AT3G14200

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010346
Physical Location & Seq
Reverse (-)
4712574 .. 4714698
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14200.1

Sequence Viewer

Length: 693 bp
ATGGCGTCCAGTAATAGCGAGAAGATCAACGAGAATCTGTACGCTGTTCTGGGTTTGAAGAAGGAATGTTCTAAGACGGAGCTCCGTTCTGCTTATAAGAAGCTTGCTCTCAGATGGCATCCAGATCGTTGTTCGTCAATGGAGTTTGTAGAAGAAGCAAAGAAGAAATTTCAGGCAATCCAAGAAGCCTACTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGATGTTGGTGCTTATAATACTGATGATGATGATGACCAAAACGGAATGGGAGATTTCTTGAACGAAATGGCGACTATGATGAATCAATCCAAGCCTAGTGATAATAACACAGGGGACAGTTTTGAACAACTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACGCTGCAGCATTCCCATCATCATCGTCCTGCTCCACTTCAAATTTCACTTCATCTCGTAGTTTTGTATTCGATACAAATTCTCAGCGGTCATCTTCGTTTGCGACAAGTTCGATGGGGATGAATAATGATCCTTTCGGATATGACCCGAGAGCTCATTCCTTCTCTTTAGGGGTGGACCATCAGCAAGAGTTCAAGAAAGGGAAAAACAATGGCGGAAGAAGAAACAGGAGAAAGAACAATGTTCCATCGGCTGGTCACGAAACGTCGTCGTCAAACAACTATGGAGTCCCCACCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

230

Amino Acids

25.64

Weight (kDa)

