Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0006477

Physical Location & Seq

Genomic Coordinates Forward (+)

5846 .. 10341

Gene Structure 4496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgggggagataaccaacgtcagtgagtatgaggcaattgcaaagcagaaactgccaaagatggtgtttgactattatgcatcaggagcagaggaccagtggactctggctgaaaacagaaatgctttctccaagattctgtttcgaccccgtattcttattgatgtaagcaacatcgacatgaccactaccgttttgggcttcaaaatttccatgccaatcatgattgccccaacagccatgcagaaaatggctcatcctgaaggtgaatatgctactgcacgagcagcatcagcagcaggaacaattatgactttatcatcatgggctacttcaagtgttgaagaggttgcttcaactggacctggaatccgttttttccagctctatgtatacaaggacaggcatgtagttgctcagctagtgagaagagctgaaagagctgggttcaaggcaattgctcttacagttgatactccaaggctgggtcgcagagaagctgacatcaagaacagatttactctacctccatttctgacactgaagaactttgaaggtttggaccttggaaagatggaccaagctaatgactccggacttgcttcatatgttgctggtcaaatcgatcgttctcttagctggaaggatgtaaagtggctccagacaatcaccaaacttcctattctggtcaagggtgttctcactgctgaagatgcaaggcttgctgtacaatctggagcagctggaatcattgtatccaatcatggtgctcgacaacttgattatgtcccatcgactatcatggccttagaagaggttgttaaagctgcgcaaggacgtattcctgttttcttggatggtggtgttcgtcgtggaacagatgtctttaaagcattagcattgggtgcctctggaatatttattggacgccctgtagtgttctctttggcagctgaaggagaggctggcattagaaaagtactccaaatgttgcgtgaggagtttgagctaaccatggcattaagtggatgccgttcactcaaagaaattacccgcaatcacattgtgactgagtgggatgctcctcgcccagtacccaggttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0022626 GO:0030054 GO:0032991 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

368

Amino Acids

40.39

Weight (kDa)

