MD10G1195700.v1.1

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
29403142 .. 29407612
4471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1195700.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGCAGGAGGAAAACTGTGAAACACACAAGGGATTTGTGGATGAGACCCTCTCTCTTCCCCTCATCCGATTTGGTTTCCAATTCCCACCTCCAAATGCTCATCCATTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGAAATTATGGAAAGAATACATGAGCCCCACCCAGTTTGTCTGCATGTCACCCCATACTTATAATCTCTCTGTGTTATCTCTTCTATATCTATTTTGCACTGCTTCCTCTTCATGCACTTTGTTGCATAGTCTTGGACTCAAACTTCAGGCAACTTCTAAAATGGAGATAACCAACGTCAGCGAGTATGAGGCCATCGCGAAGGAGAAGTTGCCAAAGATGGCCTATGACTACTACGCATCAGGAGCAGAGGACCAGTGGACTCTTGCTGAAAACAGAAATGCTTTCTCCAGAATTCTGTTTCGACCCCGTATTCTCATAGATGTGAGCCACATAGACATGACCACCACTGTTTTGGGCTTCAAGATCTCAATGCCAATCATGATTGCCCCAACAGCCTTTCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACTGCGAGGGCAGCATCAGCAGCTGGAACAATCATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGAATCCGTTTCTTCCAGCTCTATGTCTACAAGGACAGGCATGTGGTTGCTCAGCTGGTCAGAAGAGCCGAAAGGGCTGGGTTCAAGGCTATTGCTCTTACAGTTGATACCCCAAGGCTTGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTTTGCCTCCGTTTTTGACACTGAAGAACTTTGAGGGTTTGGACCTCGGAAAGATGGACAAAGCTGCTGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGTTCTCTTAGCTGGAAGGATGTGCAGTGGCTTCAGACAATCACTTCACTGCCTATCCTGGTGAAAGGTGTTCTCACTGCTGAAGATGCAAGGATTGCAGTACAAGCCGGAGCAGCTGGTATTATTGTGTCCAACCATGGAGCTCGCCAACTTGATTACGTCCCCTCGACTATCATGGCCCTAGAAGAGGTTGTTAAAGCTGCACAAGGACGCATTCCTGTTTTCTTGGATGGTGGTGTTCGTCGTGGAACAGATGTCTTCAAAGCATTAGCATTGGGTGCCTCTGGCATATTTATTGGGCGCCCTGTGGTGTTCTCTTTGGCTGCTGAAGGAGAGGCAGGCATTAAAAAGGTACTGCAAATGCTGCGCGAAGAGTTTGAGCTAACCATGGCATTAAGTGGATGCCGTTCGCTCAAAGAGATCACCCGCAATCACATTGTGACTGACTGGGACGTTCCTCGCCCTCGCCATCACCCCAGGTTATAG

Protein Analysis

474

Amino Acids

52.26

Weight (kDa)

8.8

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 117 - 459 4.2e-138 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccB1I GGYRCC 2 cut(s) 1214, 1236
AccB7I CCANNNNNTGG 1 cut(s) 794
AccI GTMKAC 1 cut(s) 702
AccII CGCG 2 cut(s) 350, 1305
AciI CCGC 1 cut(s) 1363
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 6 cut(s) 281, 591, 872, 953, 1038, 1284
AcyI GRCGYC 1 cut(s) 1237
AdeI CACNNNGTG 1 cut(s) 1375
AfaI GTAC 2 cut(s) 1038, 1290
AfiI CCNNNNNNNGG 2 cut(s) 794, 1123
AgsI TTSAA 6 cut(s) 514, 645, 653, 666, 760, 1198
AjnI CCWGG 3 cut(s) 673, 993, 1412
Alw21I GWGCWC 1 cut(s) 1081
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 3 cut(s) 342, 372, 1113
ApeKI GCWGC 7 cut(s) 596, 605, 893, 1049, 1136, 1259, 1300
