FvH4_6g30390

Monothiol glutaredoxin-S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011348
Physical Location & Seq
Forward (+)
23459058 .. 23462372
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30390.t1

Sequence Viewer

Length: 612 bp
CAACAGCCAGTTCAAATCACTAGACCCAAAAGCCCCTGTTCTTCCTTTCTTCCTCGTCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCAGCATCATGGCTAGGTCAATCTCAAATTTGCTCTTCAAGGCTATCACGTTTTCAGGCGTCCCAGCTTCTCCTTCTTCCACAATTGCTCCTGGGTTACTTTATCTCAATGGAATGAGATACTCCACCTCTGCGCCGAGTGATCCCGACACGCATGATGACTTTAAACCCAAGGATAAGTTTTCGAGTTCTGGCCTTAGCTTGAAGGACATTGTTGAACAGGATGTCAAGGATAACCCCGTAATGCTTTATATGAAAGGAGTGCCTAATGCTCCTCAGTGTGGATTCAGCTCACTTGCAGTCAGAGTGCTATCAGCATACCATGTTCCTTTGAGTGCTAGAAATATCTTGGAAGATCCTGAGCTGAAAAATGCCGTGAAAGCCTTTAGCAACTGGCCAACATTTCCACAGATTTTCATCAAGGGGGAGTTTATTGGAGGGTCAGATATTATTCTCAATATGCATCAGAACGGTGAGCTGAAGGAAAAGCTCAAGGATATTGCAGCTAGTCAGGAAAAGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

204

Amino Acids

22.49

Weight (kDa)

8.52

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 109 - 173 3.7e-18 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 221, 434
AcoI YGGCCR 1 cut(s) 479
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 70, 584
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 4 cut(s) 14, 124, 289, 302
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 7 cut(s) 152, 285, 375, 448, 562, 574, 590
AluI AGCT 7 cut(s) 152, 285, 375, 448, 562, 574, 590
AlwI GGATC 2 cut(s) 221, 434
AoxI GGCC 2 cut(s) 277, 479
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 569
BalI TGGCCA 1 cut(s) 481
BbvI GCAGC 1 cut(s) 599
BceAI ACGGC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 4 cut(s) 21, 99, 423, 591
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 2 cut(s) 99, 556
Bpu10I CCTNAGC 2 cut(s) 281, 444
BpuEI CTTGAG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 176, 255
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 8, 482
Bse8I GATNNNNATC 1 cut(s) 500
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 176, 255
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 3 cut(s) 374, 435, 597
BseNI ACTGG 2 cut(s) 8, 482
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 2 cut(s) 279, 481
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 279, 481
Bsp143I GATC 2 cut(s) 226, 439
BspANI GGCC 2 cut(s) 279, 481
BspCNI CTCAG 3 cut(s) 373, 436, 598
BspPI GGATC 2 cut(s) 221, 434
BspQI GCTCTTC 1 cut(s) 125
BsrI ACTGG 2 cut(s) 8, 482
BssECI CCNNGG 2 cut(s) 176, 255
BssMI GATC 2 cut(s) 226, 439
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 4 cut(s) 281, 360, 444, 606
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 229, 442
BstMBI GATC 2 cut(s) 226, 439
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 599
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BsuRI GGCC 2 cut(s) 279, 481
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 220
CseI GACGC 1 cut(s) 133
CviAII CATG 3 cut(s) 94, 239, 407
DdeI CTNAG 4 cut(s) 281, 360, 444, 606
DpnI GATC 2 cut(s) 228, 441
DpnII GATC 2 cut(s) 226, 439
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 479
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 70, 584
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 97, 242, 410
FaiI YATR 7 cut(s) 95, 240, 336, 338, 403, 408, 545
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 93, 238, 406
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 4 cut(s) 21, 99, 423, 591
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 588
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 2 cut(s) 279, 481
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 3 cut(s) 97, 242, 410
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 369
HphI GGTGA 1 cut(s) 569
Hpy188I TCNGA 4 cut(s) 389, 529, 552, 607
Hpy188III TCNNGA 3 cut(s) 230, 443, 596
HpyAV CCTTC 5 cut(s) 69, 73, 168, 283, 559
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 383, 547, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 4 cut(s) 281, 360, 444, 606
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 3 cut(s) 97, 242, 410
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 226, 439
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 178, 361
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 2 cut(s) 99, 556
MaeI CTAG 4 cut(s) 21, 99, 423, 591
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 180
MalI GATC 2 cut(s) 228, 441
MboI GATC 2 cut(s) 226, 439
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 439
MlsI TGGCCA 1 cut(s) 481
MluCI AATT 2 cut(s) 112, 168
MluNI TGGCCA 1 cut(s) 481
MnlI CCTC 4 cut(s) 63, 223, 369, 515
Mox20I TGGCCA 1 cut(s) 481
Mph1103I ATGCAT 1 cut(s) 549
MscI TGGCCA 1 cut(s) 481
MseI TTAA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 2 cut(s) 226, 439
NlaIII CATG 3 cut(s) 97, 242, 410
NmeAIII GCCGAG 1 cut(s) 246
NsiI ATGCAT 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 369
PkrI GCNGC 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 439
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 2 cut(s) 226, 439
ScrFI CCNGG 1 cut(s) 177
SfaNI GCATC 2 cut(s) 99, 556
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 2 cut(s) 112, 168
SspMI CTAG 4 cut(s) 21, 99, 423, 591
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 112, 168
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 368
TseI GCWGC 1 cut(s) 587
TspDTI ATGAA 2 cut(s) 353, 490
TspRI CASTG 1 cut(s) 368
XapI RAATTY 1 cut(s) 112
XspI CTAG 4 cut(s) 21, 99, 423, 591
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.