Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006477

Physical Location & Seq

Genomic Coordinates Forward (+)

22361738 .. 22365884

Gene Structure 4147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGGGAGATAACCAACGTCAGTGAGTATGAGGCAATTGCAAAGCAGAAATTGCCAAAGATGGTGTTTGACTATTATGCATCAGGAGCGGAGGACCAGTGGACTCTGGCTGAAAACAGAAATGCTTTCTCCAAGATTCTGTTTCGACCCCGTATTCTTATTGATGTAAGCAACATCGACATGAACACTACCGTTTTGGGCTTCAAAATTTCCATGCCAATCATGATTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACTGCACGAGCAGCATCAGCAGCGGGAACGATTATGACTTTATCATCATGGGCTACTTCAAGTGTTGAAGAGGTCGCTTCAACTGGACCTGGAATCCGTTTTTTCCAGCTCTATGTATACAAGGACAGGCATGTAGTTGCTCAACTAGTGAGAAGAGCTGAAAGGGCTGGGTTCAAGGCTATTGCTCTTACAGTTGATACTCCAAGGCTGGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTTTACCTCCATTTCTGACACTGAAGAACTTTGAAGGTTTGGACCTTGGAAAGATGGACAAAGCTAATGACTCCGGACTTGCTTCATACGTTGCTGGTCAAATTGATCGTTCTCTTAGCTGGAAGGATGTAAAGTGGCTTCAGACAATCACCAAACTTCCTATTCTGGTCAAGGGTGTTCTCACTGCTGAAGATGCAAGGCTTGCTGTACAATCTGGAGCAGCTGGGATCATTGTATCCAATCATGGTGCTCGACAACTTGACTATGTCCCTTCAACTATCATGGCCTTAGAAGAGGTTGTTAAAGCTGCGCAAGGACGTGTTCCTGTTTTCTTGGATGGTGGTGTTCGTCGTGGAACAGATGTCTTTAAAGCATTAGCATTGGGTGCCTCTGGAATATTTATTGGTCGCCCTGTAGTGTTCTCTTTGGCTGCTGAAGGAGAGGCTGGCATTAGAAAAGTACTCCAAATGTTGCGTGAGGAGTTTGAGCTAACCATGGCATTAAGTGGATGCCGTTCACTCAAAGAAATCACCCGCAATCACATTGTGACTGAGTGGGACGCTCCTCGCCCAGTACCCAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

369

Amino Acids

40.39

Weight (kDa)

