AT3G14420

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
4821391 .. 4824178
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14420.5

Sequence Viewer

Length: 1104 bp
ATGGAGATCACTAACGTTACCGAGTATGATGCAATCGCAAAGCAGAAGCTGCCTAAGATGGTGTACGACTACTATGCATCTGGTGCAGAAGACCAATGGACTCTTCAAGAGAACAGAAACGCTTTTGCAAGGATCCTCTTTCGGCCTCGGATTCTGATTGATGTGAGCAAGATTGACATGACAACCACCGTCTTGGGGTTCAAGATCTCGATGCCCATCATGGTTGCTCCAACTGCCATGCAAAAGATGGCTCACCCTGATGGGGAATATGCTACTGCTAGAGCTGCATCTGCAGCTGGAACTATCATGACACTATCTTCATGGGCTACTTCCAGCGTTGAAGAAGTTGCGTCTACAGGGCCAGGGATCCGATTCTTCCAGCTCTATGTATACAAGAACAGGAATGTGGTTGAGCAGCTCGTGAGAAGAGCTGAGAGGGCTGGGTTCAAAGCCATTGCTCTCACTGTAGACACCCCAAGGCTAGGCCGCAGAGAGTCTGATATCAAGAACAGATTCACTTTGCCTCCAAACCTGACATTGAAGAACTTTGAAGGACTTGACCTCGGAAAGATGGACGAGGCCAATGACTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACCTTAAGCTGGAAGGATGTCCAGTGGCTCCAGACAATCACCAAGTTGCCCATTCTTGTCAAAGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTGCAGCCGGAATCATTGTATCAAACCATGGAGCTCGCCAGCTTGACTATGTCCCAGCAACCATCTCGGCCCTTGAAGAGGTTGTCAAAGCGACACAAGGACGAATTCCTGTCTTCTTGGATGGTGGTGTTCGACGTGGCACTGATGTCTTCAAAGCACTTGCACTTGGAGCCTCCGGGATATTTATTGGAAGACCAGTGGTATTCTCATTGGCAGCTGAAGGAGAGGCTGGAGTTAGAAAGGTGCTTCAAATGCTACGTGATGAGTTCGAGCTGACCATGGCACTGAGTGGGTGTCGGTCCCTAAAGGAAATCTCCCGTAACCACATTACCACCGAATGGGACACTCCACGTCCTTCAGCCAGGTTATAG

Protein Analysis

367

Amino Acids

40.34

Weight (kDa)

