Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006477

Physical Location & Seq

Genomic Coordinates Forward (+)

21180137 .. 21185181

Gene Structure 5045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGGGAGATAACCAACGTCAGTGAGTATGAGGCAATTGCAAAGCAGAAACTGCCAAAGATGGTGTTTGACTATTATGCATCAGGAGCAGAGGACCAGTGGACTCTGGCTGAAAACAGAAATGCTTTCTCCAAGATTCTGTTTCGACCCCGTATTCTTATTGATGTAAGCAACATCGACATGACCACTACCGTTTTGGGCTTCAAAATTTCCATGCCAATCATGATTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACTGCACGAGCAGCATCAGCAGCAGGAACAATTATGACTTTATCATCATGGGCTACTTCAAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGAATCCGTTTTTTCCAGCTCTATGTATACAAGGACAGGCATGTAGTTGCTCAGCTAGTGAGAAGAGCTGAAAGAGCTGGGTTCAAGGCAATTGCTCTTACAGTTGATACTCCAAGGCTGGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTCTACCTCCATTTCTGACACTGAAGAACTTTGAAGGTTTGGACCTTGGAAAGATGGACAAAGCTAATGACTCCGGACTTGCTTCATATGTTGCTGGTCAAATCGATCGTTCTCTTAGCTGGAAGGTATGTCCACTGAGAGCAAATCTTGAGATACATGAACTCGGAAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

