Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011348

Physical Location & Seq

Genomic Coordinates Reverse (-)

5843724 .. 5846660

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G079000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCAAGGTCGCTTTCAAAGTTGCTCTGCAAGGGAATTTCATTTTCAGGCTCGGCTGCTCGTTGTGCCATAATTGCTCCTGGATCTTTTTATATCAATGGAATGAGATACTCGGCCACAGTGCCGAATGAGCCTGACGCACATGATGATTTTAAGCCCACTAATAAGCTTGAGAATTCTGGCCTTACATTGAAGGACCTTGTTGAACAGGATGTCAAGGACAATCGTGTAATGCTTTATATGAAAGGGGTGCCTGATCTTCCTCAATGTGGCTTCAGTTCACTTGCAGTAAGAGTGTTAAAACAATACAATGTTCCTTTGGGTGCCAGGAATATCTTGGAAGATCCTGAACTGAAAAGTGCTGTAAAAGCCTTCAGCCACTGGCCAACGTTTCCGCAGATATTCATCAAGGGGGAGTTCATTGGAGGGTCAGATATAATTCTCAATATGCATCAGACTGGTGAGCTCAAGGAAAAGCTTCAGGATATTTCAGCCAATCAAGAGAAGTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

172

Amino Acids

18.89

Weight (kDa)

6.83

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15660 AT3G15660
fragaria_vesca	FvH4_6g30390
malus_domestica	MD17G1204000.v1.1
prunus_persica	Prupe.3G079000_v2.0.a1 Prupe.3G079000_v2.0.a1 Prupe.8G067300_v2.0.a1 Prupe.8G067300_v2.0.a1
pyrus_communis	pycom17g20760
rosa_chinensis	RchiOBHm_Chr2g0136741
rosa_laevigata	RLG00000019568
rosa_multiflora	Rmu_sc0001299.1_g000022
rosa_roxburghii	Rroxscaffold_2G00108110
rosa_rugosa	Rorug02G0332600 Rorug02G0332700
rosa_samantha	Rh2AG383500 Rh2BG390200 Rh2CG370000 Rh2DG406800
rosa_wichuraiana	Rw2G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	250, 323
AciI	CCGC	1 cut(s)	395
AclI	AACGTT	1 cut(s)	389
AclWI	GGATC	2 cut(s)	91, 338
AcoI	YGGCCR	2 cut(s)	114, 383
AcsI	RAATTY	2 cut(s)	36, 175
AcuI	CTGAAG	3 cut(s)	259, 358, 464
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	18, 193, 206
AjnI	CCWGG	2 cut(s)	79, 326
AluBI	AGCT	3 cut(s)	169, 466, 478
AluI	AGCT	3 cut(s)	169, 466, 478
Alw21I	GWGCWC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	91, 338
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	3 cut(s)	114, 181, 383
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	36, 175
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	250, 323
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	81, 328
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	81, 328
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	252, 325
BmrFI	CCNGG	2 cut(s)	81, 328
BmsI	GCATC	1 cut(s)	460
BpuEI	CTTGAG	2 cut(s)	191, 452
BsaBI	GATNNNNATC	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	386, 463
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	2 cut(s)	81, 328
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	386, 463
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	3 cut(s)	116, 183, 385
BshNI	GGYRCC	2 cut(s)	250, 323
BsiHKAI	GWGCWC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	269
BsnI	GGCC	3 cut(s)	116, 183, 385
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	83, 256, 343
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	3 cut(s)	116, 183, 385
BspLI	GGNNCC	2 cut(s)	252, 325
BspPI	GGATC	2 cut(s)	91, 338
BspT107I	GGYRCC	2 cut(s)	250, 323
BsrI	ACTGG	2 cut(s)	386, 463
BssMI	GATC	3 cut(s)	83, 256, 343
Bst2UI	CCWGG	2 cut(s)	81, 328
Bst4CI	ACNGT	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	3 cut(s)	86, 259, 346
BstMBI	GATC	3 cut(s)	83, 256, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 130, 368
BstNI	CCWGG	2 cut(s)	81, 328
BstSCI	CCNGG	2 cut(s)	79, 326
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	83, 343
BstYI	RGATCY	2 cut(s)	83, 343
BsuRI	GGCC	3 cut(s)	116, 183, 385
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	126, 379
CaiI	CAGNNNCTG	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	146
CviAII	CATG	1 cut(s)	143
DpnI	GATC	3 cut(s)	85, 258, 345
DpnII	GATC	3 cut(s)	83, 256, 343
EaeI	YGGCCR	2 cut(s)	114, 383
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	3 cut(s)	259, 358, 464
EcoICRI	GAGCTC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	79, 326
EcoT22I	ATGCAT	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	71, 93, 144, 240, 242, 437, 449
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	116, 183, 385
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	146
HindIII	AAGCTT	2 cut(s)	167, 476
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	433, 456, 511
Hpy188III	TCNNGA	3 cut(s)	347, 482, 500
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	187, 382
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	30, 287, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 130, 368
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	83, 256, 343
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	1 cut(s)	389
MalI	GATC	3 cut(s)	85, 258, 345
MboI	GATC	3 cut(s)	83, 256, 343
MboII	GAAGA	2 cut(s)	251, 353
MflI	RGATCY	2 cut(s)	83, 343
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	4 cut(s)	36, 72, 175, 438
MluNI	TGGCCA	1 cut(s)	385
MnlI	CCTC	2 cut(s)	273, 419
Mox20I	TGGCCA	1 cut(s)	385
Mph1103I	ATGCAT	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	2 cut(s)	153, 299
Msp20I	TGGCCA	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	81, 328
MvaI	CCWGG	2 cut(s)	81, 328
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 130, 368
NdeII	GATC	3 cut(s)	83, 256, 343
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	2 cut(s)	252, 325
NmeAIII	GCCGAG	2 cut(s)	32, 92
NsiI	ATGCAT	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	477
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	468
Psp1406I	AACGTT	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	79, 326
PspGI	CCWGG	2 cut(s)	79, 326
PspN4I	GGNNCC	2 cut(s)	252, 325
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	381
PsuI	RGATCY	2 cut(s)	83, 343
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	153, 299
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	83, 256, 343
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	81, 328
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	6 cut(s)	11, 171, 201, 392, 468, 480
SfaNI	GCATC	1 cut(s)	460
SinI	GGWCC	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	170, 467
SmoI	CTYRAG	2 cut(s)	170, 467
Sse9I	AATT	4 cut(s)	36, 72, 175, 438
SsiI	CCGC	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	79, 326
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	392
TasI	AATT	4 cut(s)	36, 72, 175, 438
Tru1I	TTAA	2 cut(s)	153, 299
Tru9I	TTAA	2 cut(s)	153, 299
TscAI	CASTG	2 cut(s)	126, 386
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	30, 257, 394, 409
TspRI	CASTG	2 cut(s)	126, 386
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	2 cut(s)	36, 175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.