RchiOBHm_Chr2g0146791

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010346
Physical Location & Seq
Reverse (-)
64442433 .. 64445916
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51649

Sequence Viewer

Length: 645 bp
ATGCCTATAAGAAACTTGCGCTGGTTAGAATGGCACCCAGATCGTTGCTCGGCCACAGGAAATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAGTTTCAGGACATTCAACAAGCCTATTCTGTTCTGTCTGACGCGAACAAGAGATTTATGTACGATGTAGGAGCTTATGAAGGTGATGATGACGAAAATGGAATGGGTGATTTTTTGAACGAGATGGCGGTGATGATGAGCCAGACTAAGCCGAATGAAAATGGAGGGGAGAGCTTTGAACAATTGCAGGAACTCTTTGAAGAAATGTTTCAGGGGGATATTGAGAGTTTCAGCTCCTGCTCTCAGCCTCCTGCTTCCTGTTCTACTTCTTCATCTTCATACGTATCCTACTGTGAAAGTTCTACACCCAATAACAAACGTAATTCCTCTGAAATGAATTATGGCAACGCAACCTTGGACAGTTCTGGTTTTGACACTCATTTTCACAGTTTTTGTGTAGGGGCGGAAAGCCAGCAAGGGATCGGGAAAGGGATGTCGGGAAGAGAAGGGATTCCAGGAGGAGTAACCAGTAGGCGAAGGGAGGGCAGGAAACAAAAGGTTACATCTGGGCACGATGTCTCATCTAATGATCACTCGGGTATATCTGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

214

Amino Acids

23.63

Weight (kDa)

4.98

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 52 2.5e-09 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 218, 494
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 5 cut(s) 66, 107, 208, 269, 290
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 3 cut(s) 164, 264, 324
AluI AGCT 3 cut(s) 164, 264, 324
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 327
Ama87I CYCGRG 1 cut(s) 625
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 61
Asp700I GAANNNNTTC 2 cut(s) 297, 540
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 185, 209, 232
AvaI CYCGRG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 603
BanI GGYRCC 1 cut(s) 33
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 1 cut(s) 639
BfuI GTATCC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 625
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 558
BseRI GAGGAG 1 cut(s) 564
BseSI GKGCMC 1 cut(s) 603
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 625
BsmAI GTCTC 1 cut(s) 613
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 3 cut(s) 40, 510, 619
BspACI CCGC 2 cut(s) 218, 494
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 40, 510, 619
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 3 cut(s) 383, 452, 479
Bst6I CTCTTC 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 2 cut(s) 237, 333
BstF5I GGATG 1 cut(s) 528
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 43, 513, 622
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 3 cut(s) 40, 510, 619
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 1 cut(s) 544
BstSLI GKGCMC 1 cut(s) 603
BstSNI TACGTA 1 cut(s) 373
BstUI CGCG 1 cut(s) 134
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 528
Cac8I GCNNGC 1 cut(s) 503
CaiI CAGNNNCTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 21
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 237, 333
DpnI GATC 3 cut(s) 42, 512, 621
DpnII GATC 3 cut(s) 40, 510, 619
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
EciI GGCGGA 1 cut(s) 509
Eco105I TACGTA 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaiI YATR 6 cut(s) 8, 149, 168, 370, 432, 632
FbaI TGATCA 1 cut(s) 619
FokI GGATG 1 cut(s) 535
FspBI CTAG 1 cut(s) 639
GlaI GCGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 53
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 1 cut(s) 541
HphI GGTGA 3 cut(s) 185, 209, 232
Hpy188I TCNGA 2 cut(s) 130, 421
Hpy188III TCNNGA 3 cut(s) 98, 514, 528
HpyAV CCTTC 3 cut(s) 164, 530, 561
HpyCH4III ACNGT 3 cut(s) 383, 452, 479
HpyCH4IV ACGT 2 cut(s) 372, 409
HpyCH4V TGCA 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 237, 333
HpySE526I ACGT 2 cut(s) 372, 409
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 3 cut(s) 40, 510, 619
LmnI GCTCC 2 cut(s) 161, 329
MaeI CTAG 1 cut(s) 639
MaeII ACGT 2 cut(s) 372, 409
MaeIII GTNAC 2 cut(s) 553, 589
MalI GATC 3 cut(s) 42, 512, 621
MboI GATC 3 cut(s) 40, 510, 619
MboII GAAGA 6 cut(s) 89, 100, 302, 351, 357, 543
MfeI CAATTG 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 4 cut(s) 61, 272, 412, 427
MnlI CCTC 5 cut(s) 248, 348, 427, 542, 565
MroXI GAANNNNTTC 2 cut(s) 297, 540
MspR9I CCNGG 1 cut(s) 546
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 134
NdeII GATC 3 cut(s) 40, 510, 619
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 29
PdmI GAANNNNTTC 2 cut(s) 297, 540
PfeI GAWTC 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 40, 510, 619
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 1 cut(s) 603
SetI ASST 8 cut(s) 166, 175, 266, 326, 375, 412, 446, 591
SnaBI TACGTA 1 cut(s) 373
Sse9I AATT 4 cut(s) 61, 272, 412, 427
SsiI CCGC 2 cut(s) 218, 494
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 544
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 3 cut(s) 383, 452, 479
TaiI ACGT 2 cut(s) 375, 412
TasI AATT 4 cut(s) 61, 272, 412, 427
TfiI GAWTC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 183, 261, 351, 357, 440
XapI RAATTY 1 cut(s) 61
XmnI GAANNNNTTC 2 cut(s) 297, 540
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.