Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010346

Physical Location & Seq

Genomic Coordinates Reverse (-)

11882497 .. 11886259

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTGATGGGGAAGAGAAAGGCAGTGACTTCTATGCAGTTTTAGGGTTGGACAAGGAATGCACAGACTCGGAGCTCAGAAATGCCTATAAGAAACTTGCACTGAGATGGCACCCGGATCGCTGTTCTGCCTCCGGAAATTCTAAGTTCGTGGAAGAAGCCAAAATGAAGTTCCAAGACATTCAACAAGCCTATTCTGTTTTATCTGACGCGAATAAGAGGTTTCTTTACGATGTAGGAGCCTATGGCAGTGATGATGACGAAAACAATGGGATGGGTGAGTTTTTGAACGAAATGGCAATGATGATGACCCAAACGAAGCCTAATGAAGATGGGAAGGAGACGTTTGAAGAATTGCAGGATCTTTTTGATGAAATGTTTCAAGGGGATATTGGGAGTTATGGGTCTGCTTCTCGGACCCCTAGTTCCTGTTCTACTTCTTCGTATGCGTCCTATTGTGAAAGCTCAAGTTCCAATAACAAGCGTAATTGCTCTGAAATGAACTATGAGAAGGTGACCTTGGATGATCCTTCTGTCTTCGACAATCATTTTCCGAGTTTTTGTGTAGGGACAGGTGGGAAGCCGTCAAGACAACGGGAAGGCAACAGCAGCAAGAGAAGGGATTCGCGCAGAAACCACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0051087

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

215

Amino Acids

24.09

Weight (kDa)

4.89

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14200
fragaria_vesca	FvH4_6g35350 FvH4_6g35350
malus_domestica	MD09G1176500.v1.1 MD17G1150300.v1.1
prunus_persica	Prupe.3G035500_v2.0.a1
pyrus_communis	pycom09g09470 pycom17g14360
rosa_chinensis	RchiOBHm_Chr2g0146791
rosa_laevigata	RLG00000020222
rosa_multiflora	Rmu_co8420887.1_g000001 Rmu_sc0015268.1_g000006 Rmu_sc0017620.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099910
rosa_rugosa	Rorug02G0397000 Rorug02G0397100
rosa_samantha	Rh2AG453300 Rh2BG466100 Rh2CG440400 Rh2DG475100
rosa_wichuraiana	Rw2G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	2 cut(s)	212, 628
AccIII	TCCGGA	1 cut(s)	134
AclWI	GGATC	3 cut(s)	126, 369, 521
AcsI	RAATTY	1 cut(s)	139
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	185, 289, 350, 383
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 503, 535
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	2 cut(s)	76, 465
AluI	AGCT	2 cut(s)	76, 465
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	3 cut(s)	126, 369, 521
Aor13HI	TCCGGA	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	1 cut(s)	139
AsiGI	ACCGGT	1 cut(s)	639
Asp700I	GAANNNNTTC	2 cut(s)	378, 622
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	290, 526
AvaII	GGWCC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	4 cut(s)	2, 102, 268, 326
BceAI	ACGGC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	610
BlsI	GCNGC	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	3 cut(s)	113, 241, 419
BmrFI	CCNGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	2 cut(s)	134, 639
Bse118I	RCCGGY	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	2 cut(s)	279, 529
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	91, 95
BseXI	GCAGC	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	212, 628
BshNI	GGYRCC	1 cut(s)	111
BshTI	ACCGGT	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	116, 135, 640
BslFI	GGGAC	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	118, 361, 526
BspCNI	CTCAG	2 cut(s)	90, 96
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	2 cut(s)	212, 628
BspLI	GGNNCC	3 cut(s)	113, 241, 419
BspPI	GGATC	3 cut(s)	126, 369, 521
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	639
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	3 cut(s)	118, 361, 526
BssT1I	CCWWGG	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	77, 104, 144
BstEII	GGTNACC	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	279, 529
BstFNI	CGCG	2 cut(s)	212, 628
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	3 cut(s)	121, 364, 529
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	3 cut(s)	118, 361, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	2 cut(s)	212, 628
BstV1I	GCAGC	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	279, 529
BtsI	GCAGTG	2 cut(s)	31, 256
BtsIMutI	CAGTG	3 cut(s)	31, 101, 256
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	2 cut(s)	218, 438
CspAI	ACCGGT	1 cut(s)	639
CviJI	RGCY	8 cut(s)	5, 76, 161, 191, 242, 322, 465, 583
CviKI_1	RGCY	8 cut(s)	5, 76, 161, 191, 242, 322, 465, 583
DdeI	CTNAG	3 cut(s)	77, 104, 144
DpnI	GATC	3 cut(s)	120, 363, 528
DpnII	GATC	3 cut(s)	118, 361, 526
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	335
FaiI	YATR	6 cut(s)	36, 90, 246, 402, 447, 507
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	583
Fnu4HI	GCNGC	1 cut(s)	610
FokI	GGATG	2 cut(s)	286, 536
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	610
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	1 cut(s)	610
HapII	CCGG	3 cut(s)	116, 135, 640
HgaI	GACGC	2 cut(s)	218, 438
HhaI	GCGC	1 cut(s)	630
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	68, 623
HpaII	CCGG	3 cut(s)	116, 135, 640
HphI	GGTGA	2 cut(s)	290, 526
Hpy188I	TCNGA	6 cut(s)	73, 80, 208, 417, 496, 555
Hpy188III	TCNNGA	2 cut(s)	135, 588
HpyAV	CCTTC	5 cut(s)	331, 505, 540, 593, 612
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	4 cut(s)	38, 63, 101, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	3 cut(s)	77, 104, 144
HpySE526I	ACGT	1 cut(s)	344
HspAI	GCGC	1 cut(s)	628
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	118, 361, 526
LmnI	GCTCC	2 cut(s)	73, 239
LpnPI	CCDG	5 cut(s)	129, 148, 344, 442, 558
Lsp1109I	GCAGC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	26, 514
MalI	GATC	3 cut(s)	120, 363, 528
MboI	GATC	3 cut(s)	118, 361, 526
MboII	GAAGA	6 cut(s)	26, 167, 341, 362, 432, 529
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	3 cut(s)	139, 353, 487
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	142, 213
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	2 cut(s)	378, 622
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	3 cut(s)	116, 135, 640
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	2 cut(s)	212, 628
MwoI	GCNNNNNNNGC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	118, 361, 526
NlaIV	GGNNCC	3 cut(s)	113, 241, 419
NmuCI	GTSAC	2 cut(s)	26, 514
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	378, 622
PfeI	GAWTC	1 cut(s)	623
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	611
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	113, 241, 419
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	610
Sau3AI	GATC	3 cut(s)	118, 361, 526
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	78, 224, 347, 467, 516, 521, 577
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	3 cut(s)	139, 353, 487
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	519
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	540
TasI	AATT	3 cut(s)	139, 353, 487
TfiI	GAWTC	1 cut(s)	623
TscAI	CASTG	3 cut(s)	31, 108, 256
TseFI	GTSAC	2 cut(s)	26, 514
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	2 cut(s)	26, 514
TspDTI	ATGAA	4 cut(s)	182, 342, 387, 515
TspRI	CASTG	3 cut(s)	31, 108, 256
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	1 cut(s)	139
XmnI	GAANNNNTTC	2 cut(s)	378, 622
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.