5.62

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 12 - 77 3.6e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 96, 243
AccB7I CCANNNNNTGG 1 cut(s) 644
AciI CCGC 2 cut(s) 478, 606
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 3 cut(s) 167, 433, 469
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 216, 644
AgsI TTSAA 6 cut(s) 58, 289, 353, 386, 432, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 82, 103, 545
AluI AGCT 3 cut(s) 82, 103, 545
Alw21I GWGCWC 2 cut(s) 84, 547
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 538
ApeKI GCWGC 2 cut(s) 395, 398
ApoI RAATTY 3 cut(s) 167, 433, 469
AspS9I GGNCC 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 1 cut(s) 568
BanII GRGCYC 2 cut(s) 84, 547
Bbv12I GWGCWC 2 cut(s) 84, 547
BbvI GCAGC 2 cut(s) 382, 410
BccI CCATC 5 cut(s) 108, 415, 499, 579, 646
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 396
BglII AGATCT 1 cut(s) 364
BisI GCNGC 2 cut(s) 396, 399
BlsI GCNGC 2 cut(s) 397, 400
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 221
BmsI GCATC 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 644
Bse1I ACTGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 118, 516
BseLI CCNNNNNNNGG 2 cut(s) 216, 644
BseMII CTCAG 2 cut(s) 124, 488
BseNI ACTGG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 382, 410
BsiHKAI GWGCWC 2 cut(s) 84, 547
BsiHKCI CYCGRG 1 cut(s) 538
BslFI GGGAC 2 cut(s) 356, 665
BslI CCNNNNNNNGG 2 cut(s) 216, 644
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 2 cut(s) 356, 665
BsmI GAATGC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 538
Bsp1286I GDGCHC 2 cut(s) 84, 547
Bsp143I GATC 4 cut(s) 24, 124, 364, 520
BspACI CCGC 2 cut(s) 478, 606
BspCNI CTCAG 2 cut(s) 123, 487
BspLI GGNNCC 1 cut(s) 221
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 1 cut(s) 515
BsrI ACTGG 1 cut(s) 9
BssMI GATC 4 cut(s) 24, 124, 364, 520
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 347
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 72, 110, 474
BstF5I GGATG 2 cut(s) 118, 516
BstKTI GATC 4 cut(s) 27, 127, 367, 523
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 4 cut(s) 24, 124, 364, 520
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 382, 410
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtsCI GGATG 2 cut(s) 118, 516
Cac8I GCNNGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 568
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 6 cut(s) 82, 103, 188, 322, 545, 644
CviKI_1 RGCY 6 cut(s) 82, 103, 188, 322, 545, 644
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 3 cut(s) 72, 110, 474
DpnI GATC 4 cut(s) 26, 126, 366, 522
DpnII GATC 4 cut(s) 24, 124, 364, 520
EciI GGCGGA 1 cut(s) 621
Ecl136II GAGCTC 2 cut(s) 82, 545
Eco24I GRGCYC 2 cut(s) 84, 547
Eco47I GGWCC 1 cut(s) 568
Eco53kI GAGCTC 2 cut(s) 82, 545
Eco88I CYCGRG 1 cut(s) 538
EcoICRI GAGCTC 2 cut(s) 82, 545
EcoT38I GRGCYC 2 cut(s) 84, 547
Esp3I CGTCTC 1 cut(s) 384
FaiI YATR 7 cut(s) 96, 228, 243, 305, 534, 675, 691
FaqI GGGAC 2 cut(s) 356, 665
Fnu4HI GCNGC 2 cut(s) 396, 399
FokI GGATG 2 cut(s) 105, 523
FriOI GRGCYC 2 cut(s) 84, 547
Fsp4HI GCNGC 2 cut(s) 396, 399
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 396, 399
HgaI GACGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 4 cut(s) 34, 206, 310, 678
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 3 cut(s) 113, 205, 530
Hpy188III TCNNGA 4 cut(s) 122, 286, 586, 650
Hpy8I GTNNAC 1 cut(s) 568
Hpy99I CGWCG 2 cut(s) 661, 664
HpyAV CCTTC 2 cut(s) 55, 562
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 656
HpyCH4V TGCA 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 72, 110, 474
HpySE526I ACGT 1 cut(s) 656
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 24, 124, 364, 520
LmnI GCTCC 3 cut(s) 79, 87, 428
LpnPI CCDG 9 cut(s) 22, 35, 135, 158, 236, 324, 433, 604, 630
Lsp1109I GCAGC 2 cut(s) 382, 410
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 1 cut(s) 647
MalI GATC 4 cut(s) 26, 126, 366, 522
MboI GATC 4 cut(s) 24, 124, 364, 520
MboII GAAGA 7 cut(s) 34, 70, 164, 175, 477, 621, 624
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 84, 547
MluCI AATT 3 cut(s) 167, 433, 469
MlyI GAGTC 2 cut(s) 200, 687
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 1 cut(s) 210
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 478
Mva1269I GAATGC 1 cut(s) 401
NdeII GATC 4 cut(s) 24, 124, 364, 520
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 647
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 34, 310
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 2 cut(s) 397, 400
PleI GAGTC 2 cut(s) 200, 686
PpsI GAGTC 2 cut(s) 200, 686
PsiI TTATAA 2 cut(s) 96, 243
Psp124BI GAGCTC 2 cut(s) 84, 547
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 568
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SacI GAGCTC 2 cut(s) 84, 547
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 396, 399
Sau3AI GATC 4 cut(s) 24, 124, 364, 520
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 2 cut(s) 200, 687
SduI GDGCHC 2 cut(s) 84, 547
SetI ASST 6 cut(s) 84, 105, 221, 547, 659, 689
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 568
Sse9I AATT 3 cut(s) 167, 433, 469
SsiI CCGC 2 cut(s) 478, 606
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 2 cut(s) 84, 547
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 659
TaqI TCGA 2 cut(s) 462, 503
TasI AATT 3 cut(s) 167, 433, 469
TfiI GAWTC 2 cut(s) 34, 310
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 395, 398
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 3 cut(s) 323, 432, 527
TspGWI ACGGA 3 cut(s) 74, 92, 285
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 3 cut(s) 167, 433, 469
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.