Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010346

Physical Location & Seq

Genomic Coordinates Forward (+)

50751641 .. 50752213

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGAAACACATGTAATTGGGGCTCATCAAGAATCAAAGACAAAAGGAAGCATAGAGATCTGACTGAGGGCGAGAAGAGGAGGCGCGTGGCAAAGGAGGAGTCGTCGATCCATGCTGATTCGGTGGATTTGGAGGAAGAGTGGCCAATCTGGTCGCCTAGGGCAGTGGAGGGGTTGGTGTGGCCAATCGGTGATGCGGTGAGCTACGTGGCTGAGAAGTGGTCGATCCGGTCGCCAATGAACGCCAGAGCGGCGGAGGAGTGCTTGTCGCTGATGAAAGCCGCGTCGAAGAAGGAGAGCTGGAGATCGCCGATCCAGTCGCTGGAGGGGTTGGTGAGGACAATTGACGACGCAGAGGAAGCGAGCGACCCTCGGAGTCCCGATGCCTATCTGGCCTACTGTCGGAAGGAAGCAGATCGATGTCGGAGTTCTTGCAAATTGCGGGAAGTTTCATTTTGCGTTCACTCGAGAGCTTTTTTTTCTTTCTACTCTGATTTTGGGATTAGGGATTTGGGGGGTGTAGGATTTGGAGATTTTATAGGAACGGTTAGGCGCACATATCTAATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0051087

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

190

Amino Acids

21.65

Weight (kDa)

