATTGTGCGTGACGAAGATGGGCAATTATTACTTTTCTGCAAAGGTGCTGACAGGACAAATAATGTGAATGGAAGAATTTATGAGGAAGCTAGTACCAAGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACGTTGGCACTTGCTTATAAAAAGCTTGAGGAGTCCGAGTATTCTGCTTGGAACAACGAATTTCAGAAGGCAAAATCATCTATTGGGGCTGATAGGGAGGTGATGCTCGAGCTAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAGGGGTGCCCCAATGCATAGACAATCTTGCACAAGCTGGTCTCAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATAGGATTTGCATGTAGTTTGCTCCGACAGGGCATGAAGCAGATCTGTATATCAACAGCAAATTTAGACACATTGGGACAAGATGGAAAAGAGGCTGTGAAAGACAACATTTTGAATCAAATTACAAATGCCTCTCAAATGATCAAGTTGGAAACAGATCCACATGCAGCGTTTGCACTAATTATTGATGGAAAAACTTTAACCTATGCTTTGGACGCTGATATGAAGCATCTATTCTTGGAATTAGCTGTTGATTGTGCATCTGTCATATGCTGTCGTGTCTCCCCTAAGCAGAAGGCATTGGTAACGAGGTTAGTAAGACAAGGAACTGGGAAGACTACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCTGATATTGGTGTTGGAATCAGTGGTGTCGAAGGTATGCAGGCTGTGATGGCTAGTGACTTTGCTATTGCCCAGTTTCGGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGATTTGCTATTTCTTCTACAAAAATATAGCATTTGGTCTGACCCTCTTCTACTTTGAGGCATTCACGGGATTTTCGGGGCAATCAATATATGCTGACTTGTACATGCTAACGTTCAATGTTATTCTTACCTCATTACCTGTCATATCACTTGGAGTATTTGAACAAGATGTTTCTTCCGAGGTCTGCTTACAGTTCCCTGCATTATATCAGCAAGGAGCCCGAAATTTGTTCTTCGACTGGTACAGAATACTGGGGTGGATGGGCAATGGTGTATATTGCTCTCTCATTGTCTTCTTCCTCAACATTATCATATTCAAAGACCAGTCCTTCAGGTCTGATGGCCAGATTGCTGATATGGCTGCTATGGGTACAACTATGTTCAGTTGCATCATATGGGCCGTCAACTGCCAGATTGCTCTGGCAATGTGTCACTTTACATGGATTCAACACTGCTTTATTTGGGGCAGTATTGCAATGTGGTACCTATTTCTCTTAATTTACGGCATAGTGACACCAACGTGGTCGGGAAATGCCTACCAGATTCTAGTTGAAGTCCTCGGTCCTGCACCTATCTTTTGGTCAGCCACCCTATTAGTTACTCTTGCTTGTAATCTCCCTTACATTGTCCACATAGCCTTCCAAAGAAGTTTCAATCCAATGGATCATCATATCATCCAAGAAATCAAATACTACCGGAAAGATGTTCAGGATCAACGCATGTGGAAGAGGGAGGCATCTAAAGCAAGACAAGAAACCAAGATTGGGTTCTCAGCTCGGGTAGATGCAAAGATCAGACAATTGAGAGCGAGGCTGCACAAGAAGCAACCCCAGAGTAACGCTATGTCCCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1222

Amino Acids

137.85

Weight (kDa)

6.52

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	42 - 109	7.5e-24	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	542 - 733	2.3e-17	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	907 - 1157	9e-88	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17500 AT1G17500 AT1G54280 AT1G54280 AT1G54280 AT1G72700 AT1G72700 AT1G72700 AT3G13900 AT3G13900 AT3G13900
