MD17G1204000.v1.1

Monothiol glutaredoxin-S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011348
Physical Location & Seq
Reverse (-)
24676595 .. 24679853
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1204000.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGACCAAAAATATACCAATAAAAAAGAAGGAAACTGGATTCAAATAGACCGACACACGTTGCAGAAACCTTCAACACACTCGAGAAAAACGCACCGTTTCACCAGGTTCCCTCTTCCTTCTCAGCTCAGAGCTTCAGCCTCCTTCCACGGCGGTTCCACCTCTCTCCTCCTCTTCTTCCAGGGGCTTTCGTTTTCCGGGACGGCTGCTCGTCCTGCCACAATTGCTCCTGCATCCTTTTATCTTAGTGGCTTGAGATACAACACCAGTGTGCCAAATGAGCCCGACACACATGATGATTTTAAACCGACTAATAAGCTTGAGAGTTCTGACCTTAGCTTGAAGGACCTTGTTGAAAAGGATGTCAAGGACAACCCTGTAATGCTTTACATGAAAGGAGGGCCTGAACTTCCTCAATGTGGATTCAGCTCACTTGCTGTTAGAGTATTAAAACTATATGAAGTTCCTTTGGCTTCTAGAAATATCTTGGAAGACCCTGAACTGAAAAGTGCTGTAAAAGCCTTTAGCCACTGGCCGACGTTTCCTCAGATATTCATCAAGGGGGAGTTCGTCGGAGGGTCAGATATTATTCTCAATATGCATCAGAGTGGTGAACTGAAGGAAAAGCTTAAGGACATCTCAGGCGGTCAAGAGAAGAAATCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

223

Amino Acids

24.83

Weight (kDa)