ApoI RAATTY 1 cut(s) 444
AspLEI GCGC 2 cut(s) 1239, 1305
AspS9I GGNCC 4 cut(s) 403, 671, 871, 1114
AsuHPI GGTGA 5 cut(s) 192, 587, 1009, 1351, 1400
AvaII GGWCC 3 cut(s) 403, 671, 871
BanI GGYRCC 2 cut(s) 1214, 1236
BanII GRGCYC 2 cut(s) 179, 1081
BbsI GAAGAC 2 cut(s) 621, 1186
Bbv12I GWGCWC 1 cut(s) 1081
BbvI GCAGC 7 cut(s) 608, 617, 880, 1061, 1123, 1246, 1287
BccI CCATC 5 cut(s) 353, 364, 877, 1160, 1413
BceAI ACGGC 1 cut(s) 1326
BciT130I CCWGG 3 cut(s) 675, 995, 1414
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 1118
BfoI RGCGCY 1 cut(s) 1240
BglI GCCNNNNNGGC 1 cut(s) 749
BglII AGATCT 1 cut(s) 516
BisI GCNGC 7 cut(s) 597, 606, 894, 1050, 1137, 1260, 1301
BlpI GCTNAGC 1 cut(s) 726
BlsI GCNGC 7 cut(s) 598, 607, 895, 1051, 1138, 1261, 1302
Bme1390I CCNGG 3 cut(s) 675, 995, 1414
Bme18I GGWCC 3 cut(s) 403, 671, 871
BmgT120I GGNCC 4 cut(s) 403, 671, 871, 1114
BmiI GGNNCC 2 cut(s) 1216, 1238
BmrFI CCNGG 3 cut(s) 675, 995, 1414
BmrI ACTGGG 2 cut(s) 178, 1393
BmsI GCATC 4 cut(s) 398, 608, 1012, 1328
BmuI ACTGGG 2 cut(s) 178, 1393
BpiI GAAGAC 2 cut(s) 621, 1186
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 1 cut(s) 424
Bpu1102I GCTNAGC 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 1237
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 5 cut(s) 788, 874, 1072, 1323, 1412
BsaXI ACNNNNNCTCC 2 cut(s) 820, 850
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 1123
Bse1I ACTGG 4 cut(s) 184, 406, 673, 1388
BseBI CCWGG 3 cut(s) 675, 995, 1414
BseDI CCNNGG 5 cut(s) 788, 874, 1072, 1323, 1412
BseGI GGATG 7 cut(s) 46, 63, 100, 565, 961, 1171, 1343
BseLI CCNNNNNNNGG 2 cut(s) 794, 1123
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 4 cut(s) 184, 406, 673, 1388
BseXI GCAGC 7 cut(s) 608, 617, 880, 1061, 1123, 1246, 1287
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 2 cut(s) 980, 1122
Bsh1236I CGCG 2 cut(s) 350, 1305
BshFI GGCC 3 cut(s) 344, 374, 1115
BshNI GGYRCC 2 cut(s) 1214, 1236
BsiHKAI GWGCWC 1 cut(s) 1081
BsiSI CCGG 1 cut(s) 1044
BslFI GGGAC 2 cut(s) 1082, 1400
BslI CCNNNNNNNGG 2 cut(s) 794, 1123
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 1082, 1400
BsmI GAATGC 1 cut(s) 1149
BsnI GGCC 3 cut(s) 344, 374, 1115
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 179, 1081
Bsp143I GATC 3 cut(s) 516, 934, 1356
Bsp1720I GCTNAGC 1 cut(s) 726
Bsp19I CCATGG 2 cut(s) 1072, 1323
Bsp68I TCGCGA 1 cut(s) 350
BspACI CCGC 1 cut(s) 1363
BspANI GGCC 3 cut(s) 344, 374, 1115
BspCNI CTCAG 1 cut(s) 739