fragaria_vesca	FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000 FvH4_6g34000
malus_domestica	MD09G1190200.v1.1 MD17G1173300.v1.1
prunus_persica	Prupe.3G046100_v2.0.a1 Prupe.3G046100_v2.0.a1
pyrus_communis	pycom09g10670 pycom17g17330
rosa_chinensis	RchiOBHm_Chr2g0143971
rosa_laevigata	RLG00000020069
rosa_multiflora	Rmu_ssc0000393.1_g000036
rosa_roxburghii	Rroxscaffold_2G00101430
rosa_rugosa	Rorug02G0385400 Rorug02G0385500
rosa_samantha	Rh2AG438000 Rh2BG446400
rosa_wichuraiana	Rw2G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2034
Acc36I	ACCTGC	3 cut(s)	1060, 1298, 1546
Acc65I	GGTACC	1 cut(s)	3294
AccB1I	GGYRCC	3 cut(s)	85, 2203, 3294
AccBSI	CCGCTC	1 cut(s)	1347
AccI	GTMKAC	1 cut(s)	1254
AccII	CGCG	1 cut(s)	1791
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	5 cut(s)	34, 1058, 1345, 1630, 1789
AclI	AACGTT	1 cut(s)	2924
AclWI	GGATC	9 cut(s)	686, 1255, 1489, 1523, 1536, 1799, 2438, 3483, 3531
AcoI	YGGCCR	2 cut(s)	1681, 3154
AcsI	RAATTY	9 cut(s)	512, 601, 856, 1228, 1853, 1959, 2075, 2347, 3037
AcuI	CTGAAG	2 cut(s)	1331, 3127
AcvI	CACGTG	1 cut(s)	1739
AfaI	GTAC	9 cut(s)	113, 126, 1007, 1978, 2017, 2915, 3056, 3184, 3296
AfiI	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1715, 1808, 1866, 2751, 3576
AflIII	ACRYGT	1 cut(s)	1182
AjnI	CCWGG	6 cut(s)	106, 760, 1248, 1436, 1604, 1807
AjuI	GAANNNNNNNTTGG	8 cut(s)	248, 280, 2664, 2696, 3558, 3563, 3590, 3595
AleI	CACNNNNGTG	1 cut(s)	3331
Alw26I	GTCTC	7 cut(s)	356, 569, 590, 1670, 2243, 2572, 2758
AlwI	GGATC	9 cut(s)	686, 1255, 1489, 1523, 1536, 1799, 2438, 3483, 3531
Ama87I	CYCGRG	3 cut(s)	115, 2123, 3588
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	5 cut(s)	461, 1246, 1681, 3154, 3210
ApeKI	GCWGC	8 cut(s)	275, 1055, 1367, 1370, 1733, 2453, 3173, 3625
ApoI	RAATTY	9 cut(s)	512, 601, 856, 1228, 1853, 1959, 2075, 2347, 3037
ArsI	GACNNNNNNTTYG	2 cut(s)	1213, 1245
Asp700I	GAANNNNTTC	1 cut(s)	389
Asp718I	GGTACC	1 cut(s)	3294
AspLEI	GCGC	1 cut(s)	1067
AspS9I	GGNCC	4 cut(s)	104, 311, 3210, 3374
AsuC2I	CCSGG	1 cut(s)	1219
AsuHPI	GGTGA	6 cut(s)	505, 627, 1698, 1849, 2128, 2651
AvaI	CYCGRG	3 cut(s)	115, 2123, 3588
AvaII	GGWCC	3 cut(s)	104, 311, 3374
BaeGI	GKGCMC	2 cut(s)	88, 2208
BalI	TGGCCA	2 cut(s)	1683, 3156
