Rroxscaffold_2G00108110

Monothiol glutaredoxin-S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011348
Physical Location & Seq
Reverse (-)
32108956 .. 32111298
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108110.1

Sequence Viewer

Length: 519 bp
ATGGCTAGGTCCATTTCAAATTTGCTCTTCAAGGGTCTCTCATTTTCAGGCAGCCCAGCTTCTCGTTCTTCCACTATTGCTCCTGGGCTACTTTATCTCAATGGGATGAGATACTCCACCTCTGTGCCGAATGATCCCGACACCCATGATGACTTTAAACCCACGGATAAGTTTAAGGGTTCTGGCCTTAGCTTGAAGGACATTGTTGAACGGGATGTCAAGGAAAACCCTGTAATGCTTTATATGAAAGGAGTGCCTGATTCTCCTCAATGCGGATTCAGCTCACTTGCAGTGAGAGTGTTATCACTATACCATGTTCCTTTGAGTGCTAGAAATATCTTGGAAGATCCTGAGCTGAAAAATGCTGTGAAAGCCTATAGCACCTGGCCAACATTTCCACAGATTTTCATCAAGGGGGAGTTTATTGGAGGTTCAGATATTATTCTCAATATGCATCAGAACGGTGAGCTTAAGGAAAAGCTTAAGGATATTGCAGCCAATCAGGAGAAGTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

172

Amino Acids

18.97

Weight (kDa)

6.84

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 78 - 142 1.4e-17 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 128, 341
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 2 cut(s) 470, 482
AgsI TTSAA 4 cut(s) 18, 31, 196, 209
AjnI CCWGG 2 cut(s) 82, 383
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 6 cut(s) 59, 192, 282, 355, 469, 481
AluI AGCT 6 cut(s) 59, 192, 282, 355, 469, 481
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 128, 341
AoxI GGCC 2 cut(s) 184, 386
ApeKI GCWGC 2 cut(s) 51, 494
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 388
BbvI GCAGC 2 cut(s) 63, 506
BciT130I CCWGG 2 cut(s) 84, 385
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 2 cut(s) 6, 330
BfmI CTRYAG 1 cut(s) 376
BfrI CTTAAG 2 cut(s) 470, 482
BisI GCNGC 2 cut(s) 52, 495
BlsI GCNGC 2 cut(s) 53, 496
Bme1390I CCNGG 2 cut(s) 84, 385
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 84, 385
BmsI GCATC 1 cut(s) 463
Bpu10I CCTNAGC 2 cut(s) 188, 351
BsaBI GATNNNNATC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 83, 162
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 407
BseBI CCWGG 2 cut(s) 84, 385
BseDI CCNNGG 2 cut(s) 83, 162
BseGI GGATG 2 cut(s) 111, 220
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 63, 506
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 186, 388
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 2 cut(s) 186, 388
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 133, 346
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 186, 388
BspCNI CTCAG 1 cut(s) 343
BspPI GGATC 2 cut(s) 128, 341
BspQI GCTCTTC 1 cut(s) 32
BspTI CTTAAG 2 cut(s) 470, 482
BspTNI GGTCTC 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 83, 162
BssMI GATC 2 cut(s) 133, 346
Bst2UI CCWGG 2 cut(s) 84, 385
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 2 cut(s) 470, 482
BstDEI CTNAG 2 cut(s) 188, 351
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 111, 220
BstKTI GATC 2 cut(s) 136, 349
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 133, 346
BstMWI GCNNNNNNNGC 2 cut(s) 279, 371
BstNI CCWGG 2 cut(s) 84, 385
BstSCI CCNGG 2 cut(s) 82, 383
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 63, 506
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 186, 388
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 111, 220
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 9
CviAII CATG 2 cut(s) 146, 314
DdeI CTNAG 2 cut(s) 188, 351
DpnI GATC 2 cut(s) 135, 348
DpnII GATC 2 cut(s) 133, 346
DraI TTTAAA 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 82, 383
EcoT22I ATGCAT 1 cut(s) 456
FaeI CATG 2 cut(s) 149, 317
FaiI YATR 7 cut(s) 147, 243, 245, 310, 315, 378, 452
FatI CATG 2 cut(s) 145, 313
Fnu4HI GCNGC 2 cut(s) 52, 495
FokI GGATG 2 cut(s) 118, 227
Fsp4HI GCNGC 2 cut(s) 52, 495
FspBI CTAG 2 cut(s) 6, 330
GluI GCNGC 2 cut(s) 52, 495
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 186, 388
Hin1II CATG 2 cut(s) 149, 317
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 2 cut(s) 260, 276
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 3 cut(s) 436, 459, 514
Hpy188III TCNNGA 3 cut(s) 137, 350, 503
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 3 cut(s) 290, 454, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 371
HpyF3I CTNAG 2 cut(s) 188, 351
Hsp92II CATG 2 cut(s) 149, 317
Kzo9I GATC 2 cut(s) 133, 346
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 63, 506
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 6, 330
MalI GATC 2 cut(s) 135, 348
MboI GATC 2 cut(s) 133, 346
MboII GAAGA 3 cut(s) 19, 60, 356
MflI RGATCY 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 388
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 388
MnlI CCTC 3 cut(s) 130, 276, 422
Mox20I TGGCCA 1 cut(s) 388
Mph1103I ATGCAT 1 cut(s) 456
MscI TGGCCA 1 cut(s) 388
MseI TTAA 4 cut(s) 156, 174, 471, 483
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 388
MspCI CTTAAG 2 cut(s) 470, 482
MspR9I CCNGG 2 cut(s) 84, 385
MvaI CCWGG 2 cut(s) 84, 385
MwoI GCNNNNNNNGC 2 cut(s) 279, 371
NdeII GATC 2 cut(s) 133, 346
NlaIII CATG 2 cut(s) 149, 317
NsiI ATGCAT 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 260, 276
PkrI GCNGC 2 cut(s) 53, 496
Psp6I CCWGG 2 cut(s) 82, 383
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 82, 383
PspPI GGNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 156, 174, 471, 483
SatI GCNGC 2 cut(s) 52, 495
Sau3AI GATC 2 cut(s) 133, 346
Sau96I GGNCC 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 84, 385
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 470, 482
SmoI CTYRAG 2 cut(s) 470, 482
Sse9I AATT 1 cut(s) 19
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 6, 330
StyD4I CCNGG 2 cut(s) 82, 383
TaaI ACNGT 1 cut(s) 464
TasI AATT 1 cut(s) 19
TfiI GAWTC 2 cut(s) 260, 276
Tru1I TTAA 4 cut(s) 156, 174, 471, 483
Tru9I TTAA 4 cut(s) 156, 174, 471, 483
TscAI CASTG 1 cut(s) 297
TseI GCWGC 2 cut(s) 51, 494
TspDTI ATGAA 2 cut(s) 260, 397
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 297
Vha464I CTTAAG 2 cut(s) 470, 482
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 1 cut(s) 19
XspI CTAG 2 cut(s) 6, 330
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.