Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006477

Physical Location & Seq

Genomic Coordinates Forward (+)

4818251 .. 4821013

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14415.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGATCACTAACGTTACCGAGTATGATGCAATCGCAAAGGCGAAGTTGCCTAAGATGGTATATGACTACTATGCATCTGGTGCAGAAGATCAATGGACTCTTCAAGAGAACAGAAACGCTTTTGCAAGAATCCTCTTCCGGCCTCGGATTTTGATTGATGTGAACAAAATTGATATGGCGACTACCGTCTTGGGGTTCAAGATCTCGATGCCGATCATGGTTGCTCCTACTGCCTTTCAAAAGATGGCTCACCCTGATGGGGAATATGCTACGGCTAGAGCTGCGTCTGCTGCTGGAACCATCATGACACTATCTTCATGGGCTACTTCAAGTGTTGAAGAAGTTGCTTCCACAGGGCCAGGAATCCGATTCTTCCAGCTCTATGTATACAAGAACAGGAAGGTGGTTGAGCAGCTCGTGAGAAGAGCCGAGAAAGCTGGGTTCAAAGCCATTGCTCTCACTGTAGACACCCCAAGGCTAGGTCGCAGAGAGTCTGATATCAAGAACAGATTCACTTTGCCTCCAAACCTGACATTGAAGAACTTTGAAGGTCTTGACCTTGGAAAGATGGACGAGGCCAATGACTCTGGCTTGGCTTCGTATGTTGCTGGTCAAATTGACCGTACCTTGAGCTGGAAGGATATCCAGTGGCTCCAAACAATCACCAACATGCCAATTCTTGTCAAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGAGCAGCAGGGATCATTGTGTCAAATCATGGAGCTCGCCAGCTTGATTATGTCCCAGCAACAATCTCAGCCCTTGAAGAGGTTGTCAAAGCAACACAAGGACGAGTTCCTGTCTTCTTGGATGGTGGTGTTCGACGTGGCACTGATGTCTTCAAGGCACTTGCACTTGGAGCCTCTGGAATATTTATTGGAAGACCAGTGGTTTTTGCACTAGCTGCTGAAGGAGAAGCCGGAGTCAAAAAGGTGCTTCAAATGTTGCGTGATGAGTTCGAGCTAACCATGGCACTAAGTGGGTGCCGGTCACTCAGTGAAATCACCCGTAACCACATTGTCACGGAATGGGACACTCCACGCCATTTGCCCAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

367

Amino Acids

40.31

Weight (kDa)