BamHI	GGATCC	1 cut(s)	1528
BanI	GGYRCC	3 cut(s)	85, 2203, 3294
BanII	GRGCYC	2 cut(s)	1602, 3034
BbrPI	CACGTG	1 cut(s)	1739
BbsI	GAAGAC	4 cut(s)	384, 983, 2627, 3097
BbvI	GCAGC	8 cut(s)	262, 1042, 1379, 1382, 1745, 2465, 3160, 3612
BceAI	ACGGC	4 cut(s)	47, 1625, 3197, 3331
BcgI	CGANNNNNNTGC	2 cut(s)	2042, 2076
BciT130I	CCWGG	6 cut(s)	108, 762, 1250, 1438, 1606, 1809
BciVI	GTATCC	1 cut(s)	1809
BclI	TGATCA	5 cut(s)	730, 951, 1399, 2157, 2427
BcnI	CCSGG	1 cut(s)	1219
BcoDI	GTCTC	7 cut(s)	356, 569, 590, 1670, 2243, 2572, 2758
BfaI	CTAG	5 cut(s)	1350, 1974, 2129, 2727, 3359
BfmI	CTRYAG	1 cut(s)	2172
BfoI	RGCGCY	1 cut(s)	1068
BfuAI	ACCTGC	3 cut(s)	1060, 1298, 1546
BfuI	GTATCC	1 cut(s)	1809
BglII	AGATCT	2 cut(s)	2244, 2328
BisI	GCNGC	9 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2454, 3174, 3626
BlsI	GCNGC	9 cut(s)	277, 1057, 1060, 1369, 1372, 1735, 2455, 3175, 3627
Bme1390I	CCNGG	7 cut(s)	108, 762, 1219, 1250, 1438, 1606, 1809
Bme18I	GGWCC	3 cut(s)	104, 311, 3374
BmeT110I	CYCGRG	3 cut(s)	115, 2123, 3588
BmgT120I	GGNCC	4 cut(s)	104, 311, 3210, 3374
BmiI	GGNNCC	6 cut(s)	38, 87, 1530, 2205, 3031, 3296
BmrFI	CCNGG	7 cut(s)	108, 762, 1219, 1250, 1438, 1606, 1809
BmrI	ACTGGG	3 cut(s)	2625, 2740, 3074
BmsI	GCATC	8 cut(s)	608, 1012, 2109, 2524, 2555, 3210, 3557, 3586
BmuI	ACTGGG	3 cut(s)	2625, 2740, 3074
BpiI	GAAGAC	4 cut(s)	384, 983, 2627, 3097
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	3 cut(s)	791, 1662, 2574
BpuEI	CTTGAG	3 cut(s)	1197, 2063, 2225
BpuMI	CCSGG	1 cut(s)	1219
BsaAI	YACGTR	1 cut(s)	1739
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	2 cut(s)	356, 2243
BsaWI	WCCGGW	2 cut(s)	417, 3507
BsaXI	ACNNNNNCTCC	8 cut(s)	129, 159, 432, 462, 477, 507, 2039, 2069
Bsc4I	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1715, 1808, 1866, 2751, 3576
Bse118I	RCCGGY	2 cut(s)	278, 738
Bse1I	ACTGG	9 cut(s)	386, 1282, 1684, 1817, 2620, 2746, 3056, 3069, 3136
Bse3DI	GCAATG	6 cut(s)	79, 1320, 1329, 3085, 3243, 3294
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	6 cut(s)	108, 762, 1250, 1438, 1606, 1809
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1715, 1808, 1866, 2751, 3576
BseMI	GCAATG	6 cut(s)	79, 1320, 1329, 3085, 3243, 3294
BseMII	CTCAG	6 cut(s)	367, 767, 805, 1653, 2822, 3597
