Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006477

Physical Location & Seq

Genomic Coordinates Forward (+)

8821759 .. 8823734

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGAGTGTTCTTGTCCTTCGCACTGTTGTTATCGTGGCCTTCCTCGCTCTCTCGAACCTCGAGCTCTGCGCCATTGCTGATCTTCCAGGACATGGCCATGCCGCTTTCATGGCAGACATTGCTGAGAACACCTGGTGTATGGCAAAGCCAACTGCCGCTGATAGTTTGCTACAATTGAACATTGACTTTGCTTGTAGTAAAGTCAACTGTAGTGTAATTGAACCCGGTGGTGAATGCCAATTACCAGACACTCTAATGAACCACGCATCTGTTGCCATGAATCTTTACTACCAATCTTTTGGCAGAACAGATTTGAGCTGTTATTTTCAGTCGACCGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATGAAAGGGTTGTCCTCGTGAGGGATGCTGTCCCTGCAAGTATCAAAATAAAGAAGGGGGAAAGTAAGGCCTTTTCTGCAACATCAATTGGACTTATGGTGGTGTGGTCGATCACTGGTTGTGGACTGGTGGCAGTGGCTGTATATGTTATGCTCTGGCTTCATCAGACCCGCGCACCAGTGGTGGGAGTTCCTGTGCACACATTGCCAGAGCCATTGTATTCGCGGCCGGAGCCATCAGCTCCCCCGCTTCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

213

Amino Acids

22.77

Weight (kDa)