9.04

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 127 - 191 4.2e-18 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 153, 645
AcoI YGGCCR 1 cut(s) 533
AcuI CTGAAG 2 cut(s) 120, 638
AfiI CCNNNNNNNGG 1 cut(s) 419
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 4 cut(s) 44, 75, 343, 356
AjnI CCWGG 2 cut(s) 104, 180
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 6 cut(s) 127, 134, 319, 339, 429, 628
AluI AGCT 6 cut(s) 127, 134, 319, 339, 429, 628
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 401, 533
ApeKI GCWGC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 4, 346, 401
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 94, 623
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 4, 346
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 2 cut(s) 166, 219
BciT130I CCWGG 2 cut(s) 106, 182
BcnI CCSGG 1 cut(s) 199
BfaI CTAG 1 cut(s) 477
BfrI CTTAAG 1 cut(s) 629
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 3 cut(s) 106, 182, 199
Bme18I GGWCC 2 cut(s) 4, 346
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 4, 346, 401
BmiI GGNNCC 2 cut(s) 110, 157
BmrFI CCNGG 3 cut(s) 106, 182, 199
BmsI GCATC 2 cut(s) 242, 610
BpiI GAAGAC 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 274, 341
BpuMI CCSGG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 148, 181
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 3 cut(s) 41, 267, 536
Bse8I GATNNNNATC 1 cut(s) 554
BseBI CCWGG 2 cut(s) 106, 182
BseDI CCNNGG 2 cut(s) 148, 181
BseGI GGATG 2 cut(s) 233, 367
BseJI GATNNNNATC 1 cut(s) 554
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 4 cut(s) 137, 142, 560, 654
BseNI ACTGG 3 cut(s) 41, 267, 536
BseRI GAGGAG 2 cut(s) 158, 161
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 403, 535
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 2 cut(s) 403, 535
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 285
BspACI CCGC 2 cut(s) 153, 645
BspANI GGCC 2 cut(s) 403, 535
BspCNI CTCAG 4 cut(s) 136, 141, 559, 653
BspLI GGNNCC 2 cut(s) 110, 157
BspTI CTTAAG 1 cut(s) 629
BsrI ACTGG 3 cut(s) 41, 267, 536
BssECI CCNNGG 2 cut(s) 148, 181
Bst2UI CCWGG 2 cut(s) 106, 182
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 120, 179
BstAFI CTTAAG 1 cut(s) 629
BstDEI CTNAG 6 cut(s) 123, 128, 245, 335, 546, 640
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 233, 367
BstMWI GCNNNNNNNGC 4 cut(s) 215, 224, 280, 518
BstNI CCWGG 2 cut(s) 106, 182
BstSCI CCNGG 3 cut(s) 104, 180, 197
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 498
BsuRI GGCC 2 cut(s) 403, 535
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 2 cut(s) 233, 367
BtsIMutI CAGTG 2 cut(s) 274, 529
Cfr13I GGNCC 3 cut(s) 4, 346, 401
CsiI ACCWGGT 1 cut(s) 104
CviAII CATG 2 cut(s) 293, 391
DdeI CTNAG 6 cut(s) 123, 128, 245, 335, 546, 640
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 120, 179
EarI CTCTTC 2 cut(s) 120, 179
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 4, 346
Eco57I CTGAAG 2 cut(s) 120, 638
Eco88I CYCGRG 1 cut(s) 82
EcoO109I RGGNCCY 2 cut(s) 346, 401
EcoRII CCWGG 2 cut(s) 104, 180
EcoT22I ATGCAT 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 2 cut(s) 296, 394
FaiI YATR 6 cut(s) 15, 294, 392, 457, 459, 599
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 292, 390
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 220, 374
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 477
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 2 cut(s) 403, 535
HapII CCGG 1 cut(s) 198
Hin1II CATG 2 cut(s) 296, 394
HindIII AAGCTT 2 cut(s) 317, 626
HinfI GANTC 2 cut(s) 40, 423
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 94, 623
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 7 cut(s) 131, 331, 549, 575, 583, 606, 664
Hpy188III TCNNGA 3 cut(s) 84, 477, 650
Hpy8I GTNNAC 1 cut(s) 614
Hpy99I CGWCG 2 cut(s) 541, 575
HpyAV CCTTC 6 cut(s) 23, 81, 129, 154, 337, 613
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 2 cut(s) 59, 539
HpyCH4V TGCA 3 cut(s) 64, 233, 601
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 224, 280, 518
HpyF3I CTNAG 6 cut(s) 123, 128, 245, 335, 546, 640
HpySE526I ACGT 2 cut(s) 59, 539
Hsp92II CATG 2 cut(s) 296, 394
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 242, 610
MabI ACCWGGT 1 cut(s) 104
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 59, 539
MboII GAAGA 5 cut(s) 107, 166, 169, 503, 667
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 9 cut(s) 123, 151, 172, 179, 182, 392, 423, 555, 569
Mph1103I ATGCAT 1 cut(s) 603
MseI TTAA 3 cut(s) 303, 449, 630
MslI CAYNNNNRTG 2 cut(s) 269, 606
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 3 cut(s) 106, 182, 199
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 2 cut(s) 106, 182
MwoI GCNNNNNNNGC 4 cut(s) 215, 224, 280, 518
NciI CCSGG 1 cut(s) 199
NlaIII CATG 2 cut(s) 296, 394
NlaIV GGNNCC 2 cut(s) 110, 157
NsiI ATGCAT 1 cut(s) 603
OliI CACNNNNGTG 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 82
PfeI GAWTC 2 cut(s) 40, 423
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 104, 180
PspGI CCWGG 2 cut(s) 104, 180
PspN4I GGNNCC 2 cut(s) 110, 157
PspPI GGNCC 3 cut(s) 4, 346, 401
PspPPI RGGWCCY 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 269, 606
SaqAI TTAA 3 cut(s) 303, 449, 630
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 3 cut(s) 4, 346, 401
ScrFI CCNGG 3 cut(s) 106, 182, 199
SduI GDGCHC 1 cut(s) 285
SexAI ACCWGGT 1 cut(s) 104
SfaNI GCATC 2 cut(s) 242, 610
Sfr274I CTCGAG 1 cut(s) 82
SinI GGWCC 2 cut(s) 4, 346
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 269, 606
SmlI CTYRAG 4 cut(s) 82, 253, 320, 629
SmoI CTYRAG 4 cut(s) 82, 253, 320, 629
Sse9I AATT 1 cut(s) 222
SsiI CCGC 2 cut(s) 153, 645
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 3 cut(s) 104, 180, 197
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 2 cut(s) 62, 542
TaqI TCGA 1 cut(s) 83
TaqII GACCGA 1 cut(s) 66
TasI AATT 1 cut(s) 222
TfiI GAWTC 2 cut(s) 40, 423
Tru1I TTAA 3 cut(s) 303, 449, 630
Tru9I TTAA 3 cut(s) 303, 449, 630
TscAI CASTG 2 cut(s) 274, 536
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 407, 474, 544
TspRI CASTG 2 cut(s) 274, 536
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 4, 346
XbaI TCTAGA 1 cut(s) 476
XhoI CTCGAG 1 cut(s) 82
XspI CTAG 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.