pycom10g16930

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
20127369 .. 20130597
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g16930.4

Sequence Viewer

Length: 1107 bp
ATGGAGATAACCAACGTCAGCGAGTATGAGGCCATCGCGAAGGAGAAGTTGCCAAAGATGGTCTATGACTACTACGCATCAGGAGCAGAGGACCAGTGGACTCTTGCTGAAAACAGAAATGCTTTCTCCAGAATTCTGTTTCGACCCCGTATTCTCATTGATGTTAGCCACATAGACATGACCACCACTGTTTTGGGCTCGATCTCAATGCCAATCATGATTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACTGCGAGGGCAGCATCAGCAGCTGGAACAATCATGACCTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGAATCCGTTTCTTCCAGCTCTATGTCTACAAGGACAGGCATGTGGTTGCTCAGCTGGTCAGAAGAGCCGAAAGGGCTGGGTTCAAGGCTATTGCTCTTACAGTTGATACCCCAAGGCTCGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTTTGCCTCCGTTTTTGACACTGAAGAACTTTGAGGGTTTGGACCTCGGAAAGATGGACAAAGCTGCTGACTCTGGACTTGCTTCATACGTTGCTGGTCAAATTGATCGCTCTCTTAGCTGGAAGGATGTGCAGTGGCTTCAGACAATCACTTCACTGCCTATCCTAGTGAAGGGTGTTCTCACTGCTGAAGATGCAAGGATTGCAGTACAAGCCGGAGCAGCTGGGATTATTGTGTCCAACCATGGAGCTCGCCAACTTGATTACGTCCCTTCGACTATCATGGCCCTAGAAGAGGTTGTTAAAGGTGCACAAGGACGCATTCCTGTTTTCTTGGATGGTGGTGTTCGTCGTGGAACAGATGTCTTCAAAGCATTAGCATTGGGTGCCTCTGGCATATTTATTGGGCGCCCTGTGGTGTTCTCTTTGGCTGCTGAAGGAGAGGCTGGCATTAAAAAGGTACTGCAAATGCTGCGTGAAGAGTTTGAGCTAACCATGGCATTAAGTGGATGCCGTTCACTCAAAGAGATCACCCGCAATCACATTGTGACTGACTGGGACGTTCCTCGCCCTCGCCATCACCCCAGGTTATAG

Protein Analysis

369

Amino Acids

40.42

Weight (kDa)