BspFNI CGCG 2 cut(s) 350, 1305
BspHI TCATGA 3 cut(s) 150, 531, 618
BspLI GGNNCC 2 cut(s) 1216, 1238
BspQI GCTCTTC 1 cut(s) 733
BspT107I GGYRCC 2 cut(s) 1214, 1236
BspTNI GGTCTC 1 cut(s) 38
BsrI ACTGG 4 cut(s) 184, 406, 673, 1388
BssECI CCNNGG 5 cut(s) 788, 874, 1072, 1323, 1412
BssMI GATC 3 cut(s) 516, 934, 1356
BssNI GRCGYC 1 cut(s) 1237
BssT1I CCWWGG 3 cut(s) 788, 1072, 1323
Bst2UI CCWGG 3 cut(s) 675, 995, 1414
Bst4CI ACNGT 3 cut(s) 17, 502, 778
Bst6I CTCTTC 7 cut(s) 60, 237, 265, 648, 733, 1116, 1302
BstACI GRCGYC 1 cut(s) 1237
BstAPI GCANNNNNTGC 3 cut(s) 1031, 1214, 1300
BstC8I GCNNGC 2 cut(s) 1081, 1276
BstDEI CTNAG 2 cut(s) 726, 944
BstDSI CCRYGG 2 cut(s) 1072, 1323
BstENI CCTNNNNNAGG 1 cut(s) 1121
BstF5I GGATG 7 cut(s) 46, 63, 100, 565, 961, 1171, 1343
BstFNI CGCG 2 cut(s) 350, 1305
BstH2I RGCGCY 1 cut(s) 1240
BstHHI GCGC 2 cut(s) 1239, 1305
BstKTI GATC 3 cut(s) 519, 937, 1359
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 516, 934, 1356
BstNI CCWGG 3 cut(s) 675, 995, 1414
BstNSI RCATGY 2 cut(s) 199, 719
BstSCI CCNGG 3 cut(s) 673, 993, 1412
BstUI CGCG 2 cut(s) 350, 1305
BstV1I GCAGC 7 cut(s) 608, 617, 880, 1061, 1123, 1246, 1287
BstV2I GAAGAC 2 cut(s) 621, 1186
BstX2I RGATCY 1 cut(s) 516
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 516
BsuRI GGCC 3 cut(s) 344, 374, 1115
BtgI CCRYGG 2 cut(s) 1072, 1323
BtgZI GCGATG 1 cut(s) 331
BtsCI GGATG 7 cut(s) 46, 63, 100, 565, 961, 1171, 1343
BtsI GCAGTG 4 cut(s) 249, 968, 983, 1011
BtsIMutI CAGTG 7 cut(s) 249, 413, 498, 848, 968, 983, 1011
BtuMI TCGCGA 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 1081, 1276
CaiI CAGNNNCTG 1 cut(s) 608
CciI TCATGA 3 cut(s) 150, 531, 618
CfoI GCGC 2 cut(s) 1239, 1305
Cfr13I GGNCC 4 cut(s) 403, 671, 871, 1114
CseI GACGC 1 cut(s) 1155
Csp6I GTAC 2 cut(s) 1037, 1289
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviQI GTAC 2 cut(s) 1037, 1289
DdeI CTNAG 2 cut(s) 726, 944
DinI GGCGCC 1 cut(s) 1238
DpnI GATC 3 cut(s) 518, 936, 1358
DpnII GATC 3 cut(s) 516, 934, 1356
DraIII CACNNNGTG 1 cut(s) 1375
Eam1104I CTCTTC 7 cut(s) 60, 237, 265, 648, 733, 1116, 1302
EarI CTCTTC 7 cut(s) 60, 237, 265, 648, 733, 1116, 1302
Ecl136II GAGCTC 1 cut(s) 1079
Eco130I CCWWGG 3 cut(s) 788, 1072, 1323
Eco24I GRGCYC 2 cut(s) 179, 1081
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 3 cut(s) 403, 671, 871
Eco53kI GAGCTC 1 cut(s) 1079
Eco57I CTGAAG 6 cut(s) 281, 591, 872, 953, 1038, 1284
EcoICRI GAGCTC 1 cut(s) 1079
EcoNI CCTNNNNNAGG 1 cut(s) 1121
EcoRI GAATTC 1 cut(s) 444