BseNI	ACTGG	9 cut(s)	386, 1282, 1684, 1817, 2620, 2746, 3056, 3069, 3136
BseRI	GAGGAG	2 cut(s)	1253, 2060
BseSI	GKGCMC	2 cut(s)	88, 2208
BseXI	GCAGC	8 cut(s)	262, 1042, 1379, 1382, 1745, 2465, 3160, 3612
BseYI	CCCAGC	1 cut(s)	2006
BsgI	GTGCAG	2 cut(s)	3363, 3611
Bsh1236I	CGCG	1 cut(s)	1791
BshFI	GGCC	5 cut(s)	463, 1248, 1683, 3156, 3212
BshNI	GGYRCC	3 cut(s)	85, 2203, 3294
BsiHKCI	CYCGRG	3 cut(s)	115, 2123, 3588
BsiSI	CCGG	5 cut(s)	279, 418, 739, 1219, 3508
BsiWI	CGTACG	1 cut(s)	2015
BslFI	GGGAC	3 cut(s)	853, 2376, 3643
BslI	CCNNNNNNNGG	8 cut(s)	101, 879, 1548, 1715, 1808, 1866, 2751, 3576
BsmAI	GTCTC	7 cut(s)	356, 569, 590, 1670, 2243, 2572, 2758
BsmFI	GGGAC	3 cut(s)	853, 2376, 3643
BsmI	GAATGC	1 cut(s)	2873
BsnI	GGCC	5 cut(s)	463, 1248, 1683, 3156, 3212
Bso31I	GGTCTC	2 cut(s)	356, 2243
BsoBI	CYCGRG	3 cut(s)	115, 2123, 3588
Bsp1286I	GDGCHC	4 cut(s)	88, 1602, 2208, 3034
Bsp13I	TCCGGA	1 cut(s)	417
Bsp1407I	TGTACA	2 cut(s)	124, 2913
Bsp19I	CCATGG	2 cut(s)	464, 2779
BspACI	CCGC	5 cut(s)	34, 1058, 1345, 1630, 1789
BspANI	GGCC	5 cut(s)	463, 1248, 1683, 3156, 3212
BspCNI	CTCAG	6 cut(s)	366, 768, 804, 1654, 2821, 3596
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	1791
BspHI	TCATGA	2 cut(s)	733, 835
BspLI	GGNNCC	6 cut(s)	38, 87, 1530, 2205, 3031, 3296
BspMI	ACCTGC	3 cut(s)	1060, 1298, 1546
BspPI	GGATC	9 cut(s)	686, 1255, 1489, 1523, 1536, 1799, 2438, 3483, 3531
BspQI	GCTCTTC	1 cut(s)	1188
BspT107I	GGYRCC	3 cut(s)	85, 2203, 3294
BspTNI	GGTCTC	2 cut(s)	356, 2243
BsrBI	CCGCTC	1 cut(s)	1347
BsrDI	GCAATG	6 cut(s)	79, 1320, 1329, 3085, 3243, 3294
BsrFI	RCCGGY	2 cut(s)	278, 738
BsrGI	TGTACA	2 cut(s)	124, 2913
BsrI	ACTGG	9 cut(s)	386, 1282, 1684, 1817, 2620, 2746, 3056, 3069, 3136
BssAI	RCCGGY	2 cut(s)	278, 738
BssT1I	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2779
Bst2UI	CCWGG	6 cut(s)	108, 762, 1250, 1438, 1606, 1809
Bst4CI	ACNGT	6 cut(s)	124, 173, 679, 1340, 1504, 3006
Bst6I	CTCTTC	4 cut(s)	1188, 1668, 2864, 3533
BstAPI	GCANNNNNTGC	1 cut(s)	2459
BstAUI	TGTACA	2 cut(s)	124, 2913
BstBAI	YACGTR	1 cut(s)	1739
BstC8I	GCNNGC	4 cut(s)	1063, 1155, 1327, 2715
BstDEI	CTNAG	8 cut(s)	353, 586, 776, 791, 1662, 2574, 2808, 3583
BstDSI	CCRYGG	2 cut(s)	464, 2779
BstEII	GGTNACC	1 cut(s)	628
BstENI	CCTNNNNNAGG	2 cut(s)	877, 1806
