Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010346

Physical Location & Seq

Genomic Coordinates Forward (+)

7643465 .. 7647706

Gene Structure 4242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGATGGGGAAGAGAAAGGCAGTGACTTCTATGCAGTTTTGGGGTTGGAAAAGGAATGCACAGACTCGGAGCTCAGAAATGCCTATAAGAAACTTGCACTGAGATGGCACCCGGATCGGTGTTCGGCCTCCGGAAATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAATTCCAGGACATCCAAGAAGCCTATTCTGTTTTATCTGACGCGAATAAGAGGTTTCTGTACGATGTTGGGGCCTATGGCAGTGATGATGACGAAAACATTGGGATGGGTGAGTTTTTGGACGAGATGGCAGTGATGATGCGCCAAACGAAGCCTAATGAGACCTTTGAAGAATTGAAAAATCTTTTTGATGAAATGTTTGAAGGGGATACTGGGAGTTATGGGTCAGTCTCTCACCCTCCTAGTTCCTGTTCTACGTCTTCGTATGTGTCCTATTGTGAAAGATCAAGTTCCAGTACTAAGCGGAATTGCTCCGAAATGAACTATGAGAAGGCGACCTTGGACGATCCTTCTGGCTTCGACACTCATTTTCAGAGCTTTTGTTTAGGGGTGGAAAGCCTTCAAGACATCGGGGAGGGGACGGCAGCAAGAGAAGTGATTCGCGCAGAAGCCATCGGTAATCGAAGGCAGGGCAGGAAACAAAAGGTTACATCTGGTAATGATGTTTCTTCAAACGACTACTCTGGTATATCAGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0051087

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

237

Amino Acids

26.24

Weight (kDa)

