Prupe.4G148200_v2.0.a1

Peroxisomal (S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
8463430 .. 8469234
5805 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G148200.2

Sequence Viewer

Length: 1110 bp
ATGGAGATAACCAACGTCAGTGAGTATGAGGCCATTGCAAAGCAGAAATTGCCAAAGATGGTCTTTGACTACTATGCATCAGGAGCAGAGGACCAGTGGACTCTGGCTGAAAACAGAAATGCTTTCTCAAAAATTCTGTTTCGACCCCGTATTCTTATTGATGTAAGCCACATAGACATGACCACTACTGTTTTGGGCTTCAAAATCTCAATGCCAATCATGATTGCCCCAACAGCTATGCAGAAAATGGCTCATCCTGAAGGTGAATATGCTACCGCTAGAGCAGCATCAGCAGCGGGAACAATTATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGAGTCCGTTTTTTCCAGCTCTATGTCTACAAGGACAGGCATGTTGTTGCTCAGCTAGTGAGAAGAGCTGAAAGGGCTGGGTTCAAGGCTATTGCTCTTACAGTTGATACTCCAAGGCTGGGTCGCAGAGAAGCTGACATCAAGAACAGATTTACTTTACCTCCATTTCTGACATTGAAGAACTTTGAAGGTTTGGATCTTGGAAAGATGGACGAAGCTGCTGACTCAGGACTTGCTTCATATGTTGCTGGTCAAATCGATCGTTCTCTTAGCTGGAAGGATGTGCAGTGGCTTCAGACAATCACTAAACTGCCTATTCTAGTGAAGGGTGTTCTCACTGCTGAAGATGCAAGGCTTGCGGTACAAGCAGGAGCAGCTGGGATTATTGTATCCAATCATGGAGCTCGCCAACTTGATTATGTCCCTTCGACTATTATGGCCCTAGAAGAGGTTGTCAAAGCTGCACAAGGGCGTATTCCTGTTTTCTTGGATGGTGGTGTTCGTCGTGGAACAGATGTCTTTAAAGCATTAGCACTGGGTGCATCTGGCATATTTATTGGGCGCCCTGTGGTGTTCTCTTTGGCTGCTGAAGGAGAGGCTGGCATCAGAAAAGTACTCCAAATGCTGCGTGAAGAGTTTGAGCTAACCATGGCATTAAGTGGATGCCGTTCACTCAAAGAAATCACCCGTGACCACATTGTGACTGAGTGGGACACTCCTCGCCCTCGCCATTTGCCCAGGTTATAG

Protein Analysis

370

Amino Acids

40.62

Weight (kDa)