9.36

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	14 - 356	6e-139	FMN-dependent dehydrogenase
IMPDH	PF00478	266 - 312	5.9e-06	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14415 AT3G14415 AT3G14415 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420
fragaria_vesca	FvH4_3g16520
malus_domestica	MD05G1209300.v1.1 MD10G1195700.v1.1
prunus_persica	Prupe.4G148200_v2.0.a1 Prupe.4G148200_v2.0.a1
pyrus_communis	pycom05g19540 pycom10g16930
rosa_chinensis	RchiOBHm_Chr5g0027571
rosa_laevigata	RLG00000033027
rosa_multiflora	Rmu_sc0001647.1_g000002 Rmu_sc0011056.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051970
rosa_rugosa	Rorug05G0099800 Rorug05G0099800
rosa_samantha	Rh5AG194000 Rh5BG192000
rosa_wichuraiana	Rw5G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	905
AccBSI	CCGCTC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	593
AciI	CCGC	3 cut(s)	89, 299, 1054
AclWI	GGATC	1 cut(s)	755
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	5 cut(s)	282, 563, 644, 729, 975
AdeI	CACNNNGTG	1 cut(s)	1066
AfaI	GTAC	3 cut(s)	729, 981, 1095
AfiI	CCNNNNNNNGG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	7 cut(s)	205, 336, 344, 357, 451, 554, 795
AhlI	ACTAGT	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	2 cut(s)	364, 1097
AluBI	AGCT	8 cut(s)	385, 434, 500, 584, 639, 743, 827, 1009
AluI	AGCT	8 cut(s)	385, 434, 500, 584, 639, 743, 827, 1009
Alw21I	GWGCWC	1 cut(s)	772
AlwI	GGATC	1 cut(s)	755
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	5 cut(s)	287, 296, 740, 827, 950
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	3 cut(s)	94, 362, 562
AsuHPI	GGTGA	3 cut(s)	278, 661, 1042
AvaII	GGWCC	3 cut(s)	94, 362, 562
BanI	GGYRCC	1 cut(s)	905
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	5 cut(s)	299, 308, 752, 814, 937
BccI	CCATC	3 cut(s)	55, 568, 851
BceAI	ACGGC	1 cut(s)	1017
BciT130I	CCWGG	2 cut(s)	366, 1099
BciVI	GTATCC	1 cut(s)	766
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
BlsI	GCNGC	5 cut(s)	289, 298, 742, 829, 952
BmcAI	AGTACT	1 cut(s)	981
Bme1390I	CCNGG	2 cut(s)	366, 1099
Bme18I	GGWCC	3 cut(s)	94, 362, 562
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	3 cut(s)	94, 362, 562
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	2 cut(s)	366, 1099
BmrI	ACTGGG	1 cut(s)	1085
BmsI	GCATC	4 cut(s)	89, 299, 703, 1019
BmuI	ACTGGG	1 cut(s)	1085
BpmI	CTGGAG	1 cut(s)	756
BsaJI	CCNNGG	4 cut(s)	479, 565, 1014, 1097
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	97, 364, 1091
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	366, 1099
BseDI	CCNNGG	4 cut(s)	479, 565, 1014, 1097
BseGI	GGATG	4 cut(s)	256, 652, 862, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	1062
BseNI	ACTGG	3 cut(s)	97, 364, 1091
BseRI	GAGGAG	2 cut(s)	1013, 1074
BseXI	GCAGC	5 cut(s)	299, 308, 752, 814, 937
BseYI	CCCAGC	3 cut(s)	443, 484, 743
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	806
BshNI	GGYRCC	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	2 cut(s)	773, 1091
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	773, 1091
BsnI	GGCC	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp13I	TCCGGA	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	2 cut(s)	625, 747
Bsp19I	CCATGG	1 cut(s)	1014
BspACI	CCGC	3 cut(s)	89, 299, 1054
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	1 cut(s)	1063
BspEI	TCCGGA	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	907
BspPI	GGATC	1 cut(s)	755
BspQI	GCTCTTC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	97, 364, 1091
BssECI	CCNNGG	4 cut(s)	479, 565, 1014, 1097
BssMI	GATC	2 cut(s)	625, 747
BssNAI	GTATAC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	3 cut(s)	479, 565, 1014
Bst1107I	GTATAC	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	366, 1099
Bst4CI	ACNGT	2 cut(s)	193, 469
Bst6I	CTCTTC	3 cut(s)	339, 424, 807
BstAPI	GCANNNNNTGC	3 cut(s)	52, 722, 905
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	723, 967
BstDEI	CTNAG	3 cut(s)	635, 808, 1071
BstDSI	CCRYGG	1 cut(s)	1014
BstF5I	GGATG	4 cut(s)	256, 652, 862, 1034
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	2 cut(s)	628, 750
BstMBI	GATC	2 cut(s)	625, 747
BstNI	CCWGG	2 cut(s)	366, 1099
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	364, 1097
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	299, 308, 752, 814, 937
BstZ17I	GTATAC	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	1014
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	4 cut(s)	256, 652, 862, 1034
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	4 cut(s)	28, 104, 539, 702
Cac8I	GCNNGC	2 cut(s)	723, 967
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	832
Cfr13I	GGNCC	3 cut(s)	94, 362, 562
CseI	GACGC	1 cut(s)	1088
Csp6I	GTAC	3 cut(s)	728, 980, 1094
CviAII	CATG	9 cut(s)	181, 214, 223, 241, 324, 407, 764, 802, 1015
CviQI	GTAC	3 cut(s)	728, 980, 1094