BstFNI	CGCG	1 cut(s)	1791
BstH2I	RGCGCY	1 cut(s)	1068
BstHHI	GCGC	1 cut(s)	1067
BstMAI	GTCTC	7 cut(s)	356, 569, 590, 1670, 2243, 2572, 2758
BstNI	CCWGG	6 cut(s)	108, 762, 1250, 1438, 1606, 1809
BstNSI	RCATGY	5 cut(s)	1186, 2301, 2453, 2920, 3535
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	7 cut(s)	106, 760, 1217, 1248, 1436, 1604, 1807
BstSFI	CTRYAG	1 cut(s)	2172
BstSLI	GKGCMC	2 cut(s)	88, 2208
BstUI	CGCG	1 cut(s)	1791
BstV1I	GCAGC	8 cut(s)	262, 1042, 1379, 1382, 1745, 2465, 3160, 3612
BstV2I	GAAGAC	4 cut(s)	384, 983, 2627, 3097
BstX2I	RGATCY	5 cut(s)	691, 1528, 2244, 2328, 2443
BstXI	CCANNNNNNTGG	2 cut(s)	107, 1002
BstYI	RGATCY	5 cut(s)	691, 1528, 2244, 2328, 2443
BsuI	GTATCC	1 cut(s)	1809
BsuRI	GGCC	5 cut(s)	463, 1248, 1683, 3156, 3212
BtgI	CCRYGG	2 cut(s)	464, 2779
BtsI	GCAGTG	2 cut(s)	1080, 3262
BtsIMutI	CAGTG	4 cut(s)	1080, 1824, 2701, 3262
BveI	ACCTGC	3 cut(s)	1060, 1298, 1546
Cac8I	GCNNGC	4 cut(s)	1063, 1155, 1327, 2715
CciI	TCATGA	2 cut(s)	733, 835
CfoI	GCGC	1 cut(s)	1067
Cfr10I	RCCGGY	2 cut(s)	278, 738
Cfr13I	GGNCC	4 cut(s)	104, 311, 3210, 3374
CseI	GACGC	1 cut(s)	2510
CsiI	ACCWGGT	1 cut(s)	760
Csp6I	GTAC	9 cut(s)	112, 125, 1006, 1977, 2016, 2914, 3055, 3183, 3295
CspCI	CAANNNNNGTGG	2 cut(s)	3515, 3550
CviQI	GTAC	9 cut(s)	112, 125, 1006, 1977, 2016, 2914, 3055, 3183, 3295
DdeI	CTNAG	8 cut(s)	353, 586, 776, 791, 1662, 2574, 2808, 3583
DraI	TTTAAA	1 cut(s)	1842
EaeI	YGGCCR	2 cut(s)	1681, 3154
Eam1104I	CTCTTC	4 cut(s)	1188, 1668, 2864, 3533
EarI	CTCTTC	4 cut(s)	1188, 1668, 2864, 3533
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2779
Eco24I	GRGCYC	2 cut(s)	1602, 3034
Eco31I	GGTCTC	2 cut(s)	356, 2243
Eco32I	GATATC	1 cut(s)	1103
Eco47I	GGWCC	3 cut(s)	104, 311, 3374
Eco57I	CTGAAG	2 cut(s)	1331, 3127
Eco72I	CACGTG	1 cut(s)	1739
Eco88I	CYCGRG	3 cut(s)	115, 2123, 3588
Eco91I	GGTNACC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	2 cut(s)	877, 1806
EcoO109I	RGGNCCY	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	2 cut(s)	856, 1853
EcoRII	CCWGG	6 cut(s)	106, 760, 1248, 1436, 1604, 1807
EcoRV	GATATC	1 cut(s)	1103
EcoT14I	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2779
EcoT22I	ATGCAT	1 cut(s)	2216
EcoT38I	GRGCYC	2 cut(s)	1602, 3034
ErhI	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2779