9.02

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 924
AccI GTMKAC 1 cut(s) 390
AciI CCGC 3 cut(s) 276, 296, 722
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 4 cut(s) 279, 641, 726, 972
AcyI GRCGYC 1 cut(s) 925
AdeI CACNNNGTG 2 cut(s) 902, 1063
AfaI GTAC 2 cut(s) 726, 978
AfiI CCNNNNNNNGG 2 cut(s) 482, 811
AgsI TTSAA 7 cut(s) 202, 333, 341, 354, 448, 541, 551
AhdI GACNNNNNGTC 1 cut(s) 365
AjnI CCWGG 2 cut(s) 361, 1100
Alw21I GWGCWC 1 cut(s) 769
AlwI GGATC 1 cut(s) 567
AoxI GGCC 2 cut(s) 30, 801
ApeKI GCWGC 7 cut(s) 284, 293, 581, 737, 824, 947, 988
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 1 cut(s) 927
AspS9I GGNCC 3 cut(s) 91, 359, 802
AsuHPI GGTGA 2 cut(s) 275, 1039
AvaII GGWCC 2 cut(s) 91, 359
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 7 cut(s) 296, 305, 568, 749, 811, 934, 975
BccI CCATC 3 cut(s) 52, 565, 848
BceAI ACGGC 1 cut(s) 1014
BciT130I CCWGG 2 cut(s) 363, 1102
BciVI GTATCC 1 cut(s) 763
BfaI CTAG 4 cut(s) 279, 419, 683, 806
BfoI RGCGCY 1 cut(s) 928
BfuI GTATCC 1 cut(s) 763
BisI GCNGC 7 cut(s) 285, 294, 582, 738, 825, 948, 989
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 7 cut(s) 286, 295, 583, 739, 826, 949, 990
BmcAI AGTACT 1 cut(s) 978
Bme1390I CCNGG 2 cut(s) 363, 1102
Bme18I GGWCC 2 cut(s) 91, 359
BmeRI GACNNNNNGTC 1 cut(s) 365
BmgT120I GGNCC 3 cut(s) 91, 359, 802
BmiI GGNNCC 1 cut(s) 926
BmrFI CCNGG 2 cut(s) 363, 1102
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 6 cut(s) 86, 296, 700, 914, 975, 1016
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 384
Bpu1102I GCTNAGC 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 925
BsaJI CCNNGG 3 cut(s) 476, 1011, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 811
Bse1I ACTGG 3 cut(s) 94, 361, 903
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 2 cut(s) 363, 1102
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 3 cut(s) 476, 1011, 1100
BseGI GGATG 4 cut(s) 253, 649, 859, 1031
BseLI CCNNNNNNNGG 2 cut(s) 482, 811
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 428, 603, 1059
BseNI ACTGG 3 cut(s) 94, 361, 903
BseRI GAGGAG 1 cut(s) 1071
BseXI GCAGC 7 cut(s) 296, 305, 568, 749, 811, 934, 975
BseYI CCCAGC 3 cut(s) 440, 481, 740
BsgI GTGCAG 2 cut(s) 668, 810
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 2 cut(s) 32, 803
BshNI GGYRCC 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 621
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 769
BslFI GGGAC 2 cut(s) 770, 1088
BslI CCNNNNNNNGG 2 cut(s) 482, 811
BsmFI GGGAC 2 cut(s) 770, 1088
BsnI GGCC 2 cut(s) 32, 803
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 2 cut(s) 559, 622
Bsp1720I GCTNAGC 1 cut(s) 414
Bsp19I CCATGG 1 cut(s) 1011
BspACI CCGC 3 cut(s) 276, 296, 722
BspANI GGCC 2 cut(s) 32, 803
BspCNI CTCAG 3 cut(s) 427, 602, 1060
BspDI ATCGAT 1 cut(s) 621
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 926
BspPI GGATC 1 cut(s) 567
BspQI GCTCTTC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 924
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 3 cut(s) 94, 361, 903
BssECI CCNNGG 3 cut(s) 476, 1011, 1100
BssMI GATC 2 cut(s) 559, 622
BssNI GRCGYC 1 cut(s) 925
BssT1I CCWWGG 2 cut(s) 476, 1011
Bst2UI CCWGG 2 cut(s) 363, 1102
Bst4CI ACNGT 2 cut(s) 190, 466
Bst6I CTCTTC 4 cut(s) 336, 421, 804, 990
BstACI GRCGYC 1 cut(s) 925