EcoRII CCWGG 3 cut(s) 673, 993, 1412
EcoT14I CCWWGG 3 cut(s) 788, 1072, 1323
EcoT38I GRGCYC 2 cut(s) 179, 1081
EgeI GGCGCC 1 cut(s) 1238
EheI GGCGCC 1 cut(s) 1238
ErhI CCWWGG 3 cut(s) 788, 1072, 1323
FaqI GGGAC 2 cut(s) 1082, 1400
FauI CCCGC 1 cut(s) 1370
FauNDI CATATG 1 cut(s) 916
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 7 cut(s) 597, 606, 894, 1050, 1137, 1260, 1301
FokI GGATG 7 cut(s) 50, 53, 87, 552, 968, 1178, 1350
FriOI GRGCYC 2 cut(s) 179, 1081
Fsp4HI GCNGC 7 cut(s) 597, 606, 894, 1050, 1137, 1260, 1301
FspBI CTAG 1 cut(s) 1118
GlaI GCGC 2 cut(s) 1238, 1304
GluI GCNGC 7 cut(s) 597, 606, 894, 1050, 1137, 1260, 1301
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 424
HaeII RGCGCY 1 cut(s) 1240
HaeIII GGCC 3 cut(s) 344, 374, 1115
HapII CCGG 1 cut(s) 1044
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 2 cut(s) 1239, 1305
Hin1I GRCGYC 1 cut(s) 1237
Hin6I GCGC 2 cut(s) 1237, 1303
HinP1I GCGC 2 cut(s) 1237, 1303
HinfI GANTC 4 cut(s) 288, 412, 678, 899
HpaII CCGG 1 cut(s) 1044
HphI GGTGA 5 cut(s) 192, 587, 1009, 1351, 1400
Hpy166II GTNNAC 2 cut(s) 411, 703
Hpy188I TCNGA 5 cut(s) 68, 555, 737, 878, 972
Hpy8I GTNNAC 2 cut(s) 411, 703
Hpy99I CGWCG 1 cut(s) 1182
HpyAV CCTTC 4 cut(s) 346, 566, 946, 1259
HpyCH4III ACNGT 3 cut(s) 17, 502, 778
HpyCH4IV ACGT 3 cut(s) 327, 1095, 1389
HpyF3I CTNAG 2 cut(s) 726, 944
HpySE526I ACGT 3 cut(s) 327, 1095, 1389
Hsp92I GRCGYC 1 cut(s) 1237
HspAI GCGC 2 cut(s) 1237, 1303
KasI GGCGCC 1 cut(s) 1236
Kzo9I GATC 3 cut(s) 516, 934, 1356
LguI GCTCTTC 1 cut(s) 733
LmnI GCTCC 3 cut(s) 395, 1046, 1076
Lsp1109I GCAGC 7 cut(s) 608, 617, 880, 1061, 1123, 1246, 1287
LweI GCATC 4 cut(s) 398, 608, 1012, 1328
MaeI CTAG 1 cut(s) 1118
MaeII ACGT 3 cut(s) 327, 1095, 1389
MaeIII GTNAC 2 cut(s) 198, 1375
MalI GATC 3 cut(s) 518, 936, 1358
MboI GATC 3 cut(s) 516, 934, 1356
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 2 cut(s) 179, 1081
MluCI AATT 4 cut(s) 80, 155, 444, 930
Mly113I GGCGCC 1 cut(s) 1237
MlyI GAGTC 3 cut(s) 282, 406, 893
MmeI TCCRAC 1 cut(s) 1092
MseI TTAA 3 cut(s) 1131, 1281, 1331
MslI CAYNNNNRTG 2 cut(s) 473, 488
MspA1I CMGCKG 3 cut(s) 608, 730, 1052
MspI CCGG 1 cut(s) 1044
MspR9I CCNGG 3 cut(s) 675, 995, 1414
Mva1269I GAATGC 1 cut(s) 1149
MvaI CCWGG 3 cut(s) 675, 995, 1414
MvnI CGCG 2 cut(s) 350, 1305
NarI GGCGCC 1 cut(s) 1237
NcoI CCATGG 2 cut(s) 1072, 1323
NdeI CATATG 1 cut(s) 916
NdeII GATC 3 cut(s) 516, 934, 1356
NlaIV GGNNCC 2 cut(s) 1216, 1238
NmuCI GTSAC 2 cut(s) 198, 1375