8.99

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	13 - 361	1.2e-140	FMN-dependent dehydrogenase
IMPDH	PF00478	270 - 320	4.6e-06	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14415 AT3G14415 AT3G14415 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420
fragaria_vesca	FvH4_3g16520
malus_domestica	MD05G1209300.v1.1 MD10G1195700.v1.1
prunus_persica	Prupe.4G148200_v2.0.a1 Prupe.4G148200_v2.0.a1
pyrus_communis	pycom05g19540 pycom10g16930
rosa_chinensis	RchiOBHm_Chr5g0027571
rosa_laevigata	RLG00000033027
rosa_multiflora	Rmu_sc0001647.1_g000002 Rmu_sc0011056.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051970
rosa_rugosa	Rorug05G0099800 Rorug05G0099800
rosa_samantha	Rh5AG194000 Rh5BG192000
rosa_wichuraiana	Rw5G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1026
AccI	GTMKAC	2 cut(s)	390, 468
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	1 cut(s)	752
AcuI	CTGAAG	1 cut(s)	972
AdeI	CACNNNGTG	2 cut(s)	1022, 1040
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	5 cut(s)	195, 262, 482, 636, 811
AjiI	CACGTC	1 cut(s)	869
AjnI	CCWGG	2 cut(s)	361, 1094
Alw21I	GWGCWC	1 cut(s)	769
AlwI	GGATC	1 cut(s)	752
AoxI	GGCC	3 cut(s)	143, 359, 579
ApeKI	GCWGC	5 cut(s)	284, 293, 415, 737, 947
Asp700I	GAANNNNTTC	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	245, 658, 1039
BanI	GGYRCC	1 cut(s)	1026
BanII	GRGCYC	1 cut(s)	769
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	3 cut(s)	838, 874, 931
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	5 cut(s)	271, 280, 427, 749, 934
BccI	CCATC	6 cut(s)	52, 241, 254, 311, 565, 848
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	2 cut(s)	363, 1096
BfaI	CTAG	3 cut(s)	279, 482, 944
BfmI	CTRYAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	5 cut(s)	285, 294, 416, 738, 948
BlsI	GCNGC	5 cut(s)	286, 295, 417, 739, 949
Bme1390I	CCNGG	2 cut(s)	363, 1096
BmgBI	CACGTC	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	4 cut(s)	301, 656, 904, 1028
BmrFI	CCNGG	2 cut(s)	363, 1096
BmsI	GCATC	4 cut(s)	19, 86, 201, 700
BoxI	GACNNNNGTC	1 cut(s)	188
BpiI	GAAGAC	3 cut(s)	838, 874, 931
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	146, 476, 562, 1011, 1094
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 262, 482, 636, 811
Bse118I	RCCGGY	1 cut(s)	1029
Bse1I	ACTGG	2 cut(s)	649, 929
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	363, 1096
BseDI	CCNNGG	5 cut(s)	146, 476, 562, 1011, 1094
BseGI	GGATG	2 cut(s)	715, 859
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	5 cut(s)	195, 262, 482, 636, 811
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	813, 1051
BseNI	ACTGG	2 cut(s)	649, 929
BseXI	GCAGC	5 cut(s)	271, 280, 427, 749, 934
BseYI	CCCAGC	2 cut(s)	440, 787
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	145, 361, 581
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	3 cut(s)	142, 963, 1030
BslFI	GGGAC	2 cut(s)	770, 1088
BslI	CCNNNNNNNGG	5 cut(s)	195, 262, 482, 636, 811
BsmFI	GGGAC	2 cut(s)	770, 1088
BsnI	GGCC	3 cut(s)	145, 361, 581
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	5 cut(s)	6, 91, 204, 216, 744
Bsp19I	CCATGG	1 cut(s)	1011
BspANI	GGCC	3 cut(s)	145, 361, 581
BspCNI	CTCAG	2 cut(s)	812, 1050
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	301, 656, 904, 1028