FalI	AAGNNNNNCTT	6 cut(s)	215, 247, 605, 637, 1347, 1379
FaqI	GGGAC	3 cut(s)	853, 2376, 3643
FauNDI	CATATG	3 cut(s)	1693, 2555, 3206
FbaI	TGATCA	5 cut(s)	730, 951, 1399, 2157, 2427
FblI	GTMKAC	1 cut(s)	1254
Fnu4HI	GCNGC	9 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2454, 3174, 3626
FriOI	GRGCYC	2 cut(s)	1602, 3034
Fsp4HI	GCNGC	9 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2454, 3174, 3626
FspBI	CTAG	5 cut(s)	1350, 1974, 2129, 2727, 3359
GlaI	GCGC	1 cut(s)	1066
GluI	GCNGC	9 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2454, 3174, 3626
GsaI	CCCAGC	1 cut(s)	2010
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	1068
HaeIII	GGCC	5 cut(s)	463, 1248, 1683, 3156, 3212
HapII	CCGG	5 cut(s)	279, 418, 739, 1219, 3508
HgaI	GACGC	1 cut(s)	2510
HhaI	GCGC	1 cut(s)	1067
Hin6I	GCGC	1 cut(s)	1065
HinP1I	GCGC	1 cut(s)	1065
HincII	GTYRAC	3 cut(s)	1454, 2256, 3217
HindII	GTYRAC	3 cut(s)	1454, 2256, 3217
HindIII	AAGCTT	1 cut(s)	2039
HinfI	GANTC	9 cut(s)	77, 782, 1703, 2048, 2401, 2665, 2691, 3256, 3355
HpaII	CCGG	5 cut(s)	279, 418, 739, 1219, 3508
HphI	GGTGA	6 cut(s)	505, 627, 1698, 1849, 2128, 2651
Hpy166II	GTNNAC	6 cut(s)	1255, 1454, 1564, 2256, 3217, 3442
Hpy8I	GTNNAC	6 cut(s)	1255, 1454, 1564, 2256, 3217, 3442
Hpy99I	CGWCG	1 cut(s)	1715
HpyAV	CCTTC	9 cut(s)	400, 601, 1138, 1709, 2077, 2575, 2699, 3151, 3460
HpyCH4III	ACNGT	6 cut(s)	124, 173, 679, 1340, 1504, 3006
HpyCH4IV	ACGT	5 cut(s)	212, 1738, 2018, 2924, 3332
HpyF3I	CTNAG	8 cut(s)	353, 586, 776, 791, 1662, 2574, 2808, 3583
HpySE526I	ACGT	5 cut(s)	212, 1738, 2018, 2924, 3332
HspAI	GCGC	1 cut(s)	1065
Kpn2I	TCCGGA	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	3298
Ksp22I	TGATCA	5 cut(s)	730, 951, 1399, 2157, 2427
LguI	GCTCTTC	1 cut(s)	1188
LmnI	GCTCC	7 cut(s)	36, 150, 318, 334, 1718, 2313, 3029
Lsp1109I	GCAGC	8 cut(s)	262, 1042, 1379, 1382, 1745, 2465, 3160, 3612
LweI	GCATC	8 cut(s)	608, 1012, 2109, 2524, 2555, 3210, 3557, 3586
MabI	ACCWGGT	1 cut(s)	760
MaeI	CTAG	5 cut(s)	1350, 1974, 2129, 2727, 3359
MaeII	ACGT	5 cut(s)	212, 1738, 2018, 2924, 3332
MbiI	CCGCTC	1 cut(s)	1347
MfeI	CAATTG	3 cut(s)	1131, 2634, 3611
MflI	RGATCY	5 cut(s)	691, 1528, 2244, 2328, 2443
MhlI	GDGCHC	4 cut(s)	88, 1602, 2208, 3034