9.02

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 899, 921
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 38
AciI CCGC 1 cut(s) 1048
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 5 cut(s) 276, 557, 638, 723, 969
AcyI GRCGYC 1 cut(s) 922
AdeI CACNNNGTG 1 cut(s) 1060
AfaI GTAC 2 cut(s) 723, 975
AfiI CCNNNNNNNGG 3 cut(s) 479, 685, 808
AgsI TTSAA 5 cut(s) 330, 338, 351, 445, 883
AjnI CCWGG 2 cut(s) 358, 1097
AluBI AGCT 9 cut(s) 293, 379, 415, 494, 578, 633, 737, 764, 1003
AluI AGCT 9 cut(s) 293, 379, 415, 494, 578, 633, 737, 764, 1003
Alw21I GWGCWC 2 cut(s) 766, 826
Alw44I GTGCAC 1 cut(s) 822
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 2 cut(s) 30, 798
ApaLI GTGCAC 1 cut(s) 822
ApeKI GCWGC 6 cut(s) 281, 290, 578, 734, 944, 985
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 4 cut(s) 91, 356, 556, 799
AsuHPI GGTGA 3 cut(s) 272, 1036, 1085
AvaII GGWCC 3 cut(s) 91, 356, 556
BaeGI GKGCMC 1 cut(s) 826
BanI GGYRCC 2 cut(s) 899, 921
BanII GRGCYC 2 cut(s) 200, 766
BbsI GAAGAC 2 cut(s) 306, 871
Bbv12I GWGCWC 2 cut(s) 766, 826
BbvI GCAGC 6 cut(s) 293, 302, 565, 746, 931, 972
BccI CCATC 5 cut(s) 41, 52, 562, 845, 1098
BceAI ACGGC 1 cut(s) 1011
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 2 cut(s) 360, 1099
BfaI CTAG 2 cut(s) 680, 803
BfoI RGCGCY 1 cut(s) 925
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 6 cut(s) 282, 291, 579, 735, 945, 986
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 6 cut(s) 283, 292, 580, 736, 946, 987
Bme1390I CCNGG 2 cut(s) 360, 1099
Bme18I GGWCC 3 cut(s) 91, 356, 556
BmgT120I GGNCC 4 cut(s) 91, 356, 556, 799
BmiI GGNNCC 2 cut(s) 901, 923
BmrFI CCNGG 2 cut(s) 360, 1099
BmrI ACTGGG 1 cut(s) 1078
BmsI GCATC 4 cut(s) 86, 293, 697, 1013
BmuI ACTGGG 1 cut(s) 1078
BpiI GAAGAC 2 cut(s) 306, 871
BpmI CTGGAG 1 cut(s) 112
Bpu1102I GCTNAGC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 922
BsaJI CCNNGG 5 cut(s) 473, 559, 757, 1008, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 3 cut(s) 479, 685, 808
Bse1I ACTGG 3 cut(s) 94, 358, 1073
BseBI CCWGG 2 cut(s) 360, 1099
BseDI CCNNGG 5 cut(s) 473, 559, 757, 1008, 1097
BseGI GGATG 4 cut(s) 250, 646, 856, 1028
BseLI CCNNNNNNNGG 3 cut(s) 479, 685, 808
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 3 cut(s) 94, 358, 1073
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 6 cut(s) 293, 302, 565, 746, 931, 972
BseYI CCCAGC 2 cut(s) 437, 737
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 2 cut(s) 32, 800
BshNI GGYRCC 2 cut(s) 899, 921
BsiEI CGRYCG 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 766, 826
BsiSI CCGG 1 cut(s) 729
BslFI GGGAC 2 cut(s) 767, 1085
BslI CCNNNNNNNGG 3 cut(s) 479, 685, 808
BsmFI GGGAC 2 cut(s) 767, 1085
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 2 cut(s) 32, 800
Bsp1286I GDGCHC 3 cut(s) 200, 766, 826
Bsp143I GATC 3 cut(s) 201, 619, 1041
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 2 cut(s) 757, 1008
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 1 cut(s) 1048
BspANI GGCC 2 cut(s) 32, 800
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 2 cut(s) 216, 303
BspLI GGNNCC 2 cut(s) 901, 923
BspQI GCTCTTC 1 cut(s) 418
BspT107I GGYRCC 2 cut(s) 899, 921
BsrI ACTGG 3 cut(s) 94, 358, 1073
BssECI CCNNGG 5 cut(s) 473, 559, 757, 1008, 1097
BssMI GATC 3 cut(s) 201, 619, 1041
BssNI GRCGYC 1 cut(s) 922
BssT1I CCWWGG 3 cut(s) 473, 757, 1008
Bst2UI CCWGG 2 cut(s) 360, 1099
Bst4CI ACNGT 2 cut(s) 190, 463
Bst6I CTCTTC 4 cut(s) 333, 418, 801, 987
