Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006477

Physical Location & Seq

Genomic Coordinates Forward (+)

22509849 .. 22514721

Gene Structure 4873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG194000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGGGAGATAACCAACGTCAGTGAGTATGAGGCAATTGCAAAGCAGAAACTGCCAAAGATGGTGTTTGACTATTATGCATCAGGAGCAGAGGACCAGTGGACTCTGGCTGAAAACAGAAATGCTTTCTCCAAGATTCTGTTTCGACCCCGTATTCTTATTGATGTAAGCAACATCGACATGACCACTACCGTTTTGGGCTTCAAAATTTCCATGCCAATCATGATTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACTGCACGAGCAGCATCAGCAGCAGGAACAATTATGACTTTATCATCATGGGCTACTTCAAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGAATCCGTTTTTTCCAGCTCTATGTATACAAGGACAGGCATGTAGTTGCTCAGCTAGTGAGAAGAGCTGAAAGAGCTGGGTTCAAGGCAATTGCTCTTACAGTTGATACTCCAAGGCTGGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTCTACCTCCATTTCTGACACTGAAGAACTTTGAAGGTTTGGACCTTGGAAAGATGGACCAAGCTAATGACTCCGGACTTGCTTCATATGTTGCTGGTCAAATCGATCGTTCTCTTAGCTGGAAGGATGTAAAGTGGCTCCAGACAATCACCAAACTTCCTATTCTGGTCAAGGGTGTTCTCACTGCTGAAGATGCAAGGCTTGCTGTACAATCTGGAGCAGCTGGAATCATTGTATCCAATCATGGTGCTCGACAACTTGATTATGTCCCATCGACTATCATGGCCTTAGAAGAGGTACAACAGCTTGGCTATAGATGGTTTTGGTGTATCCTCCTTGTAGATAGCATACAATTGTTCAATCCTAGTTTTTATAATGTTTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

302

Amino Acids

33.6

Weight (kDa)

