pycom05g19540

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
22450967 .. 22453940
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19540.6

Sequence Viewer

Length: 1110 bp
ATGGAGATTACCAACGTCAGCGAGTATGAGGCCATCGCAAAGGAGAAGTTGCCAAAGATGGTCTATGACTACTATGCATCAGGAGCAGAGGACCAGTGGACTCTTGCTGAAAACAGAAATGCTTTCGCAAGAATTCTGTTTCGACCCCGTATTCTCATTGATGTGAGCCGCATAGACATGACCACCACTGTTTTGGGCTTGGAGATCTCAATGCCCATCATGATTGCCCCAACAGCCATGCAGAAAATGGCCCATCCTGAAGGTGAATATGCTACTGCGAGGGCAGCATCATCAGCAGGAACAATTATGACCTTATCTTCATGGGCTACTTCAAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGAATCCGTTTCTTCCAGCTCTATGTCTACAAGGACAGGAATGTGGTTGCTCAGCTGGTGAGAAGAGCTGAAAGGGCTGGGTTCAAGGCTATTGCTCTTACAGTTGATACCCCAAGGCTCGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTTTGCCTCCGTTTTTGACACTGAAGAACTTTGAGGGTTTGGACCTCGGAAAGATGGACGAAGCTGCTGACTCTGGACTTGCTTCGTACGTTGCTGGTCAAATCGATCGTTCTCTTAGCTGGAAGGATGTGCAGTGGCTTCAGACAATCACTTCACTGCCTATCCTAGTTAAGGGTGTTCTCACTGCTGAAGATGCAAGGATTGCAGTACAAGCTGGAGCAGCTGGGATTATTGTGTCCAACCATGGAGCTCGCCAACTTGATTACGTCCCTTCGACTATCATGGCCCTAGAGGAGGTTGTTAAAGCTGCACAAGGACGCATTCCTGTTTTCTTGGATGGTGGTGTTCGTCGTGGAACAGATGTCTTCAAAGCATTAGCATTGGGTGCCTCTGGCATATTTATTGGGCGCCCTGTGGTGTTCTCTCTCGCTGCTGAAGGAGAGGCTGGCATTAGAAAGGTGCTCCAAATGCTGCGCGAAGAGTTTGAGCTAACCATGGCTTTAAGTGGATGCCGTTCGCTCAAAGAGATCACCCGCGATCACATTGTGACTGACTGGGACGTTCCTCGCCCTCGCCATCAGCCGAGGTTATAG

Protein Analysis

370

Amino Acids

40.6

Weight (kDa)