BspPI	GGATC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	1026
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	1029
BsrI	ACTGG	2 cut(s)	649, 929
BssAI	RCCGGY	1 cut(s)	1029
BssECI	CCNNGG	5 cut(s)	146, 476, 562, 1011, 1094
BssMI	GATC	5 cut(s)	6, 91, 204, 216, 744
BssNAI	GTATAC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	3 cut(s)	476, 562, 1011
Bst1107I	GTATAC	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	363, 1096
Bst4CI	ACNGT	3 cut(s)	190, 466, 626
Bst6I	CTCTTC	4 cut(s)	108, 143, 421, 804
BstAPI	GCANNNNNTGC	2 cut(s)	83, 947
BstC8I	GCNNGC	2 cut(s)	769, 773
BstDEI	CTNAG	4 cut(s)	54, 799, 1019, 1037
BstDSI	CCRYGG	1 cut(s)	1011
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	715, 859
BstKTI	GATC	5 cut(s)	9, 94, 207, 219, 747
BstMBI	GATC	5 cut(s)	6, 91, 204, 216, 744
BstNI	CCWGG	2 cut(s)	363, 1096
BstNSI	RCATGY	1 cut(s)	676
BstPAI	GACNNNNGTC	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	361, 1094
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	5 cut(s)	271, 280, 427, 749, 934
BstV2I	GAAGAC	3 cut(s)	838, 874, 931
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	145, 361, 581
BtgI	CCRYGG	1 cut(s)	1011
BtrI	CACGTC	1 cut(s)	869
BtsCI	GGATG	2 cut(s)	715, 859
BtsIMutI	CAGTG	5 cut(s)	462, 656, 873, 936, 1045
Cac8I	GCNNGC	2 cut(s)	769, 773
CciI	TCATGA	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	1029
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	627
CspCI	CAANNNNNGTGG	1 cut(s)	1071
CviAII	CATG	6 cut(s)	220, 307, 321, 673, 761, 1012
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	4 cut(s)	54, 799, 1019, 1037
DpnI	GATC	5 cut(s)	8, 93, 206, 218, 746
DpnII	GATC	5 cut(s)	6, 91, 204, 216, 744
DraIII	CACNNNGTG	2 cut(s)	1022, 1040
Eam1104I	CTCTTC	4 cut(s)	108, 143, 421, 804
EarI	CTCTTC	4 cut(s)	108, 143, 421, 804
Ecl136II	GAGCTC	1 cut(s)	767
Eco130I	CCWWGG	3 cut(s)	476, 562, 1011
Eco24I	GRGCYC	1 cut(s)	769
Eco32I	GATATC	2 cut(s)	502, 646
Eco53kI	GAGCTC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	972
EcoICRI	GAGCTC	1 cut(s)	767
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoRII	CCWGG	2 cut(s)	361, 1094
EcoRV	GATATC	2 cut(s)	502, 646
EcoT14I	CCWWGG	3 cut(s)	476, 562, 1011
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	769
ErhI	CCWWGG	3 cut(s)	476, 562, 1011
FaeI	CATG	6 cut(s)	223, 310, 324, 676, 764, 1015
FaqI	GGGAC	2 cut(s)	770, 1088
FatI	CATG	6 cut(s)	219, 306, 320, 672, 760, 1011
FblI	GTMKAC	2 cut(s)	390, 468
Fnu4HI	GCNGC	5 cut(s)	285, 294, 416, 738, 948
FokI	GGATG	2 cut(s)	722, 866
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	5 cut(s)	285, 294, 416, 738, 948
FspBI	CTAG	3 cut(s)	279, 482, 944
GluI	GCNGC	5 cut(s)	285, 294, 416, 738, 948
GsaI	CCCAGC	2 cut(s)	444, 791
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	3 cut(s)	145, 361, 581
HapII	CCGG	3 cut(s)	142, 963, 1030
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	6 cut(s)	223, 310, 324, 676, 764, 1015
HinfI	GANTC	9 cut(s)	100, 132, 366, 372, 494, 513, 587, 724, 966
HpaII	CCGG	3 cut(s)	142, 963, 1030
HphI	GGTGA	3 cut(s)	245, 658, 1039
Hpy166II	GTNNAC	3 cut(s)	166, 391, 469
Hpy188I	TCNGA	3 cut(s)	150, 371, 499
Hpy188III	TCNNGA	8 cut(s)	107, 202, 208, 307, 421, 505, 557, 909