DdeI	CTNAG	3 cut(s)	635, 808, 1071
DpnI	GATC	2 cut(s)	627, 749
DpnII	GATC	2 cut(s)	625, 747
DraI	TTTAAA	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	1066
Eam1104I	CTCTTC	3 cut(s)	339, 424, 807
EarI	CTCTTC	3 cut(s)	339, 424, 807
Eco130I	CCWWGG	3 cut(s)	479, 565, 1014
Eco47I	GGWCC	3 cut(s)	94, 362, 562
Eco57I	CTGAAG	5 cut(s)	282, 563, 644, 729, 975
EcoRII	CCWGG	2 cut(s)	364, 1097
EcoT14I	CCWWGG	3 cut(s)	479, 565, 1014
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	3 cut(s)	479, 565, 1014
FaeI	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
FaqI	GGGAC	2 cut(s)	773, 1091
FatI	CATG	9 cut(s)	180, 213, 222, 240, 323, 406, 763, 801, 1014
FauI	CCCGC	2 cut(s)	292, 1061
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
FokI	GGATG	4 cut(s)	243, 659, 869, 1041
Fsp4HI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
FspBI	CTAG	1 cut(s)	422
FspI	TGCGCA	1 cut(s)	831
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
GsaI	CCCAGC	3 cut(s)	447, 488, 747
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	806
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	1 cut(s)	1088
HhaI	GCGC	1 cut(s)	832
Hin1II	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HinfI	GANTC	4 cut(s)	103, 136, 369, 590
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	3 cut(s)	278, 661, 1042
Hpy166II	GTNNAC	3 cut(s)	102, 394, 1037
Hpy188I	TCNGA	2 cut(s)	537, 663
Hpy188III	TCNNGA	7 cut(s)	84, 223, 260, 508, 594, 735, 912
Hpy8I	GTNNAC	3 cut(s)	102, 394, 1037
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	5 cut(s)	257, 548, 637, 801, 950
HpyCH4III	ACNGT	2 cut(s)	193, 469
HpyCH4IV	ACGT	3 cut(s)	18, 609, 838
HpyCH4V	TGCA	5 cut(s)	41, 80, 244, 281, 716
HpyF3I	CTNAG	3 cut(s)	635, 808, 1071
HpySE526I	ACGT	3 cut(s)	18, 609, 838
Hsp92II	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
HspAI	GCGC	1 cut(s)	830
Kpn2I	TCCGGA	1 cut(s)	593
Kzo9I	GATC	2 cut(s)	625, 747
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	3 cut(s)	86, 737, 1087
Lsp1109I	GCAGC	5 cut(s)	299, 308, 752, 814, 937
LweI	GCATC	4 cut(s)	89, 299, 703, 1019
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	3 cut(s)	18, 609, 838
MaeIII	GTNAC	1 cut(s)	1066
MalI	GATC	2 cut(s)	627, 749
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	2 cut(s)	625, 747
MboII	GAAGA	5 cut(s)	356, 441, 556, 722, 824
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	4 cut(s)	36, 50, 207, 621
MlyI	GAGTC	2 cut(s)	97, 584
MnlI	CCTC	9 cut(s)	25, 85, 340, 537, 808, 919, 955, 991, 1095
Mph1103I	ATGCAT	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	593
MseI	TTAA	3 cut(s)	822, 888, 1022
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	299, 743
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	2 cut(s)	366, 1099
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	2 cut(s)	366, 1099
NcoI	CCATGG	1 cut(s)	1014
NdeII	GATC	2 cut(s)	625, 747
NlaIII	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	1066
NsbI	TGCGCA	1 cut(s)	831
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	136, 369
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	5 cut(s)	289, 298, 742, 829, 952
PleI	GAGTC	2 cut(s)	97, 584
PpsI	GAGTC	2 cut(s)	97, 584
Psp6I	CCWGG	2 cut(s)	364, 1097
PspFI	CCCAGC	3 cut(s)	443, 484, 743
PspGI	CCWGG	2 cut(s)	364, 1097
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	3 cut(s)	94, 362, 562
PsyI	GACNNNGTC	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	3 cut(s)	729, 981, 1095
RsaNI	GTAC	3 cut(s)	728, 980, 1094
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	822, 888, 1022
SatI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
Sau3AI	GATC	2 cut(s)	625, 747
Sau96I	GGNCC	3 cut(s)	94, 362, 562
ScaI	AGTACT	1 cut(s)	981
SchI	GAGTC	2 cut(s)	97, 584
ScrFI	CCNGG	2 cut(s)	366, 1099
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	4 cut(s)	89, 299, 703, 1019
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	3 cut(s)	94, 362, 562
SmiMI	CAYNNNNRTG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	4 cut(s)	36, 50, 207, 621
SsiI	CCGC	3 cut(s)	89, 299, 1054
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	364, 1097
StyI	CCWWGG	3 cut(s)	479, 565, 1014
TaaI	ACNGT	2 cut(s)	193, 469
TaiI	ACGT	3 cut(s)	21, 612, 841
TaqI	TCGA	3 cut(s)	145, 177, 772
TasI	AATT	4 cut(s)	36, 50, 207, 621
TatI	WGTACW	2 cut(s)	727, 979
TfiI	GAWTC	2 cut(s)	136, 369
Tru1I	TTAA	3 cut(s)	822, 888, 1022
Tru9I	TTAA	3 cut(s)	822, 888, 1022
TscAI	CASTG	4 cut(s)	28, 104, 546, 709
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	5 cut(s)	287, 296, 740, 827, 950
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	2 cut(s)	197, 594
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	28, 104, 546, 709
Tth111I	GACNNNGTC	1 cut(s)	785
VpaK11BI	GGWCC	3 cut(s)	94, 362, 562
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	981
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.