7.8

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 902, 924
AccI GTMKAC 1 cut(s) 390
AccII CGCG 2 cut(s) 993, 1053
AciI CCGC 2 cut(s) 169, 1051
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 5 cut(s) 279, 560, 641, 726, 972
AcyI GRCGYC 1 cut(s) 925
AdeI CACNNNGTG 1 cut(s) 1063
AfaI GTAC 2 cut(s) 605, 726
AfiI CCNNNNNNNGG 3 cut(s) 482, 688, 811
AgsI TTSAA 5 cut(s) 333, 341, 354, 448, 886
AjnI CCWGG 1 cut(s) 361
Alw21I GWGCWC 2 cut(s) 769, 981
AoxI GGCC 3 cut(s) 30, 249, 801
ApeKI GCWGC 6 cut(s) 284, 581, 737, 824, 947, 988
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 2 cut(s) 927, 993
AspS9I GGNCC 5 cut(s) 91, 250, 359, 559, 802
AsuHPI GGTGA 3 cut(s) 275, 433, 1039
AvaII GGWCC 3 cut(s) 91, 359, 559
BanI GGYRCC 2 cut(s) 902, 924
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 769, 981
BbvI GCAGC 6 cut(s) 296, 568, 749, 811, 934, 975
BccI CCATC 7 cut(s) 41, 52, 224, 261, 565, 848, 1101
BceAI ACGGC 1 cut(s) 1014
BciT130I CCWGG 1 cut(s) 363
BfaI CTAG 2 cut(s) 683, 806
BfoI RGCGCY 1 cut(s) 928
BglII AGATCT 1 cut(s) 204
BisI GCNGC 7 cut(s) 169, 285, 582, 738, 825, 948, 989
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 7 cut(s) 170, 286, 583, 739, 826, 949, 990
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 3 cut(s) 91, 359, 559
BmgT120I GGNCC 5 cut(s) 91, 250, 359, 559, 802
BmiI GGNNCC 2 cut(s) 904, 926
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 1081
BmsI GCATC 4 cut(s) 86, 296, 700, 1016
BmuI ACTGGG 1 cut(s) 1081
BpiI GAAGAC 1 cut(s) 874
BpmI CTGGAG 1 cut(s) 753
Bpu1102I GCTNAGC 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 925
BsaJI CCNNGG 5 cut(s) 476, 562, 760, 1011, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 688, 811
Bse1I ACTGG 3 cut(s) 94, 361, 1076
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 5 cut(s) 476, 562, 760, 1011, 1100
BseGI GGATG 4 cut(s) 253, 649, 859, 1031
BseLI CCNNNNNNNGG 3 cut(s) 482, 688, 811
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 3 cut(s) 94, 361, 1076
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 6 cut(s) 296, 568, 749, 811, 934, 975
BseYI CCCAGC 2 cut(s) 440, 740
BsgI GTGCAG 2 cut(s) 668, 810
Bsh1236I CGCG 2 cut(s) 993, 1053
Bsh1285I CGRYCG 2 cut(s) 487, 625
BshFI GGCC 3 cut(s) 32, 251, 803
BshNI GGYRCC 2 cut(s) 902, 924
BshVI ATCGAT 1 cut(s) 621
BsiEI CGRYCG 2 cut(s) 487, 625
BsiHKAI GWGCWC 2 cut(s) 769, 981
BsiWI CGTACG 1 cut(s) 603
BslFI GGGAC 2 cut(s) 770, 1088
BslI CCNNNNNNNGG 3 cut(s) 482, 688, 811
BsmFI GGGAC 2 cut(s) 770, 1088
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 3 cut(s) 32, 251, 803
Bsp1286I GDGCHC 2 cut(s) 769, 981
Bsp143I GATC 4 cut(s) 204, 622, 1044, 1054
Bsp1720I GCTNAGC 1 cut(s) 414
Bsp19I CCATGG 2 cut(s) 760, 1011
BspACI CCGC 2 cut(s) 169, 1051
BspANI GGCC 3 cut(s) 32, 251, 803
BspCNI CTCAG 1 cut(s) 427
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 2 cut(s) 993, 1053
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 904, 926
BspQI GCTCTTC 1 cut(s) 421
BspT107I GGYRCC 2 cut(s) 902, 924
BsrI ACTGG 3 cut(s) 94, 361, 1076
BssECI CCNNGG 5 cut(s) 476, 562, 760, 1011, 1100
BssMI GATC 4 cut(s) 204, 622, 1044, 1054
BssNI GRCGYC 1 cut(s) 925
BssT1I CCWWGG 3 cut(s) 476, 760, 1011
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 190, 466
Bst6I CTCTTC 3 cut(s) 336, 421, 990
BstACI GRCGYC 1 cut(s) 925
BstAPI GCANNNNNTGC 2 cut(s) 719, 902