9.16

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 38 - 348 2.1e-125 FMN-dependent dehydrogenase
IMPDH PF00478 257 - 304 6.3e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1071
AccI GTMKAC 3 cut(s) 353, 390, 468
AciI CCGC 1 cut(s) 487
AclI AACGTT 1 cut(s) 15
AclWI GGATC 4 cut(s) 127, 140, 361, 374
AcsI RAATTY 1 cut(s) 837
AcuI CTGAAG 2 cut(s) 972, 1074
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 2 cut(s) 65, 628
AfiI CCNNNNNNNGG 6 cut(s) 195, 262, 482, 636, 811, 1071
AflII CTTAAG 1 cut(s) 631
AjiI CACGTC 2 cut(s) 869, 1085
AjnI CCWGG 2 cut(s) 361, 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
Alw21I GWGCWC 1 cut(s) 769
AlwI GGATC 4 cut(s) 127, 140, 361, 374
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 5 cut(s) 143, 359, 484, 579, 801
ApeKI GCWGC 6 cut(s) 49, 284, 293, 415, 737, 947
ApoI RAATTY 1 cut(s) 837
Asp700I GAANNNNTTC 1 cut(s) 512
AspS9I GGNCC 3 cut(s) 359, 802, 1032
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 2 cut(s) 245, 658
AvaII GGWCC 1 cut(s) 1032
BamHI GGATCC 2 cut(s) 132, 366
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 419
BbsI GAAGAC 4 cut(s) 96, 838, 874, 931
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 6 cut(s) 36, 271, 305, 427, 749, 959
BccI CCATC 7 cut(s) 52, 224, 241, 254, 565, 803, 848
BcgI CGANNNNNNTGC 6 cut(s) 11, 45, 56, 90, 780, 814
BciT130I CCWGG 2 cut(s) 363, 1096
BcnI CCSGG 1 cut(s) 910
BfaI CTAG 2 cut(s) 279, 482
BfmI CTRYAG 3 cut(s) 291, 354, 465
BfrI CTTAAG 1 cut(s) 631
BglII AGATCT 1 cut(s) 204
BisI GCNGC 7 cut(s) 50, 285, 294, 416, 487, 738, 948
BlsI GCNGC 7 cut(s) 51, 286, 295, 417, 488, 739, 949
Bme1390I CCNGG 3 cut(s) 363, 910, 1096
Bme18I GGWCC 1 cut(s) 1032
BmgBI CACGTC 2 cut(s) 869, 1085
BmgT120I GGNCC 3 cut(s) 359, 802, 1032
BmiI GGNNCC 5 cut(s) 134, 368, 656, 904, 1034
BmrFI CCNGG 3 cut(s) 363, 910, 1096
BmsI GCATC 5 cut(s) 19, 86, 201, 296, 700
BpiI GAAGAC 4 cut(s) 96, 838, 874, 931
BpmI CTGGAG 2 cut(s) 641, 984
BpuMI CCSGG 1 cut(s) 910
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 1 cut(s) 215
BsaJI CCNNGG 6 cut(s) 146, 362, 476, 562, 760, 1011
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 6 cut(s) 195, 262, 482, 636, 811, 1071
Bse1I ACTGG 2 cut(s) 649, 929
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 2 cut(s) 363, 1096
BseDI CCNNGG 6 cut(s) 146, 362, 476, 562, 760, 1011
BseGI GGATG 3 cut(s) 649, 715, 859
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 6 cut(s) 195, 262, 482, 636, 811, 1071
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 423, 1010
BseNI ACTGG 2 cut(s) 649, 929
BseXI GCAGC 6 cut(s) 36, 271, 305, 427, 749, 959
BseYI CCCAGC 2 cut(s) 440, 787
BsgI GTGCAG 2 cut(s) 105, 756
BshFI GGCC 5 cut(s) 145, 361, 486, 581, 803
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 2 cut(s) 741, 909
BslFI GGGAC 3 cut(s) 770, 1018, 1088
BslI CCNNNNNNNGG 6 cut(s) 195, 262, 482, 636, 811, 1071
BsmFI GGGAC 3 cut(s) 770, 1018, 1088
BsnI GGCC 5 cut(s) 145, 361, 486, 581, 803
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 4 cut(s) 6, 132, 204, 366
Bsp19I CCATGG 2 cut(s) 760, 1011
BspACI CCGC 1 cut(s) 487
BspANI GGCC 5 cut(s) 145, 361, 486, 581, 803
BspCNI CTCAG 2 cut(s) 424, 1011
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 5 cut(s) 134, 368, 656, 904, 1034
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 4 cut(s) 127, 140, 361, 374
BspQI GCTCTTC 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 2 cut(s) 649, 929
