Rw2G037000

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010346
Physical Location & Seq
Reverse (-)
60916427 .. 60919107
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037000.1

Sequence Viewer

Length: 723 bp
ATGGCTAATAGGGAAGAGAAAGGCAATGACTTTTATGATGTTTTGGGGTTGAAGAAGGAATGCTCGGATTCGGAGCTCAGGAATGCCTATAAGAAACTTGCACTGAGATGGCACCCAGATCGTTGCTCGGCCACAGGAAATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAGTTTCAGGACATTCAACAAGCCTATTCTGTTCTGTCTGACGCGAACAAGAGATTTATGTACGATGTAGGAGCTTATGAAGGTGATGATGACGAAAATGGAATGGGTGATTTTTTGAACGAGATGGCGGTGATGATGAGCCAGACTAAGCCAAATGAAAATGGAGGGGAGAGCTTTGAACAATTGCAGGAACTCTTTGAAGAAATGTTTCAGGGGGATATTGAGAGTTTCAGCTCCTGCTCTCAGCCTCCTGCTTCCTGTTCTACTTCTTCATCTTCATACGCATCCTACTGTGAAAGTTCTACACCCAATAACAAACGTAATTCCTCTGAAATGAATTATGGCAACGCAACCTTGGACAGTTCTGGTTTTGACACTCATTTTCACAGTTTTTGTGTAGGGGCGGAAAGCCAGCAAGGGATCGGGAAAGGGATGTCGGGAAGAGAAGGGATTCCAGGAGGAGTAACCGGTAGGCGAAGGGAGGGCAGGAAACAAAAGGTTACATCTGGGCACGATGTCTCATCTAATGATCACTCGGGTATATCTGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

240

Amino Acids

26.45

Weight (kDa)

5.06

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 78 1.6e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccII CGCG 1 cut(s) 212
AciI CCGC 2 cut(s) 296, 572
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 6 cut(s) 52, 144, 185, 286, 347, 368
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 4 cut(s) 76, 242, 342, 402
AluI AGCT 4 cut(s) 76, 242, 342, 402
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 1 cut(s) 596
AlwNI CAGNNNCTG 1 cut(s) 405
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 139
AsiGI ACCGGT 1 cut(s) 635
Asp700I GAANNNNTTC 2 cut(s) 375, 618
AsuHPI GGTGA 3 cut(s) 263, 287, 310
AvaI CYCGRG 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 681
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 2 cut(s) 102, 286
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 624
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 1 cut(s) 717
Bme1390I CCNGG 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 703
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 635
Bse118I RCCGGY 1 cut(s) 635
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 2 cut(s) 452, 606
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 3 cut(s) 91, 95, 425
BseRI GAGGAG 1 cut(s) 642
BseSI GKGCMC 1 cut(s) 681
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 635
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 1 cut(s) 636
BsmAI GTCTC 1 cut(s) 691
BsmI GAATGC 2 cut(s) 65, 88
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 703
Bsp1286I GDGCHC 2 cut(s) 78, 681
Bsp143I GATC 3 cut(s) 118, 588, 697
BspACI CCGC 2 cut(s) 296, 572
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 3 cut(s) 90, 96, 424
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 635
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 3 cut(s) 118, 588, 697
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 461, 530, 557
Bst6I CTCTTC 2 cut(s) 9, 604
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 4 cut(s) 77, 104, 315, 411
BstF5I GGATG 2 cut(s) 452, 606
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 3 cut(s) 121, 591, 700
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 3 cut(s) 118, 588, 697
BstNI CCWGG 1 cut(s) 624
BstSCI CCNGG 1 cut(s) 622
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 1 cut(s) 212
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 452, 606
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 581
CaiI CAGNNNCTG 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 635
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 229
CspAI ACCGGT 1 cut(s) 635
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 4 cut(s) 77, 104, 315, 411
DpnI GATC 3 cut(s) 120, 590, 699
DpnII GATC 3 cut(s) 118, 588, 697
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 9, 604
EarI CTCTTC 2 cut(s) 9, 604
EciI GGCGGA 1 cut(s) 587
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 522
FaiI YATR 7 cut(s) 36, 90, 227, 246, 448, 510, 710
FbaI TGATCA 1 cut(s) 697
FokI GGATG 2 cut(s) 439, 613
FriOI GRGCYC 1 cut(s) 78
FspBI CTAG 1 cut(s) 717
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 636
HgaI GACGC 1 cut(s) 218
HinfI GANTC 2 cut(s) 68, 619
HpaII CCGG 1 cut(s) 636
HphI GGTGA 3 cut(s) 263, 287, 310
Hpy188I TCNGA 4 cut(s) 67, 73, 208, 499
Hpy188III TCNNGA 4 cut(s) 79, 176, 592, 606
HpyAV CCTTC 4 cut(s) 49, 242, 608, 639
HpyCH4III ACNGT 3 cut(s) 461, 530, 557
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 2 cut(s) 101, 355
HpyF3I CTNAG 4 cut(s) 77, 104, 315, 411
HpySE526I ACGT 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 3 cut(s) 118, 588, 697
LmnI GCTCC 3 cut(s) 73, 239, 407
LweI GCATC 1 cut(s) 461
MaeI CTAG 1 cut(s) 717
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 631, 667
MalI GATC 3 cut(s) 120, 590, 699
MboI GATC 3 cut(s) 118, 588, 697
MboII GAAGA 8 cut(s) 26, 64, 167, 178, 380, 429, 435, 621
MfeI CAATTG 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 78, 681
MluCI AATT 4 cut(s) 139, 350, 490, 505
MnlI CCTC 5 cut(s) 326, 426, 505, 620, 643
MroXI GAANNNNTTC 2 cut(s) 375, 618
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 1 cut(s) 624
MunI CAATTG 1 cut(s) 350
Mva1269I GAATGC 2 cut(s) 65, 88
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 212
NdeII GATC 3 cut(s) 118, 588, 697
NlaIV GGNNCC 1 cut(s) 113
NmeAIII GCCGAG 1 cut(s) 107
PctI GAATGC 2 cut(s) 65, 88
PdmI GAANNNNTTC 2 cut(s) 375, 618
PfeI GAWTC 2 cut(s) 68, 619
PfoI TCCNGGA 1 cut(s) 622
PinAI ACCGGT 1 cut(s) 635
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 405
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 106
SacI GAGCTC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 118, 588, 697
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 2 cut(s) 78, 681
SetI ASST 8 cut(s) 78, 244, 253, 344, 404, 490, 524, 669
SfaNI GCATC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 4 cut(s) 139, 350, 490, 505
SsiI CCGC 2 cut(s) 296, 572
SspMI CTAG 1 cut(s) 717
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 3 cut(s) 461, 530, 557
TaiI ACGT 1 cut(s) 490
TasI AATT 4 cut(s) 139, 350, 490, 505
TfiI GAWTC 2 cut(s) 68, 619
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 5 cut(s) 261, 339, 429, 435, 518
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 139
XmnI GAANNNNTTC 2 cut(s) 375, 618
XspI CTAG 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.