MlsI	TGGCCA	2 cut(s)	1683, 3156
MluNI	TGGCCA	2 cut(s)	1683, 3156
MlyI	GAGTC	3 cut(s)	86, 1712, 2057
MmeI	TCCRAC	5 cut(s)	463, 2335, 2415, 2638, 2668
Mox20I	TGGCCA	2 cut(s)	1683, 3156
Mph1103I	ATGCAT	1 cut(s)	2216
MroI	TCCGGA	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	2 cut(s)	1683, 3156
MseI	TTAA	6 cut(s)	411, 1167, 1286, 1841, 2486, 3308
MslI	CAYNNNNRTG	5 cut(s)	1000, 1181, 1185, 1989, 3331
Msp20I	TGGCCA	2 cut(s)	1683, 3156
MspA1I	CMGCKG	1 cut(s)	2177
MspI	CCGG	5 cut(s)	279, 418, 739, 1219, 3508
MspR9I	CCNGG	7 cut(s)	108, 762, 1219, 1250, 1438, 1606, 1809
MunI	CAATTG	3 cut(s)	1131, 2634, 3611
Mva1269I	GAATGC	1 cut(s)	2873
MvaI	CCWGG	6 cut(s)	108, 762, 1250, 1438, 1606, 1809
MvnI	CGCG	1 cut(s)	1791
NciI	CCSGG	1 cut(s)	1219
NcoI	CCATGG	2 cut(s)	464, 2779
NdeI	CATATG	3 cut(s)	1693, 2555, 3206
NlaIV	GGNNCC	6 cut(s)	38, 87, 1530, 2205, 3031, 3296
NmuCI	GTSAC	6 cut(s)	1078, 1704, 1892, 2729, 3242, 3322
NsiI	ATGCAT	1 cut(s)	2216
NspI	RCATGY	5 cut(s)	1186, 2301, 2453, 2920, 3535
OliI	CACNNNNGTG	1 cut(s)	3331
PaeR7I	CTCGAG	2 cut(s)	115, 2123
PagI	TCATGA	2 cut(s)	733, 835
PciI	ACATGT	1 cut(s)	1182
PciSI	GCTCTTC	1 cut(s)	1188
PctI	GAATGC	1 cut(s)	2873
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	6 cut(s)	782, 2401, 2665, 2691, 3256, 3355
Pfl23II	CGTACG	1 cut(s)	2015
PflFI	GACNNNGTC	1 cut(s)	865
PfoI	TCCNGGA	1 cut(s)	1807
PkrI	GCNGC	9 cut(s)	277, 1057, 1060, 1369, 1372, 1735, 2455, 3175, 3627
PleI	GAGTC	3 cut(s)	85, 1711, 2056
PmaCI	CACGTG	1 cut(s)	1739
PmlI	CACGTG	1 cut(s)	1739
PpsI	GAGTC	3 cut(s)	85, 1711, 2056
Ppu21I	YACGTR	1 cut(s)	1739
PpuMI	RGGWCCY	1 cut(s)	104
PscI	ACATGT	1 cut(s)	1182
PsiI	TTATAA	1 cut(s)	2034
Psp1406I	AACGTT	1 cut(s)	2924
Psp5II	RGGWCCY	1 cut(s)	104
Psp6I	CCWGG	6 cut(s)	106, 760, 1248, 1436, 1604, 1807
PspCI	CACGTG	1 cut(s)	1739
PspEI	GGTNACC	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	2006
PspGI	CCWGG	6 cut(s)	106, 760, 1248, 1436, 1604, 1807
PspLI	CGTACG	1 cut(s)	2015
PspN4I	GGNNCC	6 cut(s)	38, 87, 1530, 2205, 3031, 3296
PspPI	GGNCC	4 cut(s)	104, 311, 3210, 3374
PspPPI	RGGWCCY	1 cut(s)	104
PspXI	VCTCGAGB	1 cut(s)	2123
PsuI	RGATCY	5 cut(s)	691, 1528, 2244, 2328, 2443
PsyI	GACNNNGTC	1 cut(s)	865
PvuII	CAGCTG	1 cut(s)	2177
RsaI	GTAC	9 cut(s)	113, 126, 1007, 1978, 2017, 2915, 3056, 3184, 3296