BstAPI GCANNNNNTGC 3 cut(s) 49, 719, 902
BstC8I GCNNGC 3 cut(s) 720, 769, 964
BstDEI CTNAG 4 cut(s) 414, 589, 632, 1068
BstDSI CCRYGG 1 cut(s) 1011
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 4 cut(s) 253, 649, 859, 1031
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 1 cut(s) 927
BstKTI GATC 2 cut(s) 562, 625
BstMBI GATC 2 cut(s) 559, 622
BstMCI CGRYCG 1 cut(s) 625
BstNI CCWGG 2 cut(s) 363, 1102
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 361, 1100
BstV1I GCAGC 7 cut(s) 296, 305, 568, 749, 811, 934, 975
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 621
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 2 cut(s) 32, 803
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 1011
BtsCI GGATG 4 cut(s) 253, 649, 859, 1031
BtsI GCAGTG 2 cut(s) 656, 699
BtsIMutI CAGTG 5 cut(s) 25, 101, 656, 699, 896
Cac8I GCNNGC 3 cut(s) 720, 769, 964
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 927
Cfr13I GGNCC 3 cut(s) 91, 359, 802
ClaI ATCGAT 1 cut(s) 621
Csp6I GTAC 2 cut(s) 725, 977
CviAII CATG 6 cut(s) 178, 220, 321, 404, 761, 1012
CviQI GTAC 2 cut(s) 725, 977
DdeI CTNAG 4 cut(s) 414, 589, 632, 1068
DinI GGCGCC 1 cut(s) 926
DpnI GATC 2 cut(s) 561, 624
DpnII GATC 2 cut(s) 559, 622
DraI TTTAAA 1 cut(s) 886
DraIII CACNNNGTG 2 cut(s) 902, 1063
DriI GACNNNNNGTC 1 cut(s) 365
Eam1104I CTCTTC 4 cut(s) 336, 421, 804, 990
Eam1105I GACNNNNNGTC 1 cut(s) 365
EarI CTCTTC 4 cut(s) 336, 421, 804, 990
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 2 cut(s) 476, 1011
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 91, 359
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 4 cut(s) 279, 641, 726, 972
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 361, 1100
EcoT14I CCWWGG 2 cut(s) 476, 1011
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 769
EgeI GGCGCC 1 cut(s) 926
EheI GGCGCC 1 cut(s) 926
ErhI CCWWGG 2 cut(s) 476, 1011
FaeI CATG 6 cut(s) 181, 223, 324, 407, 764, 1015
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 2 cut(s) 770, 1088
FatI CATG 6 cut(s) 177, 219, 320, 403, 760, 1011
FauI CCCGC 1 cut(s) 289
FauNDI CATATG 1 cut(s) 604
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 285, 294, 582, 738, 825, 948, 989
FokI GGATG 4 cut(s) 240, 656, 866, 1038
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 7 cut(s) 285, 294, 582, 738, 825, 948, 989
FspBI CTAG 4 cut(s) 279, 419, 683, 806
GlaI GCGC 1 cut(s) 926
GluI GCNGC 7 cut(s) 285, 294, 582, 738, 825, 948, 989
GsaI CCCAGC 3 cut(s) 444, 485, 744
GsuI CTGGAG 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 2 cut(s) 32, 803
HhaI GCGC 1 cut(s) 927
Hin1I GRCGYC 1 cut(s) 925
Hin1II CATG 6 cut(s) 181, 223, 324, 407, 764, 1015
Hin6I GCGC 1 cut(s) 925
HinP1I GCGC 1 cut(s) 925
HinfI GANTC 3 cut(s) 100, 366, 587
HphI GGTGA 2 cut(s) 275, 1039
Hpy166II GTNNAC 3 cut(s) 99, 391, 1034
Hpy188I TCNGA 3 cut(s) 534, 660, 971
Hpy188III TCNNGA 5 cut(s) 81, 220, 257, 505, 591
Hpy8I GTNNAC 3 cut(s) 99, 391, 1034
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 6 cut(s) 254, 545, 634, 682, 798, 947
HpyCH4III ACNGT 2 cut(s) 190, 466
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 7 cut(s) 38, 77, 241, 649, 713, 827, 905
HpyF3I CTNAG 4 cut(s) 414, 589, 632, 1068
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 925