9.12

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	14 - 215	5.5e-67	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14415 AT3G14415 AT3G14415 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420
fragaria_vesca	FvH4_3g16520
malus_domestica	MD05G1209300.v1.1 MD10G1195700.v1.1
prunus_persica	Prupe.4G148200_v2.0.a1 Prupe.4G148200_v2.0.a1
pyrus_communis	pycom05g19540 pycom10g16930
rosa_chinensis	RchiOBHm_Chr5g0027571
rosa_laevigata	RLG00000033027
rosa_multiflora	Rmu_sc0001647.1_g000002 Rmu_sc0011056.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051970
rosa_rugosa	Rorug05G0099800 Rorug05G0099800
rosa_samantha	Rh5AG194000 Rh5BG192000
rosa_wichuraiana	Rw5G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	282, 563
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	205, 336, 344, 357, 451, 554
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	7 cut(s)	385, 421, 434, 443, 500, 584, 639
AluI	AGCT	7 cut(s)	385, 421, 434, 443, 500, 584, 639
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	593
ApeKI	GCWGC	2 cut(s)	287, 296
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	94, 362, 562
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	94, 362, 562
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	299, 308
BccI	CCATC	2 cut(s)	55, 568
BciT130I	CCWGG	1 cut(s)	366
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	2 cut(s)	288, 297
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	289, 298
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	3 cut(s)	94, 362, 562
BmgT120I	GGNCC	3 cut(s)	94, 362, 562
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	89, 299
Bpu1102I	GCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	689
Bsa29I	ATCGAT	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	479, 565
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	97, 364
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	479, 565
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	431, 647
BseNI	ACTGG	2 cut(s)	97, 364
BseXI	GCAGC	2 cut(s)	299, 308
BseYI	CCCAGC	2 cut(s)	443, 484
BsgI	GTGCAG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	628
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	485
Bsp13I	TCCGGA	1 cut(s)	593
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	1 cut(s)	417
BspCNI	CTCAG	2 cut(s)	430, 648
BspDI	ATCGAT	1 cut(s)	624
BspEI	TCCGGA	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	97, 364
BssECI	CCNNGG	2 cut(s)	479, 565
BssMI	GATC	1 cut(s)	625
BssNAI	GTATAC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	479, 565
Bst1107I	GTATAC	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	193, 469
Bst6I	CTCTTC	2 cut(s)	339, 424
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	417, 635, 656
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	625
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 86, 236, 287, 293, 296, 440
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	299, 308
BstZ17I	GTATAC	1 cut(s)	394
Bsu15I	ATCGAT	1 cut(s)	624
BsuTUI	ATCGAT	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	4 cut(s)	28, 104, 539, 653
CaiI	CAGNNNCTG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	94, 362, 562
ClaI	ATCGAT	1 cut(s)	624
CviAII	CATG	8 cut(s)	181, 214, 223, 241, 324, 407, 677, 693
DdeI	CTNAG	3 cut(s)	417, 635, 656
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
Eam1104I	CTCTTC	2 cut(s)	339, 424
EarI	CTCTTC	2 cut(s)	339, 424
Eco130I	CCWWGG	2 cut(s)	479, 565
Eco47I	GGWCC	3 cut(s)	94, 362, 562
Eco57I	CTGAAG	2 cut(s)	282, 563
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	479, 565
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	479, 565
FaeI	CATG	8 cut(s)	184, 217, 226, 244, 327, 410, 680, 696
FatI	CATG	8 cut(s)	180, 213, 222, 240, 323, 406, 676, 692
FauNDI	CATATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	288, 297
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	288, 297
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	2 cut(s)	288, 297
GsaI	CCCAGC	2 cut(s)	447, 488
HapII	CCGG	1 cut(s)	594
Hin1II	CATG	8 cut(s)	184, 217, 226, 244, 327, 410, 680, 696
HinfI	GANTC	4 cut(s)	103, 136, 369, 590
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	102, 394, 653
Hpy188I	TCNGA	2 cut(s)	537, 686
Hpy188III	TCNNGA	6 cut(s)	84, 223, 260, 508, 594, 668
Hpy8I	GTNNAC	3 cut(s)	102, 394, 653
HpyAV	CCTTC	3 cut(s)	257, 548, 637
HpyCH4III	ACNGT	2 cut(s)	193, 469
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	41, 80, 244, 281
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 86, 236, 287, 293, 296, 440
HpyF3I	CTNAG	3 cut(s)	417, 635, 656
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	8 cut(s)	184, 217, 226, 244, 327, 410, 680, 696
Kpn2I	TCCGGA	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	625
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	2 cut(s)	299, 308
LweI	GCATC	2 cut(s)	89, 299
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	18
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	3 cut(s)	356, 441, 556
MfeI	CAATTG	2 cut(s)	36, 456
MluCI	AATT	4 cut(s)	36, 207, 306, 456
MlyI	GAGTC	2 cut(s)	97, 584
MnlI	CCTC	4 cut(s)	25, 85, 340, 537
Mph1103I	ATGCAT	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	2 cut(s)	36, 456
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	52, 86, 236, 287, 293, 296, 440
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	8 cut(s)	184, 217, 226, 244, 327, 410, 680, 696
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	136, 369
PkrI	GCNGC	2 cut(s)	289, 298
Ple19I	CGATCG	1 cut(s)	628
PleI	GAGTC	2 cut(s)	97, 584
PpsI	GAGTC	2 cut(s)	97, 584
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	2 cut(s)	443, 484
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	94, 362, 562
PstNI	CAGNNNCTG	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	424
SatI	GCNGC	2 cut(s)	288, 297
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	3 cut(s)	94, 362, 562
SchI	GAGTC	2 cut(s)	97, 584
ScrFI	CCNGG	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	89, 299
SinI	GGWCC	3 cut(s)	94, 362, 562
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	4 cut(s)	36, 207, 306, 456
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	479, 565
TaaI	ACNGT	2 cut(s)	193, 469
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	145, 177, 624
TasI	AATT	4 cut(s)	36, 207, 306, 456
TfiI	GAWTC	2 cut(s)	136, 369
TscAI	CASTG	4 cut(s)	28, 104, 546, 660
TseI	GCWGC	2 cut(s)	287, 296
TspDTI	ATGAA	2 cut(s)	594, 693
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	28, 104, 546, 660
VpaK11BI	GGWCC	3 cut(s)	94, 362, 562
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 247
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.