8.2

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14200
fragaria_vesca	FvH4_6g35350 FvH4_6g35350
malus_domestica	MD09G1176500.v1.1 MD17G1150300.v1.1
prunus_persica	Prupe.3G035500_v2.0.a1
pyrus_communis	pycom09g09470 pycom17g14360
rosa_chinensis	RchiOBHm_Chr2g0146791
rosa_laevigata	RLG00000020222
rosa_multiflora	Rmu_co8420887.1_g000001 Rmu_sc0015268.1_g000006 Rmu_sc0017620.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099910
rosa_rugosa	Rorug02G0397000 Rorug02G0397100
rosa_samantha	Rh2AG453300 Rh2BG466100 Rh2CG440400 Rh2DG475100
rosa_wichuraiana	Rw2G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	2 cut(s)	87, 284
AciI	CCGC	5 cut(s)	197, 251, 254, 282, 442
AclWI	GGATC	3 cut(s)	103, 220, 307
AcoI	YGGCCR	2 cut(s)	143, 182
AfiI	CCNNNNNNNGG	2 cut(s)	322, 402
AflIII	ACRYGT	1 cut(s)	11
AluBI	AGCT	3 cut(s)	204, 300, 473
AluI	AGCT	3 cut(s)	204, 300, 473
AlwI	GGATC	3 cut(s)	103, 220, 307
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	3 cut(s)	143, 182, 393
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspA2I	CCTAGG	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	87, 555
AsuHPI	GGTGA	3 cut(s)	203, 211, 346
AvaI	CYCGRG	1 cut(s)	466
AvrII	CCTAGG	1 cut(s)	158
BalI	TGGCCA	2 cut(s)	145, 184
BanII	GRGCYC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	2 cut(s)	251, 392
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	252, 282
BlnI	CCTAGG	1 cut(s)	158
BlsI	GCNGC	2 cut(s)	253, 283
BmeT110I	CYCGRG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	184, 373
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	2 cut(s)	322, 344
Bsa29I	ATCGAT	1 cut(s)	418
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	158, 371
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 125, 155, 251, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 402
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	158, 371
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	322, 402
BseMII	CTCAG	2 cut(s)	57, 204
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	3 cut(s)	94, 113, 272
Bsh1236I	CGCG	2 cut(s)	87, 284
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	145, 184, 395
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	322, 402
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	145, 184, 395
BsoBI	CYCGRG	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
BspACI	CCGC	5 cut(s)	197, 251, 254, 282, 442
BspANI	GGCC	3 cut(s)	145, 184, 395
BspCNI	CTCAG	2 cut(s)	58, 205
BspDI	ATCGAT	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	87, 284
BspPI	GGATC	3 cut(s)	103, 220, 307
BsrBI	CCGCTC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	158, 371
BssMI	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	401, 547
Bst6I	CTCTTC	2 cut(s)	71, 132
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	66, 213
BstFNI	CGCG	2 cut(s)	87, 284
BstHHI	GCGC	2 cut(s)	87, 555
BstKTI	GATC	6 cut(s)	61, 111, 228, 308, 315, 418
BstMBI	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 359, 392
BstNSI	RCATGY	1 cut(s)	15
BstUI	CGCG	2 cut(s)	87, 284
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	145, 184, 395
BsuTUI	ATCGAT	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	2 cut(s)	87, 555
ClaI	ATCGAT	1 cut(s)	418
CseI	GACGC	2 cut(s)	273, 359
CviAII	CATG	2 cut(s)	12, 113
CviJI	RGCY	9 cut(s)	24, 145, 184, 204, 212, 281, 300, 395, 473
CviKI_1	RGCY	9 cut(s)	24, 145, 184, 204, 212, 281, 300, 395, 473
DdeI	CTNAG	2 cut(s)	66, 213
DpnI	GATC	6 cut(s)	60, 110, 227, 307, 314, 417
DpnII	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
EaeI	YGGCCR	2 cut(s)	143, 182
Eam1104I	CTCTTC	2 cut(s)	71, 132
EarI	CTCTTC	2 cut(s)	71, 132
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	15, 116
FaiI	YATR	5 cut(s)	13, 54, 114, 539, 559
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	2 cut(s)	11, 112
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	252, 282
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	252, 282
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	2 cut(s)	86, 554
GluI	GCNGC	2 cut(s)	252, 282
GsuI	CTGGAG	2 cut(s)	322, 344
HaeIII	GGCC	3 cut(s)	145, 184, 395
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	2 cut(s)	273, 359
HhaI	GCGC	2 cut(s)	87, 555
Hin1II	CATG	2 cut(s)	15, 116
Hin6I	GCGC	2 cut(s)	85, 553
HinP1I	GCGC	2 cut(s)	85, 553
HinfI	GANTC	4 cut(s)	33, 101, 119, 376
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	3 cut(s)	203, 211, 346
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	6 cut(s)	63, 375, 405, 426, 493, 569
Hpy188III	TCNNGA	3 cut(s)	30, 380, 468
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	3 cut(s)	109, 289, 353
HpyAV	CCTTC	2 cut(s)	286, 400
HpyCH4III	ACNGT	2 cut(s)	401, 547
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 359, 392
HpyF3I	CTNAG	2 cut(s)	66, 213
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	15, 116
HspAI	GCGC	2 cut(s)	85, 553
Kzo9I	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
LpnPI	CCDG	7 cut(s)	136, 242, 259, 286, 308, 329, 377
LweI	GCATC	2 cut(s)	184, 373
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	207
MalI	GATC	6 cut(s)	60, 110, 227, 307, 314, 417
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
MboII	GAAGA	3 cut(s)	88, 149, 301
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	2 cut(s)	145, 184
MluCI	AATT	3 cut(s)	16, 342, 437
MluNI	TGGCCA	2 cut(s)	145, 184
MlyI	GAGTC	2 cut(s)	110, 385
MmeI	TCCRAC	2 cut(s)	383, 404
Mox20I	TGGCCA	2 cut(s)	145, 184
MscI	TGGCCA	2 cut(s)	145, 184
Msp20I	TGGCCA	2 cut(s)	145, 184
MspI	CCGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	342
MvnI	CGCG	2 cut(s)	87, 284
MwoI	GCNNNNNNNGC	3 cut(s)	251, 359, 392
NdeII	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
NlaIII	CATG	2 cut(s)	15, 116
NspI	RCATGY	1 cut(s)	15
PaeR7I	CTCGAG	1 cut(s)	466
PciI	ACATGT	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	33, 119
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	253, 283
PleI	GAGTC	2 cut(s)	109, 384
PpsI	GAGTC	2 cut(s)	109, 384
Ppu21I	YACGTR	1 cut(s)	208
PscI	ACATGT	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	58
SatI	GCNGC	2 cut(s)	252, 282
Sau3AI	GATC	6 cut(s)	58, 108, 225, 305, 312, 415
SchI	GAGTC	2 cut(s)	110, 385
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	4 cut(s)	206, 210, 302, 475
SfaNI	GCATC	2 cut(s)	184, 373
Sfr274I	CTCGAG	1 cut(s)	466
SlaI	CTCGAG	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	3 cut(s)	16, 342, 437
SsiI	CCGC	5 cut(s)	197, 251, 254, 282, 442
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	401, 547
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	5 cut(s)	107, 224, 287, 418, 467
TasI	AATT	3 cut(s)	16, 342, 437
TauI	GCSGC	2 cut(s)	254, 284
TfiI	GAWTC	2 cut(s)	33, 119
TscAI	CASTG	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	254, 290, 441
TspRI	CASTG	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	322
XceI	RCATGY	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	466
XmaJI	CCTAGG	1 cut(s)	158
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.