BstACI GRCGYC 1 cut(s) 922
BstAPI GCANNNNNTGC 3 cut(s) 716, 899, 985
BstC8I GCNNGC 2 cut(s) 766, 961
BstDEI CTNAG 2 cut(s) 411, 629
BstDSI CCRYGG 2 cut(s) 757, 1008
BstENI CCTNNNNNAGG 2 cut(s) 683, 806
BstF5I GGATG 4 cut(s) 250, 646, 856, 1028
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 925
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 3 cut(s) 204, 622, 1044
BstMBI GATC 3 cut(s) 201, 619, 1041
BstMCI CGRYCG 1 cut(s) 484
BstNI CCWGG 2 cut(s) 360, 1099
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 2 cut(s) 358, 1097
BstSLI GKGCMC 1 cut(s) 826
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 6 cut(s) 293, 302, 565, 746, 931, 972
BstV2I GAAGAC 2 cut(s) 306, 871
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 32, 800
BtgI CCRYGG 2 cut(s) 757, 1008
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 4 cut(s) 250, 646, 856, 1028
BtsI GCAGTG 3 cut(s) 653, 668, 696
BtsIMutI CAGTG 6 cut(s) 101, 186, 533, 653, 668, 696
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 766, 961
CaiI CAGNNNCTG 1 cut(s) 293
CciI TCATGA 2 cut(s) 216, 303
CfoI GCGC 1 cut(s) 924
Cfr13I GGNCC 4 cut(s) 91, 356, 556, 799
CseI GACGC 1 cut(s) 840
Csp6I GTAC 2 cut(s) 722, 974
CviAII CATG 9 cut(s) 178, 217, 235, 304, 318, 401, 758, 796, 1009
CviQI GTAC 2 cut(s) 722, 974
DdeI CTNAG 2 cut(s) 411, 629
DinI GGCGCC 1 cut(s) 923
DpnI GATC 3 cut(s) 203, 621, 1043
DpnII GATC 3 cut(s) 201, 619, 1041
DraIII CACNNNGTG 1 cut(s) 1060
Eam1104I CTCTTC 4 cut(s) 333, 418, 801, 987
EarI CTCTTC 4 cut(s) 333, 418, 801, 987
Ecl136II GAGCTC 1 cut(s) 764
Eco130I CCWWGG 3 cut(s) 473, 757, 1008
Eco24I GRGCYC 2 cut(s) 200, 766
Eco47I GGWCC 3 cut(s) 91, 356, 556
Eco53kI GAGCTC 1 cut(s) 764
Eco57I CTGAAG 5 cut(s) 276, 557, 638, 723, 969
EcoICRI GAGCTC 1 cut(s) 764
EcoNI CCTNNNNNAGG 2 cut(s) 683, 806
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 358, 1097
EcoT14I CCWWGG 3 cut(s) 473, 757, 1008
EcoT38I GRGCYC 2 cut(s) 200, 766
EgeI GGCGCC 1 cut(s) 923
EheI GGCGCC 1 cut(s) 923
ErhI CCWWGG 3 cut(s) 473, 757, 1008
FaeI CATG 9 cut(s) 181, 220, 238, 307, 321, 404, 761, 799, 1012
FaqI GGGAC 2 cut(s) 767, 1085
FatI CATG 9 cut(s) 177, 216, 234, 303, 317, 400, 757, 795, 1008
FauI CCCGC 1 cut(s) 1055
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 6 cut(s) 282, 291, 579, 735, 945, 986
FokI GGATG 4 cut(s) 237, 653, 863, 1035
FriOI GRGCYC 2 cut(s) 200, 766
Fsp4HI GCNGC 6 cut(s) 282, 291, 579, 735, 945, 986
FspBI CTAG 2 cut(s) 680, 803
GlaI GCGC 1 cut(s) 923
GluI GCNGC 6 cut(s) 282, 291, 579, 735, 945, 986
GsaI CCCAGC 2 cut(s) 441, 741
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 925
HaeIII GGCC 2 cut(s) 32, 800
HapII CCGG 1 cut(s) 729
HgaI GACGC 1 cut(s) 840
HhaI GCGC 1 cut(s) 924
Hin1I GRCGYC 1 cut(s) 922
Hin1II CATG 9 cut(s) 181, 220, 238, 307, 321, 404, 761, 799, 1012
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HinfI GANTC 3 cut(s) 100, 363, 584
HpaII CCGG 1 cut(s) 729
HphI GGTGA 3 cut(s) 272, 1036, 1085
Hpy166II GTNNAC 4 cut(s) 99, 388, 824, 1031
Hpy188I TCNGA 3 cut(s) 422, 563, 657
Hpy188III TCNNGA 8 cut(s) 37, 81, 129, 217, 254, 304, 502, 588
Hpy8I GTNNAC 4 cut(s) 99, 388, 824, 1031
Hpy99I CGWCG 1 cut(s) 867
HpyAV CCTTC 6 cut(s) 34, 251, 631, 679, 795, 944
HpyCH4III ACNGT 2 cut(s) 190, 463
HpyCH4IV ACGT 4 cut(s) 15, 603, 780, 1074
HpyCH4V TGCA 6 cut(s) 238, 646, 710, 719, 824, 979
HpyF3I CTNAG 2 cut(s) 411, 629
HpySE526I ACGT 4 cut(s) 15, 603, 780, 1074
Hsp92I GRCGYC 1 cut(s) 922
