Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010346

Physical Location & Seq

Genomic Coordinates Reverse (-)

50756213 .. 50760781

Gene Structure 4569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0397100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGTTGCGGAGCCTGACGGTGCCTCTGCCCGCCGTAATTCCACCAACCTCCTCTTCCTCTTCTCCTCGCCGGTATAGTCTTACACAAAACAACCGGTACAATCCCCCTTCCTATGTCACTCTCCGCCGCACGCCCACCATCGTCGTTTACAGCCTTCGGATGCGACGGCATGTCGTTCGGATGGCTCCCGAGGAGGAAAGGTTGACCCGTCGCTCCCCTCTCGATTTCCCCATCGAATGGGAAAGACCAAAACCTGGGAGGAGACCAGATATATTTCCCCAGTTTAGCCCTATGAAAACACCTTTACCAACTCCAATGCCAGCAGATCCTCCCGAAGAAGACGAAGAAGAGGAAGAAAAGAAAGAGGATGACGAAGAAGGAGAAGACAATCCTGACAAGGAGAACCCAGGAATCCCAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0051087

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

142

Amino Acids

16.46

Weight (kDa)

5.02

Isoelectric Point (pI)

100.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14200
fragaria_vesca	FvH4_6g35350 FvH4_6g35350
malus_domestica	MD09G1176500.v1.1 MD17G1150300.v1.1
prunus_persica	Prupe.3G035500_v2.0.a1
pyrus_communis	pycom09g09470 pycom17g14360
rosa_chinensis	RchiOBHm_Chr2g0146791
rosa_laevigata	RLG00000020222
rosa_multiflora	Rmu_co8420887.1_g000001 Rmu_sc0015268.1_g000006 Rmu_sc0017620.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099910
rosa_rugosa	Rorug02G0397000 Rorug02G0397100
rosa_samantha	Rh2AG453300 Rh2BG466100 Rh2CG440400 Rh2DG475100
rosa_wichuraiana	Rw2G037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	2 cut(s)	240, 257
AciI	CCGC	4 cut(s)	10, 33, 127, 130
AclWI	GGATC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	240, 257
AgeI	ACCGGT	1 cut(s)	96
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	256, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	191
AsiGI	ACCGGT	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	2 cut(s)	348, 393
BccI	CCATC	3 cut(s)	149, 178, 242
BceAI	ACGGC	2 cut(s)	20, 185
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	2 cut(s)	258, 411
BcoDI	GTCTC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	258, 411
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	3 cut(s)	14, 24, 189
BmrFI	CCNGG	2 cut(s)	258, 411
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	348, 393
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	192, 257, 409
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 257
Bse118I	RCCGGY	2 cut(s)	72, 96
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	258, 411
BseDI	CCNNGG	3 cut(s)	192, 257, 409
BseGI	GGATG	3 cut(s)	168, 189, 376
BseLI	CCNNNNNNNGG	2 cut(s)	240, 257
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	4 cut(s)	43, 57, 209, 277
BshNI	GGYRCC	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	73, 97
BslI	CCNNNNNNNGG	2 cut(s)	240, 257
BsmAI	GTCTC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	10, 33, 127, 130
BspLI	GGNNCC	3 cut(s)	14, 24, 189
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	259
BsrFI	RCCGGY	2 cut(s)	72, 96
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	2 cut(s)	72, 96
BssECI	CCNNGG	3 cut(s)	192, 257, 409
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	258, 411
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	4 cut(s)	61, 67, 345, 417
BstC8I	GCNNGC	3 cut(s)	33, 134, 324
BstF5I	GGATG	3 cut(s)	168, 189, 376
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	328
BstNI	CCWGG	2 cut(s)	258, 411
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	256, 409
BstV2I	GAAGAC	2 cut(s)	348, 393
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	168, 189, 376
Cac8I	GCNNGC	3 cut(s)	33, 134, 324
Cfr10I	RCCGGY	2 cut(s)	72, 96
Csp6I	GTAC	1 cut(s)	100
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	4 cut(s)	15, 156, 188, 291
CviKI_1	RGCY	4 cut(s)	15, 156, 188, 291
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	4 cut(s)	61, 67, 345, 417
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	4 cut(s)	61, 67, 345, 417
EciI	GGCGGA	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	256, 409
FaeI	CATG	1 cut(s)	176
FaiI	YATR	5 cut(s)	78, 117, 174, 275, 296
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	3 cut(s)	175, 196, 383
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
HapII	CCGG	2 cut(s)	73, 97
Hin1II	CATG	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	414
HpaII	CCGG	2 cut(s)	73, 97
Hpy166II	GTNNAC	2 cut(s)	151, 207
Hpy188I	TCNGA	2 cut(s)	162, 183
Hpy188III	TCNNGA	4 cut(s)	191, 224, 335, 395
Hpy8I	GTNNAC	2 cut(s)	151, 207
Hpy99I	CGWCG	3 cut(s)	149, 171, 216
HpyAV	CCTTC	3 cut(s)	120, 167, 374
HpyCH4III	ACNGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	12, 193, 221
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	9 cut(s)	48, 54, 350, 353, 359, 362, 368, 389, 398
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	1 cut(s)	39
MspI	CCGG	2 cut(s)	73, 97
MspR9I	CCNGG	2 cut(s)	258, 411
MvaI	CCWGG	2 cut(s)	258, 411
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	3 cut(s)	14, 24, 189
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	414
PflMI	CCANNNNNTGG	2 cut(s)	240, 257
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	256, 409
PspGI	CCWGG	2 cut(s)	256, 409
PspN4I	GGNNCC	3 cut(s)	14, 24, 189
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	258, 411
SetI	ASST	4 cut(s)	53, 206, 259, 307
SfaNI	GCATC	1 cut(s)	153
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	4 cut(s)	10, 33, 127, 130
StyD4I	CCNGG	2 cut(s)	256, 409
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	225, 237
TasI	AATT	1 cut(s)	39
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	311
Van91I	CCANNNNNTGG	2 cut(s)	240, 257
XceI	RCATGY	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.