5.44

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	45 - 115	7.5e-18	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14415 AT3G14415 AT3G14415 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420
fragaria_vesca	FvH4_3g16520
malus_domestica	MD05G1209300.v1.1 MD10G1195700.v1.1
prunus_persica	Prupe.4G148200_v2.0.a1 Prupe.4G148200_v2.0.a1
pyrus_communis	pycom05g19540 pycom10g16930
rosa_chinensis	RchiOBHm_Chr5g0027571
rosa_laevigata	RLG00000033027
rosa_multiflora	Rmu_sc0001647.1_g000002 Rmu_sc0011056.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051970
rosa_rugosa	Rorug05G0099800 Rorug05G0099800
rosa_samantha	Rh5AG194000 Rh5BG192000
rosa_wichuraiana	Rw5G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	95, 368
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	2 cut(s)	555, 607
AciI	CCGC	5 cut(s)	105, 159, 553, 607, 629
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	97, 608
AdeI	CACNNNGTG	1 cut(s)	138
AfiI	CCNNNNNNNGG	4 cut(s)	95, 368, 403, 566
AgsI	TTSAA	3 cut(s)	181, 224, 356
AjnI	CCWGG	2 cut(s)	88, 134
AluBI	AGCT	3 cut(s)	67, 321, 623
AluI	AGCT	3 cut(s)	67, 321, 623
Alw21I	GWGCWC	2 cut(s)	69, 582
Alw44I	GTGCAC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	39, 97, 450, 608
ApaLI	GTGCAC	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	74, 557
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	69, 582
BccI	CCATC	1 cut(s)	625
BciT130I	CCWGG	2 cut(s)	90, 136
BcnI	CCSGG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	3 cut(s)	105, 159, 608
BlsI	GCNGC	3 cut(s)	106, 160, 609
Bme1390I	CCNGG	3 cut(s)	90, 136, 228
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	3 cut(s)	90, 136, 228
BmsI	GCATC	2 cut(s)	278, 397
BpuMI	CCSGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 368, 403, 566
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	502, 513, 560
Bse3DI	GCAATG	3 cut(s)	75, 120, 584
BseBI	CCWGG	2 cut(s)	90, 136
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	4 cut(s)	95, 368, 403, 566
BseMI	GCAATG	3 cut(s)	75, 120, 584
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	502, 513, 560
BseSI	GKGCMC	1 cut(s)	582
BseX3I	CGGCCG	1 cut(s)	608
Bsh1236I	CGCG	2 cut(s)	555, 607
Bsh1285I	CGRYCG	2 cut(s)	339, 611
BshFI	GGCC	4 cut(s)	41, 99, 452, 610
BsiEI	CGRYCG	2 cut(s)	339, 611
BsiHKAI	GWGCWC	2 cut(s)	69, 582
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	228, 339, 611
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	4 cut(s)	95, 368, 403, 566
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	41, 99, 452, 610
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	69, 582
Bsp143I	GATC	3 cut(s)	82, 358, 492
BspACI	CCGC	5 cut(s)	105, 159, 553, 607, 629
BspANI	GGCC	4 cut(s)	41, 99, 452, 610
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	2 cut(s)	555, 607
BspLI	GGNNCC	1 cut(s)	615
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	3 cut(s)	75, 120, 584
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	502, 513, 560
BssAI	RCCGGY	1 cut(s)	338
BssMI	GATC	3 cut(s)	82, 358, 492
BssSI	CACGAG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	90, 136
Bst4CI	ACNGT	2 cut(s)	28, 212
BstAPI	GCANNNNNTGC	3 cut(s)	122, 275, 586
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	2 cut(s)	555, 607
BstHHI	GCGC	2 cut(s)	74, 557
BstKTI	GATC	3 cut(s)	85, 361, 495
BstMBI	GATC	3 cut(s)	82, 358, 492
BstMCI	CGRYCG	2 cut(s)	339, 611
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 113, 122, 275, 416, 458, 586, 613
BstNI	CCWGG	2 cut(s)	90, 136
BstSCI	CCNGG	3 cut(s)	88, 134, 226
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	582
BstUI	CGCG	2 cut(s)	555, 607
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	608
BsuRI	GGCC	4 cut(s)	41, 99, 452, 610
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	4 cut(s)	24, 495, 522, 567
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	2 cut(s)	74, 557
Cfr10I	RCCGGY	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	134
CviAII	CATG	5 cut(s)	95, 101, 112, 280, 343
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	84, 360, 494
DpnII	GATC	3 cut(s)	82, 358, 492
DraIII	CACNNNGTG	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	97, 608
EagI	CGGCCG	1 cut(s)	608
Ecl136II	GAGCTC	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	608
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	69
Eco52I	CGGCCG	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	88, 134
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	5 cut(s)	98, 104, 115, 283, 346
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	5 cut(s)	94, 100, 111, 279, 342
FauI	CCCGC	2 cut(s)	560, 636
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	105, 159, 608
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	105, 159, 608
GlaI	GCGC	2 cut(s)	73, 556
GluI	GCNGC	3 cut(s)	105, 159, 608
HaeIII	GGCC	4 cut(s)	41, 99, 452, 610
HapII	CCGG	3 cut(s)	228, 339, 611
HhaI	GCGC	2 cut(s)	74, 557
Hin1II	CATG	5 cut(s)	98, 104, 115, 283, 346
Hin6I	GCGC	2 cut(s)	72, 555
HinP1I	GCGC	2 cut(s)	72, 555
HincII	GTYRAC	2 cut(s)	208, 336
HindII	GTYRAC	2 cut(s)	208, 336
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	228, 339, 611
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	4 cut(s)	208, 336, 506, 580
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	3 cut(s)	55, 369, 400
Hpy8I	GTNNAC	4 cut(s)	208, 336, 506, 580
HpyAV	CCTTC	3 cut(s)	29, 52, 430
HpyCH4III	ACNGT	2 cut(s)	28, 212
HpyCH4V	TGCA	3 cut(s)	419, 461, 580
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 113, 122, 275, 416, 458, 586, 613
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	98, 104, 115, 283, 346
HspAI	GCGC	2 cut(s)	72, 555
Kzo9I	GATC	3 cut(s)	82, 358, 492
LmnI	GCTCC	2 cut(s)	613, 628
LweI	GCATC	2 cut(s)	278, 397
MabI	ACCWGGT	1 cut(s)	134
MalI	GATC	3 cut(s)	84, 360, 494
MboI	GATC	3 cut(s)	82, 358, 492
MboII	GAAGA	2 cut(s)	77, 368
MfeI	CAATTG	2 cut(s)	176, 468
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	69, 582
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	4 cut(s)	176, 219, 242, 468
MluNI	TGGCCA	1 cut(s)	99
MnlI	CCTC	4 cut(s)	56, 71, 396, 407
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MslI	CAYNNNNRTG	3 cut(s)	99, 257, 347
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	228, 339, 611
MspR9I	CCNGG	3 cut(s)	90, 136, 228
MunI	CAATTG	2 cut(s)	176, 468
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	90, 136
MvnI	CGCG	2 cut(s)	555, 607
MwoI	GCNNNNNNNGC	8 cut(s)	47, 113, 122, 275, 416, 458, 586, 613
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	82, 358, 492
NlaIII	CATG	5 cut(s)	98, 104, 115, 283, 346
NlaIV	GGNNCC	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	452
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	2 cut(s)	95, 368
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	106, 160, 609
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	88, 134
PspGI	CCWGG	2 cut(s)	88, 134
PspN4I	GGNNCC	1 cut(s)	615
PspXI	VCTCGAGB	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	99, 257, 347
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	334
SatI	GCNGC	3 cut(s)	105, 159, 608
Sau3AI	GATC	3 cut(s)	82, 358, 492
ScrFI	CCNGG	3 cut(s)	90, 136, 228
SduI	GDGCHC	2 cut(s)	69, 582
SetI	ASST	5 cut(s)	63, 69, 137, 323, 625
SexAI	ACCWGGT	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	278, 397
SfcI	CTRYAG	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	3 cut(s)	99, 257, 347
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	176, 219, 242, 468
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	5 cut(s)	105, 159, 553, 607, 629
SstI	GAGCTC	1 cut(s)	69
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	88, 134, 226
TaaI	ACNGT	2 cut(s)	28, 212
TaqI	TCGA	4 cut(s)	56, 63, 335, 491
TasI	AATT	4 cut(s)	176, 219, 242, 468
TauI	GCSGC	3 cut(s)	107, 161, 610
TfiI	GAWTC	1 cut(s)	283
TscAI	CASTG	4 cut(s)	31, 502, 522, 567
TspDTI	ATGAA	5 cut(s)	100, 275, 296, 399, 533
TspRI	CASTG	4 cut(s)	31, 502, 522, 567
Van91I	CCANNNNNTGG	2 cut(s)	95, 368
VneI	GTGCAC	1 cut(s)	578
XhoI	CTCGAG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.