4.74

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14200
fragaria_vesca	FvH4_6g35350 FvH4_6g35350
malus_domestica	MD09G1176500.v1.1 MD17G1150300.v1.1
prunus_persica	Prupe.3G035500_v2.0.a1
pyrus_communis	pycom09g09470 pycom17g14360
rosa_chinensis	RchiOBHm_Chr2g0146791
rosa_laevigata	RLG00000020222
rosa_multiflora	Rmu_co8420887.1_g000001 Rmu_sc0015268.1_g000006 Rmu_sc0017620.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099910
rosa_rugosa	Rorug02G0397000 Rorug02G0397100
rosa_samantha	Rh2AG453300 Rh2BG466100 Rh2CG440400 Rh2DG475100
rosa_wichuraiana	Rw2G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	2 cut(s)	212, 612
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	2 cut(s)	5, 472
AclWI	GGATC	2 cut(s)	126, 509
AcsI	RAATTY	2 cut(s)	139, 170
AfaI	GTAC	2 cut(s)	230, 466
AgsI	TTSAA	6 cut(s)	144, 338, 346, 371, 572, 681
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 491, 523
AluBI	AGCT	3 cut(s)	76, 546, 704
AluI	AGCT	3 cut(s)	76, 546, 704
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	323, 403
AlwI	GGATC	2 cut(s)	126, 509
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	2 cut(s)	129, 240
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	139, 170
Asp700I	GAANNNNTTC	3 cut(s)	170, 567, 606
AspLEI	GCGC	2 cut(s)	312, 614
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	290, 395
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	5 cut(s)	2, 102, 268, 289, 629
BceAI	ACGGC	1 cut(s)	606
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	323, 403
BfaI	CTAG	2 cut(s)	411, 705
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
BmcAI	AGTACT	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	116, 176
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	2 cut(s)	113, 241
BmrFI	CCNGG	2 cut(s)	116, 176
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	385, 462
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	3 cut(s)	13, 180, 279
BseMII	CTCAG	2 cut(s)	91, 95
BseNI	ACTGG	2 cut(s)	385, 462
BseXI	GCAGC	1 cut(s)	605
Bsh1236I	CGCG	2 cut(s)	212, 612
BshFI	GGCC	2 cut(s)	131, 242
BshNI	GGYRCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	116, 135
BslFI	GGGAC	1 cut(s)	601
BsmAI	GTCTC	2 cut(s)	323, 403
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	131, 242
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	118, 452, 514
BspACI	CCGC	2 cut(s)	5, 472
BspANI	GGCC	2 cut(s)	131, 242
BspCNI	CTCAG	2 cut(s)	90, 96
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	2 cut(s)	212, 612
BspLI	GGNNCC	2 cut(s)	113, 241
BspPI	GGATC	2 cut(s)	126, 509
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	385, 462
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	3 cut(s)	118, 452, 514
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	77, 104, 468
BstF5I	GGATG	3 cut(s)	13, 180, 279
BstFNI	CGCG	2 cut(s)	212, 612
BstHHI	GCGC	2 cut(s)	312, 614
BstKTI	GATC	3 cut(s)	121, 455, 517
BstMAI	GTCTC	2 cut(s)	323, 403
BstMBI	GATC	3 cut(s)	118, 452, 514
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	114, 174
BstUI	CGCG	2 cut(s)	212, 612
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	131, 242
BtsCI	GGATG	3 cut(s)	13, 180, 279
BtsI	GCAGTG	3 cut(s)	31, 256, 306
BtsIMutI	CAGTG	4 cut(s)	31, 101, 256, 306
CfoI	GCGC	2 cut(s)	312, 614
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	229, 465
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviQI	GTAC	2 cut(s)	229, 465
DdeI	CTNAG	3 cut(s)	77, 104, 468
DpnI	GATC	3 cut(s)	120, 454, 516
DpnII	GATC	3 cut(s)	118, 452, 514
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	507
FaiI	YATR	7 cut(s)	36, 90, 246, 390, 435, 495, 698
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	601
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	3 cut(s)	20, 167, 286
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	2 cut(s)	411, 705
GlaI	GCGC	2 cut(s)	311, 613
GluI	GCNGC	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	131, 242
HapII	CCGG	2 cut(s)	116, 135
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	2 cut(s)	312, 614
Hin6I	GCGC	2 cut(s)	310, 612
HinP1I	GCGC	2 cut(s)	310, 612
HinfI	GANTC	2 cut(s)	68, 607
HpaII	CCGG	2 cut(s)	116, 135
HphI	GGTGA	2 cut(s)	290, 395
Hpy188I	TCNGA	5 cut(s)	73, 80, 208, 484, 543
Hpy188III	TCNNGA	2 cut(s)	135, 572
HpyAV	CCTTC	5 cut(s)	365, 493, 528, 578, 627
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	38, 63, 101
HpyF3I	CTNAG	3 cut(s)	77, 104, 468
HpySE526I	ACGT	1 cut(s)	425
HspAI	GCGC	2 cut(s)	310, 612
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	118, 452, 514
LmnI	GCTCC	2 cut(s)	73, 485
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	2 cut(s)	411, 705
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	26, 655
MalI	GATC	3 cut(s)	120, 454, 516
MboI	GATC	3 cut(s)	118, 452, 514
MboII	GAAGA	6 cut(s)	26, 167, 178, 350, 420, 669
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	4 cut(s)	139, 170, 341, 475
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	4 cut(s)	142, 213, 417, 577
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	3 cut(s)	170, 567, 606
MslI	CAYNNNNRTG	2 cut(s)	106, 272
MspI	CCGG	2 cut(s)	116, 135
MspR9I	CCNGG	2 cut(s)	116, 176
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	2 cut(s)	212, 612
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	118, 452, 514
NlaIV	GGNNCC	2 cut(s)	113, 241
NmuCI	GTSAC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	3 cut(s)	170, 567, 606
PfeI	GAWTC	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	113, 241
PspPI	GGNCC	1 cut(s)	240
RsaI	GTAC	2 cut(s)	230, 466
RsaNI	GTAC	2 cut(s)	229, 465
RseI	CAYNNNNRTG	2 cut(s)	106, 272
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	118, 452, 514
Sau96I	GGNCC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	466
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	116, 176
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	78, 224, 335, 428, 509, 548, 657, 706
SfaNI	GCATC	1 cut(s)	297
SmiMI	CAYNNNNRTG	2 cut(s)	106, 272
Sse9I	AATT	4 cut(s)	139, 170, 341, 475
SsiI	CCGC	2 cut(s)	5, 472
SspMI	CTAG	2 cut(s)	411, 705
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	114, 174
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	528, 631
TasI	AATT	4 cut(s)	139, 170, 341, 475
TatI	WGTACW	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	607
TscAI	CASTG	4 cut(s)	31, 108, 256, 306
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	375, 503
TspRI	CASTG	4 cut(s)	31, 108, 256, 306
XapI	RAATTY	2 cut(s)	139, 170
XmnI	GAANNNNTTC	3 cut(s)	170, 567, 606
XspI	CTAG	2 cut(s)	411, 705
ZrmI	AGTACT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.