RsaNI	GTAC	9 cut(s)	112, 125, 1006, 1977, 2016, 2914, 3055, 3183, 3295
RseI	CAYNNNNRTG	5 cut(s)	1000, 1181, 1185, 1989, 3331
SapI	GCTCTTC	1 cut(s)	1188
SaqAI	TTAA	6 cut(s)	411, 1167, 1286, 1841, 2486, 3308
SatI	GCNGC	9 cut(s)	276, 1056, 1059, 1368, 1371, 1734, 2454, 3174, 3626
Sau96I	GGNCC	4 cut(s)	104, 311, 3210, 3374
SchI	GAGTC	3 cut(s)	86, 1712, 2057
ScrFI	CCNGG	7 cut(s)	108, 762, 1219, 1250, 1438, 1606, 1809
SduI	GDGCHC	4 cut(s)	88, 1602, 2208, 3034
SexAI	ACCWGGT	1 cut(s)	760
SfaNI	GCATC	8 cut(s)	608, 1012, 2109, 2524, 2555, 3210, 3557, 3586
SfcI	CTRYAG	1 cut(s)	2172
Sfr274I	CTCGAG	2 cut(s)	115, 2123
SinI	GGWCC	3 cut(s)	104, 311, 3374
SlaI	CTCGAG	2 cut(s)	115, 2123
SmiMI	CAYNNNNRTG	5 cut(s)	1000, 1181, 1185, 1989, 3331
SmlI	CTYRAG	5 cut(s)	115, 1212, 2042, 2123, 2240
SmoI	CTYRAG	5 cut(s)	115, 1212, 2042, 2123, 2240
SsiI	CCGC	5 cut(s)	34, 1058, 1345, 1630, 1789
SspMI	CTAG	5 cut(s)	1350, 1974, 2129, 2727, 3359
StyD4I	CCNGG	7 cut(s)	106, 760, 1217, 1248, 1436, 1604, 1807
StyI	CCWWGG	7 cut(s)	65, 100, 222, 314, 464, 1515, 2779
TaaI	ACNGT	6 cut(s)	124, 173, 679, 1340, 1504, 3006
TaiI	ACGT	5 cut(s)	215, 1741, 2021, 2927, 3335
TaqI	TCGA	6 cut(s)	116, 188, 860, 2124, 2703, 3048
TaqII	GACCGA	2 cut(s)	299, 3362
TatI	WGTACW	2 cut(s)	124, 2913
TauI	GCSGC	1 cut(s)	1061
TfiI	GAWTC	6 cut(s)	782, 2401, 2665, 2691, 3256, 3355
Tru1I	TTAA	6 cut(s)	411, 1167, 1286, 1841, 2486, 3308
Tru9I	TTAA	6 cut(s)	411, 1167, 1286, 1841, 2486, 3308
TscAI	CASTG	4 cut(s)	1087, 1824, 2701, 3269
TseFI	GTSAC	6 cut(s)	1078, 1704, 1892, 2729, 3242, 3322
TseI	GCWGC	8 cut(s)	275, 1055, 1367, 1370, 1733, 2453, 3173, 3625
Tsp45I	GTSAC	6 cut(s)	1078, 1704, 1892, 2729, 3242, 3322
TspRI	CASTG	4 cut(s)	1087, 1824, 2701, 3269
Tth111I	GACNNNGTC	1 cut(s)	865
VpaK11BI	GGWCC	3 cut(s)	104, 311, 3374
XagI	CCTNNNNNAGG	2 cut(s)	877, 1806
XapI	RAATTY	9 cut(s)	512, 601, 856, 1228, 1853, 1959, 2075, 2347, 3037
XceI	RCATGY	5 cut(s)	1186, 2301, 2453, 2920, 3535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312
XhoI	CTCGAG	2 cut(s)	115, 2123
XmiI	GTMKAC	1 cut(s)	1254
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	5 cut(s)	1350, 1974, 2129, 2727, 3359
Zsp2I	ATGCAT	1 cut(s)	2216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.