BstC8I GCNNGC 2 cut(s) 769, 964
BstDEI CTNAG 2 cut(s) 414, 632
BstDSI CCRYGG 2 cut(s) 760, 1011
BstENI CCTNNNNNAGG 2 cut(s) 686, 809
BstF5I GGATG 4 cut(s) 253, 649, 859, 1031
BstFNI CGCG 2 cut(s) 993, 1053
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 2 cut(s) 927, 993
BstKTI GATC 4 cut(s) 207, 625, 1047, 1057
BstMAI GTCTC 5 cut(s) 578, 943, 1400, 2077, 2272
BstMBI GATC 4 cut(s) 204, 622, 1044, 1054
BstMCI CGRYCG 2 cut(s) 487, 625
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstUI CGCG 2 cut(s) 993, 1053
BstV1I GCAGC 6 cut(s) 296, 568, 749, 811, 934, 975
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 3 cut(s) 32, 251, 803
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 2 cut(s) 760, 1011
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 4 cut(s) 649, 859, 1031, 2115
BtsI GCAGTG 3 cut(s) 656, 671, 699
BtsIMutI CAGTG 6 cut(s) 101, 186, 536, 656, 671, 699
Cac8I GCNNGC 2 cut(s) 769, 964
CciI TCATGA 1 cut(s) 219
CfoI GCGC 2 cut(s) 927, 993
Cfr13I GGNCC 5 cut(s) 91, 250, 359, 559, 802
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 1 cut(s) 843
Csp6I GTAC 2 cut(s) 604, 725
CviAII CATG 7 cut(s) 178, 220, 238, 321, 761, 799, 1012
CviQI GTAC 2 cut(s) 604, 725
DdeI CTNAG 2 cut(s) 414, 632
DinI GGCGCC 1 cut(s) 926
DpnI GATC 4 cut(s) 206, 624, 1046, 1056
DpnII GATC 4 cut(s) 204, 622, 1044, 1054
DraIII CACNNNGTG 1 cut(s) 1063
Eam1104I CTCTTC 3 cut(s) 336, 421, 990
EarI CTCTTC 3 cut(s) 336, 421, 990
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 3 cut(s) 476, 760, 1011
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 3 cut(s) 91, 359, 559
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 5 cut(s) 279, 560, 641, 726, 972
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 2 cut(s) 686, 809
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 476, 760, 1011
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 769
EgeI GGCGCC 1 cut(s) 926
EheI GGCGCC 1 cut(s) 926
ErhI CCWWGG 3 cut(s) 476, 760, 1011
FaeI CATG 7 cut(s) 181, 223, 241, 324, 764, 802, 1015
FaqI GGGAC 2 cut(s) 770, 1088
FatI CATG 7 cut(s) 177, 219, 237, 320, 760, 798, 1011
FauI CCCGC 1 cut(s) 1058
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 169, 285, 582, 738, 825, 948, 989
FokI GGATG 4 cut(s) 240, 656, 866, 1038
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 7 cut(s) 169, 285, 582, 738, 825, 948, 989
FspBI CTAG 2 cut(s) 683, 806
GlaI GCGC 2 cut(s) 926, 992
GluI GCNGC 7 cut(s) 169, 285, 582, 738, 825, 948, 989
GsaI CCCAGC 2 cut(s) 444, 744
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 3 cut(s) 32, 251, 803
HgaI GACGC 1 cut(s) 843
HhaI GCGC 2 cut(s) 927, 993
Hin1I GRCGYC 1 cut(s) 925
Hin1II CATG 7 cut(s) 181, 223, 241, 324, 764, 802, 1015
Hin6I GCGC 2 cut(s) 925, 991
HinP1I GCGC 2 cut(s) 925, 991
HinfI GANTC 3 cut(s) 100, 366, 587
HphI GGTGA 3 cut(s) 275, 433, 1039
Hpy166II GTNNAC 2 cut(s) 99, 391
Hpy188I TCNGA 2 cut(s) 566, 660
Hpy188III TCNNGA 5 cut(s) 81, 220, 257, 505, 591
Hpy8I GTNNAC 2 cut(s) 99, 391
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 4 cut(s) 254, 634, 798, 947
HpyCH4III ACNGT 2 cut(s) 190, 466
HpyCH4IV ACGT 4 cut(s) 15, 606, 783, 1077
HpyCH4V TGCA 6 cut(s) 77, 241, 649, 713, 722, 827
HpyF3I CTNAG 2 cut(s) 414, 632
HpySE526I ACGT 4 cut(s) 15, 606, 783, 1077
Hsp92I GRCGYC 1 cut(s) 925
Hsp92II CATG 7 cut(s) 181, 223, 241, 324, 764, 802, 1015
HspAI GCGC 2 cut(s) 925, 991