Hsp92II CATG 9 cut(s) 181, 220, 238, 307, 321, 404, 761, 799, 1012
HspAI GCGC 1 cut(s) 922
KasI GGCGCC 1 cut(s) 921
Kzo9I GATC 3 cut(s) 201, 619, 1041
LguI GCTCTTC 1 cut(s) 418
LmnI GCTCC 3 cut(s) 83, 731, 761
Lsp1109I GCAGC 6 cut(s) 293, 302, 565, 746, 931, 972
LweI GCATC 4 cut(s) 86, 293, 697, 1013
MaeI CTAG 2 cut(s) 680, 803
MaeII ACGT 4 cut(s) 15, 603, 780, 1074
MaeIII GTNAC 1 cut(s) 1060
MalI GATC 3 cut(s) 203, 621, 1043
MboI GATC 3 cut(s) 201, 619, 1041
MboII GAAGA 9 cut(s) 306, 350, 364, 435, 550, 716, 818, 871, 1004
MhlI GDGCHC 3 cut(s) 200, 766, 826
MluCI AATT 2 cut(s) 132, 615
Mly113I GGCGCC 1 cut(s) 922
MlyI GAGTC 2 cut(s) 94, 578
MmeI TCCRAC 1 cut(s) 777
MseI TTAA 3 cut(s) 816, 966, 1016
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 3 cut(s) 293, 415, 737
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 2 cut(s) 360, 1099
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 2 cut(s) 360, 1099
MvnI CGCG 1 cut(s) 38
NarI GGCGCC 1 cut(s) 922
NcoI CCATGG 2 cut(s) 757, 1008
NdeII GATC 3 cut(s) 201, 619, 1041
NlaIII CATG 9 cut(s) 181, 220, 238, 307, 321, 404, 761, 799, 1012
NlaIV GGNNCC 2 cut(s) 901, 923
NmuCI GTSAC 1 cut(s) 1060
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 1 cut(s) 404
PagI TCATGA 2 cut(s) 216, 303
PciSI GCTCTTC 1 cut(s) 418
PctI GAATGC 1 cut(s) 834
PfeI GAWTC 1 cut(s) 363
PflFI GACNNNGTC 1 cut(s) 310
PkrI GCNGC 6 cut(s) 283, 292, 580, 736, 946, 987
PleI GAGTC 2 cut(s) 94, 578
PluTI GGCGCC 1 cut(s) 925
PpsI GAGTC 2 cut(s) 94, 578
Psp124BI GAGCTC 1 cut(s) 766
Psp6I CCWGG 2 cut(s) 358, 1097
PspFI CCCAGC 2 cut(s) 437, 737
PspGI CCWGG 2 cut(s) 358, 1097
PspN4I GGNNCC 2 cut(s) 901, 923
PspPI GGNCC 4 cut(s) 91, 356, 556, 799
PstNI CAGNNNCTG 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 310
PvuII CAGCTG 3 cut(s) 293, 415, 737
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 2 cut(s) 723, 975
RsaNI GTAC 2 cut(s) 722, 974
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 766
SapI GCTCTTC 1 cut(s) 418
SaqAI TTAA 3 cut(s) 816, 966, 1016
SatI GCNGC 6 cut(s) 282, 291, 579, 735, 945, 986
Sau3AI GATC 3 cut(s) 201, 619, 1041
Sau96I GGNCC 4 cut(s) 91, 356, 556, 799
SchI GAGTC 2 cut(s) 94, 578
ScrFI CCNGG 2 cut(s) 360, 1099
SduI GDGCHC 3 cut(s) 200, 766, 826
SfaNI GCATC 4 cut(s) 86, 293, 697, 1013
SfoI GGCGCC 1 cut(s) 923
SinI GGWCC 3 cut(s) 91, 356, 556
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 2 cut(s) 132, 615
SsiI CCGC 1 cut(s) 1048
SspDI GGCGCC 1 cut(s) 921
SspMI CTAG 2 cut(s) 680, 803
SstI GAGCTC 1 cut(s) 766
StyD4I CCNGG 2 cut(s) 358, 1097
StyI CCWWGG 3 cut(s) 473, 757, 1008
TaaI ACNGT 2 cut(s) 190, 463
TaiI ACGT 4 cut(s) 18, 606, 783, 1077
TaqI TCGA 3 cut(s) 142, 200, 788
TaqII GACCGA 1 cut(s) 470
TasI AATT 2 cut(s) 132, 615
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 3 cut(s) 816, 966, 1016
Tru9I TTAA 3 cut(s) 816, 966, 1016
TscAI CASTG 6 cut(s) 101, 193, 540, 653, 675, 703
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 6 cut(s) 281, 290, 578, 734, 944, 985
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 2 cut(s) 306, 588
TspGWI ACGGA 2 cut(s) 356, 513
TspRI CASTG 6 cut(s) 101, 193, 540, 653, 675, 703
Tth111I GACNNNGTC 1 cut(s) 310
VneI GTGCAC 1 cut(s) 822
VpaK11BI GGWCC 3 cut(s) 91, 356, 556
XagI CCTNNNNNAGG 2 cut(s) 683, 806
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 2 cut(s) 190, 241
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 2 cut(s) 680, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.