BssECI CCNNGG 6 cut(s) 146, 362, 476, 562, 760, 1011
BssMI GATC 4 cut(s) 6, 132, 204, 366
BssNAI GTATAC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 3 cut(s) 476, 760, 1011
Bst1107I GTATAC 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 363, 1096
Bst4CI ACNGT 3 cut(s) 190, 466, 626
Bst6I CTCTTC 3 cut(s) 108, 421, 804
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 2 cut(s) 49, 83
BstBAI YACGTR 1 cut(s) 992
BstC8I GCNNGC 2 cut(s) 769, 773
BstDEI CTNAG 3 cut(s) 54, 432, 1019
BstDSI CCRYGG 2 cut(s) 760, 1011
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 3 cut(s) 649, 715, 859
BstKTI GATC 4 cut(s) 9, 135, 207, 369
BstMBI GATC 4 cut(s) 6, 132, 204, 366
BstNI CCWGG 2 cut(s) 363, 1096
BstSCI CCNGG 3 cut(s) 361, 908, 1094
BstSFI CTRYAG 3 cut(s) 291, 354, 465
BstV1I GCAGC 6 cut(s) 36, 271, 305, 427, 749, 959
BstV2I GAAGAC 4 cut(s) 96, 838, 874, 931
BstX2I RGATCY 3 cut(s) 132, 204, 366
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 3 cut(s) 132, 204, 366
BstZ17I GTATAC 1 cut(s) 391
BsuRI GGCC 5 cut(s) 145, 361, 486, 581, 803
BtgI CCRYGG 2 cut(s) 760, 1011
BtrI CACGTC 2 cut(s) 869, 1085
BtsCI GGATG 3 cut(s) 649, 715, 859
BtsIMutI CAGTG 5 cut(s) 462, 656, 873, 936, 1016
Cac8I GCNNGC 2 cut(s) 769, 773
CaiI CAGNNNCTG 1 cut(s) 49
CciI TCATGA 1 cut(s) 306
Cfr13I GGNCC 3 cut(s) 359, 802, 1032
CseI GACGC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 64, 627
CviAII CATG 7 cut(s) 178, 220, 238, 307, 321, 761, 1012
CviQI GTAC 2 cut(s) 64, 627
DdeI CTNAG 3 cut(s) 54, 432, 1019
DpnI GATC 4 cut(s) 8, 134, 206, 368
DpnII GATC 4 cut(s) 6, 132, 204, 366
DraIII CACNNNGTG 1 cut(s) 1022
Eam1104I CTCTTC 3 cut(s) 108, 421, 804
EarI CTCTTC 3 cut(s) 108, 421, 804
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 3 cut(s) 476, 760, 1011
Eco24I GRGCYC 1 cut(s) 769
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 1032
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 972, 1074
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 2 cut(s) 361, 1094
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 3 cut(s) 476, 760, 1011
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 3 cut(s) 476, 760, 1011
FaeI CATG 7 cut(s) 181, 223, 241, 310, 324, 764, 1015
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 3 cut(s) 770, 1018, 1088
FatI CATG 7 cut(s) 177, 219, 237, 306, 320, 760, 1011
FauNDI CATATG 1 cut(s) 604
FblI GTMKAC 3 cut(s) 353, 390, 468
Fnu4HI GCNGC 7 cut(s) 50, 285, 294, 416, 487, 738, 948
FokI GGATG 3 cut(s) 656, 722, 866
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 7 cut(s) 50, 285, 294, 416, 487, 738, 948
FspBI CTAG 2 cut(s) 279, 482
GluI GCNGC 7 cut(s) 50, 285, 294, 416, 487, 738, 948
GsaI CCCAGC 2 cut(s) 444, 791
GsuI CTGGAG 2 cut(s) 641, 984
HaeIII GGCC 5 cut(s) 145, 361, 486, 581, 803
HapII CCGG 2 cut(s) 741, 909
HgaI GACGC 1 cut(s) 339
Hin1II CATG 7 cut(s) 181, 223, 241, 310, 324, 764, 1015
HinfI GANTC 8 cut(s) 100, 151, 372, 494, 513, 587, 724, 744
HpaII CCGG 2 cut(s) 741, 909
HphI GGTGA 2 cut(s) 245, 658
Hpy166II GTNNAC 4 cut(s) 64, 354, 391, 469
Hpy188I TCNGA 5 cut(s) 150, 156, 371, 499, 566
Hpy188III TCNNGA 7 cut(s) 107, 202, 208, 307, 421, 505, 658
Hpy8I GTNNAC 4 cut(s) 64, 354, 391, 469
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 4 cut(s) 545, 634, 947, 1098
HpyCH4III ACNGT 3 cut(s) 190, 466, 626
HpyCH4IV ACGT 4 cut(s) 15, 868, 991, 1084
HpyF3I CTNAG 3 cut(s) 54, 432, 1019