KasI GGCGCC 1 cut(s) 924
Kzo9I GATC 4 cut(s) 204, 622, 1044, 1054
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 4 cut(s) 83, 734, 764, 984
Lsp1109I GCAGC 6 cut(s) 296, 568, 749, 811, 934, 975
LweI GCATC 4 cut(s) 86, 296, 700, 1016
MaeI CTAG 2 cut(s) 683, 806
MaeII ACGT 4 cut(s) 15, 606, 783, 1077
MaeIII GTNAC 1 cut(s) 1063
MalI GATC 4 cut(s) 206, 624, 1046, 1056
MboI GATC 4 cut(s) 204, 622, 1044, 1054
MboII GAAGA 8 cut(s) 309, 353, 367, 438, 553, 719, 874, 1007
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 769, 981
MluCI AATT 2 cut(s) 132, 303
Mly113I GGCGCC 1 cut(s) 925
MlyI GAGTC 2 cut(s) 94, 581
MmeI TCCRAC 1 cut(s) 780
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 3 cut(s) 687, 819, 1019
MslI CAYNNNNRTG 2 cut(s) 161, 176
MspA1I CMGCKG 2 cut(s) 418, 740
MspR9I CCNGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 837
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 2 cut(s) 993, 1053
NarI GGCGCC 1 cut(s) 925
NcoI CCATGG 2 cut(s) 760, 1011
NdeII GATC 4 cut(s) 204, 622, 1044, 1054
NlaIII CATG 7 cut(s) 181, 223, 241, 324, 764, 802, 1015
NlaIV GGNNCC 2 cut(s) 904, 926
NmuCI GTSAC 1 cut(s) 1063
NsiI ATGCAT 1 cut(s) 79
PagI TCATGA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 421
PctI GAATGC 1 cut(s) 837
PfeI GAWTC 1 cut(s) 366
Pfl23II CGTACG 1 cut(s) 603
PkrI GCNGC 7 cut(s) 170, 286, 583, 739, 826, 949, 990
Ple19I CGATCG 1 cut(s) 625
PleI GAGTC 2 cut(s) 94, 581
PluTI GGCGCC 1 cut(s) 928
PpsI GAGTC 2 cut(s) 94, 581
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 2 cut(s) 440, 740
PspGI CCWGG 1 cut(s) 361
PspLI CGTACG 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 904, 926
PspPI GGNCC 5 cut(s) 91, 250, 359, 559, 802
PsuI RGATCY 1 cut(s) 204
PvuI CGATCG 1 cut(s) 625
PvuII CAGCTG 2 cut(s) 418, 740
RsaI GTAC 2 cut(s) 605, 726
RsaNI GTAC 2 cut(s) 604, 725
RseI CAYNNNNRTG 2 cut(s) 161, 176
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 687, 819, 1019
SatI GCNGC 7 cut(s) 169, 285, 582, 738, 825, 948, 989
Sau3AI GATC 4 cut(s) 204, 622, 1044, 1054
Sau96I GGNCC 5 cut(s) 91, 250, 359, 559, 802
SchI GAGTC 2 cut(s) 94, 581
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 2 cut(s) 769, 981
SfaNI GCATC 4 cut(s) 86, 296, 700, 1016
SfoI GGCGCC 1 cut(s) 926
SinI GGWCC 3 cut(s) 91, 359, 559
SmiMI CAYNNNNRTG 2 cut(s) 161, 176
Sse9I AATT 2 cut(s) 132, 303
SsiI CCGC 2 cut(s) 169, 1051
SspDI GGCGCC 1 cut(s) 924
SspMI CTAG 2 cut(s) 683, 806
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 3 cut(s) 476, 760, 1011
TaaI ACNGT 2 cut(s) 190, 466
TaiI ACGT 4 cut(s) 18, 609, 786, 1080
TaqI TCGA 3 cut(s) 142, 621, 791
TaqII GACCGA 1 cut(s) 473
TasI AATT 2 cut(s) 132, 303
TatI WGTACW 1 cut(s) 724
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 3 cut(s) 687, 819, 1019
Tru9I TTAA 3 cut(s) 687, 819, 1019
TscAI CASTG 6 cut(s) 101, 193, 543, 656, 678, 706
TseFI GTSAC 1 cut(s) 1063
TseI GCWGC 6 cut(s) 284, 581, 737, 824, 947, 988
Tsp45I GTSAC 1 cut(s) 1063
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 2 cut(s) 359, 516
TspRI CASTG 6 cut(s) 101, 193, 543, 656, 678, 706
VpaK11BI GGWCC 3 cut(s) 91, 359, 559
XagI CCTNNNNNAGG 2 cut(s) 686, 809
XapI RAATTY 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 2 cut(s) 190, 244
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 2 cut(s) 683, 806
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.