8.51

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	14 - 275	2.1e-98	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14415 AT3G14415 AT3G14415 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420
fragaria_vesca	FvH4_3g16520
malus_domestica	MD05G1209300.v1.1 MD10G1195700.v1.1
prunus_persica	Prupe.4G148200_v2.0.a1 Prupe.4G148200_v2.0.a1
pyrus_communis	pycom05g19540 pycom10g16930
rosa_chinensis	RchiOBHm_Chr5g0027571
rosa_laevigata	RLG00000033027
rosa_multiflora	Rmu_sc0001647.1_g000002 Rmu_sc0011056.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051970
rosa_rugosa	Rorug05G0099800 Rorug05G0099800
rosa_samantha	Rh5AG194000 Rh5BG192000
rosa_wichuraiana	Rw5G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AccI	GTMKAC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	3 cut(s)	282, 563, 729
AfaI	GTAC	2 cut(s)	729, 819
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	7 cut(s)	205, 336, 344, 357, 451, 554, 880
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	9 cut(s)	385, 421, 434, 443, 500, 584, 639, 743, 826
AluI	AGCT	9 cut(s)	385, 421, 434, 443, 500, 584, 639, 743, 826
Alw21I	GWGCWC	1 cut(s)	772
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	3 cut(s)	287, 296, 740
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	4 cut(s)	94, 362, 562, 577
AsuHPI	GGTGA	2 cut(s)	278, 661
AvaII	GGWCC	4 cut(s)	94, 362, 562, 577
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	3 cut(s)	299, 308, 752
BccI	CCATC	4 cut(s)	55, 568, 799, 831
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	2 cut(s)	766, 860
BfaI	CTAG	2 cut(s)	422, 885
BfmI	CTRYAG	1 cut(s)	832
BfuI	GTATCC	2 cut(s)	766, 860
BisI	GCNGC	3 cut(s)	288, 297, 741
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	3 cut(s)	289, 298, 742
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	4 cut(s)	94, 362, 562, 577
BmgT120I	GGNCC	4 cut(s)	94, 362, 562, 577
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	89, 299, 703
BpmI	CTGGAG	2 cut(s)	644, 756
Bpu1102I	GCTNAGC	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	479, 565
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	97, 364
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	479, 565
BseGI	GGATG	2 cut(s)	256, 652
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	97, 364
BseXI	GCAGC	3 cut(s)	299, 308, 752
BseYI	CCCAGC	2 cut(s)	443, 484
BsgI	GTGCAG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	628
BshFI	GGCC	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp13I	TCCGGA	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	1 cut(s)	417
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	1 cut(s)	624
BspEI	TCCGGA	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	659
BspQI	GCTCTTC	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	97, 364
BssECI	CCNNGG	2 cut(s)	479, 565
BssMI	GATC	1 cut(s)	625
BssNAI	GTATAC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	479, 565
Bst1107I	GTATAC	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	193, 469
Bst6I	CTCTTC	3 cut(s)	339, 424, 807
BstAPI	GCANNNNNTGC	2 cut(s)	52, 722
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	3 cut(s)	417, 635, 808
BstF5I	GGATG	2 cut(s)	256, 652
BstKTI	GATC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	625
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 86, 236, 287, 293, 296, 440, 713, 722
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	832
BstV1I	GCAGC	3 cut(s)	299, 308, 752
BstZ17I	GTATAC	1 cut(s)	394
Bsu15I	ATCGAT	1 cut(s)	624
BsuI	GTATCC	2 cut(s)	766, 860
BsuRI	GGCC	1 cut(s)	806
BsuTUI	ATCGAT	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	256, 652
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	4 cut(s)	28, 104, 539, 702
Cac8I	GCNNGC	1 cut(s)	723
CaiI	CAGNNNCTG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	4 cut(s)	94, 362, 562, 577
ClaI	ATCGAT	1 cut(s)	624
Csp6I	GTAC	2 cut(s)	728, 818
CviAII	CATG	9 cut(s)	181, 214, 223, 241, 324, 407, 764, 802, 906
CviQI	GTAC	2 cut(s)	728, 818
DdeI	CTNAG	3 cut(s)	417, 635, 808
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
Eam1104I	CTCTTC	3 cut(s)	339, 424, 807
EarI	CTCTTC	3 cut(s)	339, 424, 807
Eco130I	CCWWGG	2 cut(s)	479, 565
Eco47I	GGWCC	4 cut(s)	94, 362, 562, 577
Eco57I	CTGAAG	3 cut(s)	282, 563, 729
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	479, 565
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	479, 565
FaeI	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 909
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	9 cut(s)	180, 213, 222, 240, 323, 406, 763, 801, 905
FauNDI	CATATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	288, 297, 741
FokI	GGATG	2 cut(s)	243, 659
Fsp4HI	GCNGC	3 cut(s)	288, 297, 741
FspBI	CTAG	2 cut(s)	422, 885
GluI	GCNGC	3 cut(s)	288, 297, 741
GsaI	CCCAGC	2 cut(s)	447, 488
GsuI	CTGGAG	2 cut(s)	644, 756
HaeIII	GGCC	1 cut(s)	806
HapII	CCGG	1 cut(s)	594
Hin1II	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 909
HinfI	GANTC	5 cut(s)	103, 136, 369, 590, 747
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	278, 661
Hpy166II	GTNNAC	2 cut(s)	102, 394
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	7 cut(s)	84, 223, 260, 508, 594, 661, 735
Hpy8I	GTNNAC	2 cut(s)	102, 394
HpyAV	CCTTC	3 cut(s)	257, 548, 637
HpyCH4III	ACNGT	2 cut(s)	193, 469
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	41, 80, 244, 281, 716
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 86, 236, 287, 293, 296, 440, 713, 722
HpyF3I	CTNAG	3 cut(s)	417, 635, 808
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 909
Kpn2I	TCCGGA	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	625
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	3 cut(s)	86, 663, 737
Lsp1109I	GCAGC	3 cut(s)	299, 308, 752
LweI	GCATC	3 cut(s)	89, 299, 703
MaeI	CTAG	2 cut(s)	422, 885
MaeII	ACGT	1 cut(s)	18
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	5 cut(s)	356, 441, 556, 722, 824
MfeI	CAATTG	3 cut(s)	36, 456, 872
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	5 cut(s)	36, 207, 306, 456, 872
MlyI	GAGTC	2 cut(s)	97, 584
MnlI	CCTC	6 cut(s)	25, 85, 340, 537, 808, 863
Mph1103I	ATGCAT	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	3 cut(s)	36, 456, 872
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	9 cut(s)	52, 86, 236, 287, 293, 296, 440, 713, 722
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 909
NlaIV	GGNNCC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	136, 369, 747
PkrI	GCNGC	3 cut(s)	289, 298, 742
Ple19I	CGATCG	1 cut(s)	628
PleI	GAGTC	2 cut(s)	97, 584
PpsI	GAGTC	2 cut(s)	97, 584
PsiI	TTATAA	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	2 cut(s)	443, 484
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	4 cut(s)	94, 362, 562, 577
PstNI	CAGNNNCTG	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	729, 819
RsaNI	GTAC	2 cut(s)	728, 818
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	424
SatI	GCNGC	3 cut(s)	288, 297, 741
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	4 cut(s)	94, 362, 562, 577
SchI	GAGTC	2 cut(s)	97, 584
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	3 cut(s)	89, 299, 703
SfcI	CTRYAG	1 cut(s)	832
SinI	GGWCC	4 cut(s)	94, 362, 562, 577
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	36, 207, 306, 456, 872
SspMI	CTAG	2 cut(s)	422, 885
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	479, 565
TaaI	ACNGT	2 cut(s)	193, 469
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	145, 177, 624, 772, 794
TasI	AATT	5 cut(s)	36, 207, 306, 456, 872
TatI	WGTACW	1 cut(s)	727
TfiI	GAWTC	3 cut(s)	136, 369, 747
TscAI	CASTG	4 cut(s)	28, 104, 546, 709
TseI	GCWGC	3 cut(s)	287, 296, 740
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	28, 104, 546, 709
VpaK11BI	GGWCC	4 cut(s)	94, 362, 562, 577
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 247
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	2 cut(s)	422, 885
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.