9.28

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14415 AT3G14415 AT3G14415 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420 AT3G14420
fragaria_vesca	FvH4_3g16520
malus_domestica	MD05G1209300.v1.1 MD10G1195700.v1.1
prunus_persica	Prupe.4G148200_v2.0.a1 Prupe.4G148200_v2.0.a1
pyrus_communis	pycom05g19540 pycom10g16930
rosa_chinensis	RchiOBHm_Chr5g0027571
rosa_laevigata	RLG00000033027
rosa_multiflora	Rmu_sc0001647.1_g000002 Rmu_sc0011056.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051970
rosa_rugosa	Rorug05G0099800 Rorug05G0099800
rosa_samantha	Rh5AG194000 Rh5BG192000
rosa_wichuraiana	Rw5G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	593
AciI	CCGC	1 cut(s)	1054
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	4 cut(s)	282, 563, 729, 975
AcyI	GRCGYC	1 cut(s)	928
AdeI	CACNNNGTG	1 cut(s)	1066
AfaI	GTAC	3 cut(s)	729, 981, 1095
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	6 cut(s)	205, 336, 344, 357, 451, 554
AjnI	CCWGG	2 cut(s)	364, 1097
Alw21I	GWGCWC	1 cut(s)	772
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	5 cut(s)	287, 296, 740, 827, 950
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	4 cut(s)	94, 362, 562, 577
AsuHPI	GGTGA	2 cut(s)	278, 661
AvaII	GGWCC	4 cut(s)	94, 362, 562, 577
BanI	GGYRCC	1 cut(s)	905
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	5 cut(s)	299, 308, 752, 814, 962
BccI	CCATC	4 cut(s)	55, 568, 799, 851
BceAI	ACGGC	1 cut(s)	1017
BciT130I	CCWGG	2 cut(s)	366, 1099
BciVI	GTATCC	1 cut(s)	766
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	5 cut(s)	289, 298, 742, 829, 952
BmcAI	AGTACT	1 cut(s)	981
Bme1390I	CCNGG	2 cut(s)	366, 1099
Bme18I	GGWCC	4 cut(s)	94, 362, 562, 577
BmgT120I	GGNCC	4 cut(s)	94, 362, 562, 577
BmiI	GGNNCC	2 cut(s)	659, 907
BmrFI	CCNGG	2 cut(s)	366, 1099
BmrI	ACTGGG	1 cut(s)	1085
BmsI	GCATC	5 cut(s)	89, 299, 703, 1019, 1069
BmuI	ACTGGG	1 cut(s)	1085
BpmI	CTGGAG	2 cut(s)	644, 756
Bpu1102I	GCTNAGC	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	928
BsaJI	CCNNGG	4 cut(s)	479, 565, 1014, 1097
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	97, 364, 1091
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	366, 1099
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	479, 565, 1014, 1097
BseGI	GGATG	5 cut(s)	256, 652, 862, 1034, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	431, 1062
BseNI	ACTGG	3 cut(s)	97, 364, 1091
BseRI	GAGGAG	2 cut(s)	1013, 1074
BseXI	GCAGC	5 cut(s)	299, 308, 752, 814, 962
BseYI	CCCAGC	2 cut(s)	443, 484
BsgI	GTGCAG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	628
BshFI	GGCC	1 cut(s)	806
BshNI	GGYRCC	1 cut(s)	905
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp13I	TCCGGA	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	1 cut(s)	417
Bsp19I	CCATGG	1 cut(s)	1014
BspACI	CCGC	1 cut(s)	1054
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	2 cut(s)	430, 1063
BspDI	ATCGAT	1 cut(s)	624
BspEI	TCCGGA	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	659, 907
BspQI	GCTCTTC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	905
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	97, 364, 1091
BssECI	CCNNGG	4 cut(s)	479, 565, 1014, 1097
BssMI	GATC	1 cut(s)	625
BssNAI	GTATAC	1 cut(s)	394
BssNI	GRCGYC	1 cut(s)	928
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	3 cut(s)	479, 565, 1014
Bst1107I	GTATAC	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	366, 1099
Bst4CI	ACNGT	2 cut(s)	193, 469
Bst6I	CTCTTC	3 cut(s)	339, 424, 807
BstACI	GRCGYC	1 cut(s)	928
BstAPI	GCANNNNNTGC	3 cut(s)	52, 722, 905
BstAUI	TGTACA	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	723, 967
BstDEI	CTNAG	4 cut(s)	417, 635, 808, 1071
BstDSI	CCRYGG	1 cut(s)	1014
BstF5I	GGATG	5 cut(s)	256, 652, 862, 1034, 1084
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	625
BstMCI	CGRYCG	1 cut(s)	628
BstNI	CCWGG	2 cut(s)	366, 1099
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	364, 1097
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	299, 308, 752, 814, 962
BstZ17I	GTATAC	1 cut(s)	394
Bsu15I	ATCGAT	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	1 cut(s)	806
BsuTUI	ATCGAT	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	1014
BtsCI	GGATG	5 cut(s)	256, 652, 862, 1034, 1084
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	4 cut(s)	28, 104, 539, 702
Cac8I	GCNNGC	2 cut(s)	723, 967
CaiI	CAGNNNCTG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	832
Cfr13I	GGNCC	4 cut(s)	94, 362, 562, 577
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	1 cut(s)	936
Csp6I	GTAC	3 cut(s)	728, 980, 1094
CviAII	CATG	9 cut(s)	181, 214, 223, 241, 324, 407, 764, 802, 1015
CviQI	GTAC	3 cut(s)	728, 980, 1094
DdeI	CTNAG	4 cut(s)	417, 635, 808, 1071
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	1066