Hsp92II CATG 6 cut(s) 181, 223, 324, 407, 764, 1015
HspAI GCGC 1 cut(s) 925
KasI GGCGCC 1 cut(s) 924
Kzo9I GATC 2 cut(s) 559, 622
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 3 cut(s) 83, 734, 764
Lsp1109I GCAGC 7 cut(s) 296, 305, 568, 749, 811, 934, 975
LweI GCATC 6 cut(s) 86, 296, 700, 914, 975, 1016
MaeI CTAG 4 cut(s) 279, 419, 683, 806
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 1052, 1063
MalI GATC 2 cut(s) 561, 624
MboI GATC 2 cut(s) 559, 622
MboII GAAGA 7 cut(s) 309, 353, 438, 553, 719, 821, 1007
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 3 cut(s) 47, 132, 303
Mly113I GGCGCC 1 cut(s) 925
MlyI GAGTC 3 cut(s) 94, 375, 581
MnlI CCTC 8 cut(s) 22, 82, 337, 534, 805, 952, 1092, 1098
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 2 cut(s) 885, 1019
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 2 cut(s) 296, 740
MspR9I CCNGG 2 cut(s) 363, 1102
MvaI CCWGG 2 cut(s) 363, 1102
NarI GGCGCC 1 cut(s) 925
NcoI CCATGG 1 cut(s) 1011
NdeI CATATG 1 cut(s) 604
NdeII GATC 2 cut(s) 559, 622
NlaIII CATG 6 cut(s) 181, 223, 324, 407, 764, 1015
NlaIV GGNNCC 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 1052, 1063
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 407
PagI TCATGA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 421
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 7 cut(s) 286, 295, 583, 739, 826, 949, 990
Ple19I CGATCG 1 cut(s) 625
PleI GAGTC 3 cut(s) 94, 374, 581
PluTI GGCGCC 1 cut(s) 928
PpsI GAGTC 3 cut(s) 94, 374, 581
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 361, 1100
PspFI CCCAGC 3 cut(s) 440, 481, 740
PspGI CCWGG 2 cut(s) 361, 1100
PspN4I GGNNCC 1 cut(s) 926
PspPI GGNCC 3 cut(s) 91, 359, 802
PsuI RGATCY 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 313
PvuI CGATCG 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 2 cut(s) 726, 978
RsaNI GTAC 2 cut(s) 725, 977
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 885, 1019
SatI GCNGC 7 cut(s) 285, 294, 582, 738, 825, 948, 989
Sau3AI GATC 2 cut(s) 559, 622
Sau96I GGNCC 3 cut(s) 91, 359, 802
ScaI AGTACT 1 cut(s) 978
SchI GAGTC 3 cut(s) 94, 375, 581
ScrFI CCNGG 2 cut(s) 363, 1102
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 6 cut(s) 86, 296, 700, 914, 975, 1016
SfoI GGCGCC 1 cut(s) 926
SinI GGWCC 2 cut(s) 91, 359
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 3 cut(s) 47, 132, 303
SsiI CCGC 3 cut(s) 276, 296, 722
SspDI GGCGCC 1 cut(s) 924
SspMI CTAG 4 cut(s) 279, 419, 683, 806
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 361, 1100
StyI CCWWGG 2 cut(s) 476, 1011
TaaI ACNGT 2 cut(s) 190, 466
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 142, 621, 791
TasI AATT 3 cut(s) 47, 132, 303
TatI WGTACW 1 cut(s) 976
Tru1I TTAA 2 cut(s) 885, 1019
Tru9I TTAA 2 cut(s) 885, 1019
TscAI CASTG 5 cut(s) 25, 101, 656, 706, 903
TseFI GTSAC 2 cut(s) 1052, 1063
TseI GCWGC 7 cut(s) 284, 293, 581, 737, 824, 947, 988
Tsp45I GTSAC 2 cut(s) 1052, 1063
TspDTI ATGAA 2 cut(s) 309, 591
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 5 cut(s) 25, 101, 656, 706, 903
Tth111I GACNNNGTC 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 91, 359
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 4 cut(s) 279, 419, 683, 806
ZrmI AGTACT 1 cut(s) 978
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.