HpySE526I ACGT 4 cut(s) 15, 868, 991, 1084
Hsp92II CATG 7 cut(s) 181, 223, 241, 310, 324, 764, 1015
Kzo9I GATC 4 cut(s) 6, 132, 204, 366
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 4 cut(s) 232, 660, 764, 902
Lsp1109I GCAGC 6 cut(s) 36, 271, 305, 427, 749, 959
LweI GCATC 5 cut(s) 19, 86, 201, 296, 700
MaeI CTAG 2 cut(s) 279, 482
MaeII ACGT 4 cut(s) 15, 868, 991, 1084
MaeIII GTNAC 2 cut(s) 16, 1052
MalI GATC 4 cut(s) 8, 134, 206, 368
MboI GATC 4 cut(s) 6, 132, 204, 366
MflI RGATCY 3 cut(s) 132, 204, 366
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 2 cut(s) 618, 837
MlyI GAGTC 3 cut(s) 94, 503, 581
MmeI TCCRAC 1 cut(s) 254
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 1 cut(s) 632
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 296, 950
MspCI CTTAAG 1 cut(s) 631
MspI CCGG 2 cut(s) 741, 909
MspR9I CCNGG 3 cut(s) 363, 910, 1096
MvaI CCWGG 2 cut(s) 363, 1096
NciI CCSGG 1 cut(s) 910
NcoI CCATGG 2 cut(s) 760, 1011
NdeI CATATG 1 cut(s) 604
NdeII GATC 4 cut(s) 6, 132, 204, 366
NlaIII CATG 7 cut(s) 181, 223, 241, 310, 324, 764, 1015
NlaIV GGNNCC 5 cut(s) 134, 368, 656, 904, 1034
NmeAIII GCCGAG 1 cut(s) 779
NsiI ATGCAT 1 cut(s) 79
PagI TCATGA 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 5 cut(s) 151, 372, 513, 724, 744
PflFI GACNNNGTC 1 cut(s) 782
PflMI CCANNNNNTGG 1 cut(s) 1071
PfoI TCCNGGA 1 cut(s) 908
PkrI GCNGC 7 cut(s) 51, 286, 295, 417, 488, 739, 949
PleI GAGTC 3 cut(s) 94, 502, 581
PpsI GAGTC 3 cut(s) 94, 502, 581
Ppu21I YACGTR 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 769
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 361, 1094
PspFI CCCAGC 2 cut(s) 440, 787
PspGI CCWGG 2 cut(s) 361, 1094
PspN4I GGNNCC 5 cut(s) 134, 368, 656, 904, 1034
PspPI GGNCC 3 cut(s) 359, 802, 1032
PstI CTGCAG 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 3 cut(s) 132, 204, 366
PsyI GACNNNGTC 1 cut(s) 782
PvuII CAGCTG 2 cut(s) 296, 950
RsaI GTAC 2 cut(s) 65, 628
RsaNI GTAC 2 cut(s) 64, 627
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 7 cut(s) 50, 285, 294, 416, 487, 738, 948
Sau3AI GATC 4 cut(s) 6, 132, 204, 366
Sau96I GGNCC 3 cut(s) 359, 802, 1032
SchI GAGTC 3 cut(s) 94, 503, 581
ScrFI CCNGG 3 cut(s) 363, 910, 1096
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 5 cut(s) 19, 86, 201, 296, 700
SfcI CTRYAG 3 cut(s) 291, 354, 465
SinI GGWCC 1 cut(s) 1032
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 2 cut(s) 618, 837
SsiI CCGC 1 cut(s) 487
SspMI CTAG 2 cut(s) 279, 482
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 3 cut(s) 361, 908, 1094
StyI CCWWGG 3 cut(s) 476, 760, 1011
TaaI ACNGT 3 cut(s) 190, 466, 626
TaiI ACGT 4 cut(s) 18, 871, 994, 1087
TaqI TCGA 3 cut(s) 209, 865, 1002
TaqII GACCGA 1 cut(s) 1020
TasI AATT 2 cut(s) 618, 837
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 5 cut(s) 151, 372, 513, 724, 744
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 5 cut(s) 469, 656, 880, 936, 1023
TseI GCWGC 6 cut(s) 49, 284, 293, 415, 737, 947
TspDTI ATGAA 2 cut(s) 309, 591
TspRI CASTG 5 cut(s) 469, 656, 880, 936, 1023
Tth111I GACNNNGTC 1 cut(s) 782
Van91I CCANNNNNTGG 1 cut(s) 1071
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 1032
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 1 cut(s) 837
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmiI GTMKAC 3 cut(s) 353, 390, 468
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 2 cut(s) 279, 482
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.