Hpy8I	GTNNAC	3 cut(s)	166, 391, 469
Hpy99I	CGWCG	1 cut(s)	870
HpyAV	CCTTC	4 cut(s)	397, 545, 634, 947
HpyCH4III	ACNGT	3 cut(s)	190, 466, 626
HpyCH4IV	ACGT	2 cut(s)	15, 868
HpyCH4V	TGCA	7 cut(s)	32, 77, 86, 128, 713, 896, 941
HpyF3I	CTNAG	4 cut(s)	54, 799, 1019, 1037
HpySE526I	ACGT	2 cut(s)	15, 868
Hsp92II	CATG	6 cut(s)	223, 310, 324, 676, 764, 1015
Kzo9I	GATC	5 cut(s)	6, 91, 204, 216, 744
LguI	GCTCTTC	1 cut(s)	421
LmnI	GCTCC	5 cut(s)	232, 660, 734, 764, 902
Lsp1109I	GCAGC	5 cut(s)	271, 280, 427, 749, 934
LweI	GCATC	4 cut(s)	19, 86, 201, 700
MaeI	CTAG	3 cut(s)	279, 482, 944
MaeII	ACGT	2 cut(s)	15, 868
MaeIII	GTNAC	4 cut(s)	16, 1032, 1052, 1063
MalI	GATC	5 cut(s)	8, 93, 206, 218, 746
MboI	GATC	5 cut(s)	6, 91, 204, 216, 744
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	3 cut(s)	171, 618, 678
MlyI	GAGTC	4 cut(s)	94, 503, 581, 975
MnlI	CCTC	7 cut(s)	146, 156, 534, 571, 700, 805, 916
Mph1103I	ATGCAT	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	512
MslI	CAYNNNNRTG	2 cut(s)	258, 671
MspI	CCGG	3 cut(s)	142, 963, 1030
MspR9I	CCNGG	2 cut(s)	363, 1096
MvaI	CCWGG	2 cut(s)	363, 1096
NcoI	CCATGG	1 cut(s)	1011
NdeII	GATC	5 cut(s)	6, 91, 204, 216, 744
NlaIII	CATG	6 cut(s)	223, 310, 324, 676, 764, 1015
NlaIV	GGNNCC	4 cut(s)	301, 656, 904, 1028
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	2 cut(s)	1032, 1063
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	676
PagI	TCATGA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	5 cut(s)	132, 366, 372, 513, 724
PkrI	GCNGC	5 cut(s)	286, 295, 417, 739, 949
PleI	GAGTC	4 cut(s)	94, 502, 581, 974
PpsI	GAGTC	4 cut(s)	94, 502, 581, 974
PshAI	GACNNNNGTC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	769
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	361, 1094
PspFI	CCCAGC	2 cut(s)	440, 787
PspGI	CCWGG	2 cut(s)	361, 1094
PspN4I	GGNNCC	4 cut(s)	301, 656, 904, 1028
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	2 cut(s)	258, 671
SacI	GAGCTC	1 cut(s)	769
SapI	GCTCTTC	1 cut(s)	421
SatI	GCNGC	5 cut(s)	285, 294, 416, 738, 948
Sau3AI	GATC	5 cut(s)	6, 91, 204, 216, 744
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	4 cut(s)	94, 503, 581, 975
ScrFI	CCNGG	2 cut(s)	363, 1096
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	4 cut(s)	19, 86, 201, 700
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	258, 671
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	3 cut(s)	171, 618, 678
SspI	AATATT	1 cut(s)	915
SspMI	CTAG	3 cut(s)	279, 482, 944
SstI	GAGCTC	1 cut(s)	769
StyD4I	CCNGG	2 cut(s)	361, 1094
StyI	CCWWGG	3 cut(s)	476, 562, 1011
TaaI	ACNGT	3 cut(s)	190, 466, 626
TaiI	ACGT	2 cut(s)	18, 871
TaqI	TCGA	3 cut(s)	209, 865, 1002
TasI	AATT	3 cut(s)	171, 618, 678
TfiI	GAWTC	5 cut(s)	132, 366, 372, 513, 724
TscAI	CASTG	5 cut(s)	469, 656, 880, 936, 1045
TseFI	GTSAC	2 cut(s)	1032, 1063
TseI	GCWGC	5 cut(s)	284, 293, 415, 737, 947
Tsp45I	GTSAC	2 cut(s)	1032, 1063
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	1082
TspRI	CASTG	5 cut(s)	469, 656, 880, 936, 1045
XagI	CCTNNNNNAGG	1 cut(s)	809
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	2 cut(s)	390, 468
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	3 cut(s)	279, 482, 944
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.