NruI TCGCGA 1 cut(s) 350
NspI RCATGY 2 cut(s) 199, 719
PagI TCATGA 3 cut(s) 150, 531, 618
PciSI GCTCTTC 1 cut(s) 733
PctI GAATGC 1 cut(s) 1149
PfeI GAWTC 1 cut(s) 678
PflFI GACNNNGTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 794
PkrI GCNGC 7 cut(s) 598, 607, 895, 1051, 1138, 1261, 1302
PleI GAGTC 3 cut(s) 282, 406, 893
PluTI GGCGCC 1 cut(s) 1240
PpsI GAGTC 3 cut(s) 282, 406, 893
PsiI TTATAA 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 1081
Psp6I CCWGG 3 cut(s) 673, 993, 1412
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 3 cut(s) 673, 993, 1412
PspN4I GGNNCC 2 cut(s) 1216, 1238
PspPI GGNCC 4 cut(s) 403, 671, 871, 1114
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 1 cut(s) 516
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 3 cut(s) 608, 730, 1052
RruI TCGCGA 1 cut(s) 350
RsaI GTAC 2 cut(s) 1038, 1290
RsaNI GTAC 2 cut(s) 1037, 1289
RseI CAYNNNNRTG 2 cut(s) 473, 488
SacI GAGCTC 1 cut(s) 1081
SapI GCTCTTC 1 cut(s) 733
SaqAI TTAA 3 cut(s) 1131, 1281, 1331
SatI GCNGC 7 cut(s) 597, 606, 894, 1050, 1137, 1260, 1301
Sau3AI GATC 3 cut(s) 516, 934, 1356
Sau96I GGNCC 4 cut(s) 403, 671, 871, 1114
SchI GAGTC 3 cut(s) 282, 406, 893
ScrFI CCNGG 3 cut(s) 675, 995, 1414
SduI GDGCHC 2 cut(s) 179, 1081
SfaNI GCATC 4 cut(s) 398, 608, 1012, 1328
SfoI GGCGCC 1 cut(s) 1238
SinI GGWCC 3 cut(s) 403, 671, 871
SmiMI CAYNNNNRTG 2 cut(s) 473, 488
Sse9I AATT 4 cut(s) 80, 155, 444, 930
SsiI CCGC 1 cut(s) 1363
SspDI GGCGCC 1 cut(s) 1236
SspMI CTAG 1 cut(s) 1118
SstI GAGCTC 1 cut(s) 1081
StyD4I CCNGG 3 cut(s) 673, 993, 1412
StyI CCWWGG 3 cut(s) 788, 1072, 1323
TaaI ACNGT 3 cut(s) 17, 502, 778
TaiI ACGT 3 cut(s) 330, 1098, 1392
TaqI TCGA 2 cut(s) 454, 1103
TasI AATT 4 cut(s) 80, 155, 444, 930
TatI WGTACW 1 cut(s) 1036
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 3 cut(s) 1131, 1281, 1331
Tru9I TTAA 3 cut(s) 1131, 1281, 1331
TscAI CASTG 7 cut(s) 256, 413, 505, 855, 968, 990, 1018
TseFI GTSAC 2 cut(s) 198, 1375
TseI GCWGC 7 cut(s) 596, 605, 893, 1049, 1136, 1259, 1300
Tsp45I GTSAC 2 cut(s) 198, 1375
TspDTI ATGAA 4 cut(s) 167, 252, 621, 903
TspGWI ACGGA 2 cut(s) 671, 828
TspRI CASTG 7 cut(s) 256, 413, 505, 855, 968, 990, 1018
Tth111I GACNNNGTC 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 794
VpaK11BI GGWCC 3 cut(s) 403, 671, 871
XagI CCTNNNNNAGG 1 cut(s) 1121
XapI RAATTY 1 cut(s) 444
XceI RCATGY 2 cut(s) 199, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 1 cut(s) 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.