Eam1104I	CTCTTC	3 cut(s)	339, 424, 807
EarI	CTCTTC	3 cut(s)	339, 424, 807
Eco130I	CCWWGG	3 cut(s)	479, 565, 1014
Eco47I	GGWCC	4 cut(s)	94, 362, 562, 577
Eco57I	CTGAAG	4 cut(s)	282, 563, 729, 975
EcoRII	CCWGG	2 cut(s)	364, 1097
EcoT14I	CCWWGG	3 cut(s)	479, 565, 1014
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	3 cut(s)	479, 565, 1014
FaeI	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	9 cut(s)	180, 213, 222, 240, 323, 406, 763, 801, 1014
FauI	CCCGC	1 cut(s)	1061
FauNDI	CATATG	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
FokI	GGATG	5 cut(s)	243, 659, 869, 1041, 1091
Fsp4HI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
FspBI	CTAG	1 cut(s)	422
FspI	TGCGCA	1 cut(s)	831
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
GsaI	CCCAGC	2 cut(s)	447, 488
GsuI	CTGGAG	2 cut(s)	644, 756
HaeIII	GGCC	1 cut(s)	806
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	1 cut(s)	832
Hin1I	GRCGYC	1 cut(s)	928
Hin1II	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HinfI	GANTC	5 cut(s)	103, 136, 369, 590, 747
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	278, 661
Hpy166II	GTNNAC	3 cut(s)	102, 394, 1037
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	8 cut(s)	84, 223, 260, 508, 594, 661, 735, 912
Hpy8I	GTNNAC	3 cut(s)	102, 394, 1037
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	4 cut(s)	257, 548, 637, 950
HpyCH4III	ACNGT	2 cut(s)	193, 469
HpyCH4IV	ACGT	2 cut(s)	18, 838
HpyCH4V	TGCA	5 cut(s)	41, 80, 244, 281, 716
HpyF3I	CTNAG	4 cut(s)	417, 635, 808, 1071
HpySE526I	ACGT	2 cut(s)	18, 838
Hsp92I	GRCGYC	1 cut(s)	928
Hsp92II	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
HspAI	GCGC	1 cut(s)	830
Kpn2I	TCCGGA	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	625
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	4 cut(s)	86, 663, 737, 1087
Lsp1109I	GCAGC	5 cut(s)	299, 308, 752, 814, 962
LweI	GCATC	5 cut(s)	89, 299, 703, 1019, 1069
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	18, 838
MaeIII	GTNAC	1 cut(s)	1066
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	5 cut(s)	356, 441, 556, 722, 824
MfeI	CAATTG	2 cut(s)	36, 456
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	5 cut(s)	36, 207, 306, 456, 1047
MlyI	GAGTC	2 cut(s)	97, 584
MnlI	CCTC	9 cut(s)	25, 85, 340, 537, 808, 919, 955, 991, 1095
Mph1103I	ATGCAT	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	593
MseI	TTAA	3 cut(s)	822, 888, 1022
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	743, 953
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	2 cut(s)	366, 1099
MunI	CAATTG	2 cut(s)	36, 456
MvaI	CCWGG	2 cut(s)	366, 1099
NcoI	CCATGG	1 cut(s)	1014
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	9 cut(s)	184, 217, 226, 244, 327, 410, 767, 805, 1018
NlaIV	GGNNCC	2 cut(s)	659, 907
NmuCI	GTSAC	1 cut(s)	1066
NsbI	TGCGCA	1 cut(s)	831
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	136, 369, 747
PkrI	GCNGC	5 cut(s)	289, 298, 742, 829, 952
Ple19I	CGATCG	1 cut(s)	628
PleI	GAGTC	2 cut(s)	97, 584
PpsI	GAGTC	2 cut(s)	97, 584
Psp6I	CCWGG	2 cut(s)	364, 1097
PspFI	CCCAGC	2 cut(s)	443, 484
PspGI	CCWGG	2 cut(s)	364, 1097
PspN4I	GGNNCC	2 cut(s)	659, 907
PspPI	GGNCC	4 cut(s)	94, 362, 562, 577
PstNI	CAGNNNCTG	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	628
PvuII	CAGCTG	2 cut(s)	743, 953
RsaI	GTAC	3 cut(s)	729, 981, 1095
RsaNI	GTAC	3 cut(s)	728, 980, 1094
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	822, 888, 1022
SatI	GCNGC	5 cut(s)	288, 297, 741, 828, 951
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	4 cut(s)	94, 362, 562, 577
ScaI	AGTACT	1 cut(s)	981
SchI	GAGTC	2 cut(s)	97, 584
ScrFI	CCNGG	2 cut(s)	366, 1099
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	5 cut(s)	89, 299, 703, 1019, 1069
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	4 cut(s)	94, 362, 562, 577
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	36, 207, 306, 456, 1047
SsiI	CCGC	1 cut(s)	1054
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	364, 1097
StyI	CCWWGG	3 cut(s)	479, 565, 1014
TaaI	ACNGT	2 cut(s)	193, 469
TaiI	ACGT	2 cut(s)	21, 841
TaqI	TCGA	5 cut(s)	145, 177, 624, 772, 794
TasI	AATT	5 cut(s)	36, 207, 306, 456, 1047
TatI	WGTACW	2 cut(s)	727, 979
TfiI	GAWTC	3 cut(s)	136, 369, 747
Tru1I	TTAA	3 cut(s)	822, 888, 1022
Tru9I	TTAA	3 cut(s)	822, 888, 1022
TscAI	CASTG	4 cut(s)	28, 104, 546, 709
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	5 cut(s)	287, 296, 740, 827, 950
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	28, 104, 546, 709
VpaK11BI	GGWCC	4 cut(s)	94, 362, 562, 577
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 247
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	981
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.