AT3G15660

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011348
Physical Location & Seq
Reverse (-)
5307694 .. 5309624
1931 bp
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UTR
Exon/CDS
Intron
AT3G15660.2

Sequence Viewer

Length: 510 bp
ATGGCGGCTTCTTTATCGAGCAGACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTGCCAAGTGATTCAGATACACATGATGATTTCAAGCCTACACAAAAAGTCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAAACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGCCACTGGCCTACGTTTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGCACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

169

Amino Acids

18.73

Weight (kDa)

5.92

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 78 - 142 2.2e-19 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AatII GACGTC 2 cut(s) 77, 492
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 494
AciI CCGC 2 cut(s) 5, 429
AcuI CTGAAG 1 cut(s) 361
AcyI GRCGYC 2 cut(s) 74, 489
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 154, 358
AluBI AGCT 3 cut(s) 53, 282, 481
AluI AGCT 3 cut(s) 53, 282, 481
Alw26I GTCTC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 384
Aor13HI TCCGGA 1 cut(s) 494
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 4 cut(s) 63, 287, 330, 341
BglII AGATCT 1 cut(s) 402
BisI GCNGC 3 cut(s) 6, 305, 430
BlsI GCNGC 3 cut(s) 7, 306, 431
BmsI GCATC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 351
BsaHI GRCGYC 2 cut(s) 74, 489
BsaWI WCCGGW 1 cut(s) 494
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 389
BseAI TCCGGA 1 cut(s) 494
BseGI GGATG 2 cut(s) 105, 441
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 281, 447
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 2 cut(s) 155, 239
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 496
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 2 cut(s) 155, 239
BsnI GGCC 1 cut(s) 388
Bsp13I TCCGGA 1 cut(s) 494
Bsp143I GATC 2 cut(s) 237, 402
BspACI CCGC 2 cut(s) 5, 429
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 280, 446
BspEI TCCGGA 1 cut(s) 494
BsrI ACTGG 1 cut(s) 389
BssMI GATC 2 cut(s) 237, 402
BssNI GRCGYC 2 cut(s) 74, 489
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 2 cut(s) 74, 489
BstDEI CTNAG 2 cut(s) 267, 433
BstF5I GGATG 2 cut(s) 105, 441
BstKTI GATC 2 cut(s) 240, 405
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 2 cut(s) 237, 402
BstNSI RCATGY 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 105, 441
BtsIMutI CAGTG 3 cut(s) 126, 275, 382
CaiI CAGNNNCTG 1 cut(s) 384
CviAII CATG 3 cut(s) 143, 244, 451
CviJI RGCY 9 cut(s) 8, 53, 157, 282, 290, 381, 388, 432, 481
CviKI_1 RGCY 9 cut(s) 8, 53, 157, 282, 290, 381, 388, 432, 481
DdeI CTNAG 2 cut(s) 267, 433
DpnI GATC 2 cut(s) 239, 404
DpnII GATC 2 cut(s) 237, 402
Eco32I GATATC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 3 cut(s) 146, 247, 454
FaiI YATR 6 cut(s) 29, 144, 236, 245, 312, 452
FaqI GGGAC 2 cut(s) 155, 239
FatI CATG 3 cut(s) 142, 243, 450
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 6, 305, 430
FokI GGATG 2 cut(s) 112, 428
Fsp4HI GCNGC 3 cut(s) 6, 305, 430
FspBI CTAG 4 cut(s) 63, 287, 330, 341
GluI GCNGC 3 cut(s) 6, 305, 430
HaeIII GGCC 1 cut(s) 388
HapII CCGG 1 cut(s) 495
Hin1I GRCGYC 2 cut(s) 74, 489
Hin1II CATG 3 cut(s) 146, 247, 454
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 5 cut(s) 36, 131, 179, 188, 260
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 136, 296, 436
Hpy188III TCNNGA 4 cut(s) 176, 330, 341, 495
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 214, 385, 455
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 3 cut(s) 74, 392, 489
HpyCH4V TGCA 3 cut(s) 80, 304, 454
HpyF3I CTNAG 2 cut(s) 267, 433
HpySE526I ACGT 3 cut(s) 74, 392, 489
Hsp92I GRCGYC 2 cut(s) 74, 489
Hsp92II CATG 3 cut(s) 146, 247, 454
Kpn2I TCCGGA 1 cut(s) 494
Kzo9I GATC 2 cut(s) 237, 402
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 3 cut(s) 243, 270, 370
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 89
MaeI CTAG 4 cut(s) 63, 287, 330, 341
MaeII ACGT 3 cut(s) 74, 392, 489
MalI GATC 2 cut(s) 239, 404
MboI GATC 2 cut(s) 237, 402
MboII GAAGA 2 cut(s) 356, 397
MflI RGATCY 1 cut(s) 402
MluCI AATT 1 cut(s) 467
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 3 cut(s) 124, 183, 276
MroI TCCGGA 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 4 cut(s) 195, 411, 447, 483
MspI CCGG 1 cut(s) 495
NdeII GATC 2 cut(s) 237, 402
NlaIII CATG 3 cut(s) 146, 247, 454
NspI RCATGY 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 36, 131, 179, 260
PkrI GCNGC 3 cut(s) 7, 306, 431
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 402
SaqAI TTAA 4 cut(s) 195, 411, 447, 483
SatI GCNGC 3 cut(s) 6, 305, 430
Sau3AI GATC 2 cut(s) 237, 402
SchI GAGTC 1 cut(s) 182
SetI ASST 8 cut(s) 55, 77, 253, 284, 395, 466, 483, 492
SfaNI GCATC 1 cut(s) 89
Sse9I AATT 1 cut(s) 467
SsiI CCGC 2 cut(s) 5, 429
SspMI CTAG 4 cut(s) 63, 287, 330, 341
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 3 cut(s) 77, 395, 492
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 467
TauI GCSGC 2 cut(s) 8, 432
TfiI GAWTC 4 cut(s) 36, 131, 179, 260
Tru1I TTAA 4 cut(s) 195, 411, 447, 483
Tru9I TTAA 4 cut(s) 195, 411, 447, 483
TscAI CASTG 3 cut(s) 126, 275, 389
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 260, 397, 412
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 3 cut(s) 126, 275, 389
XbaI TCTAGA 2 cut(s) 329, 340
XceI RCATGY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 4 cut(s) 63, 287, 330, 341
ZraI GACGTC 2 cut(s) 75, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.