Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001299.1

Orthogroup ID

OG0011348

Physical Location & Seq

Genomic Coordinates Reverse (-)

127322 .. 131993

Gene Structure 4672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001299.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggtgaaccggtggaatatttgctgcgggttggatggagcttccggtggccagttcggtaggtttccgaccagttcttggggtggctcctccggttctggactcctgagatcgaatgcttcaaggtgtgaggtggaggcagaaaaggcttcaaggttttgtattcggattcaagaccagacaaaggcgatggacggcggcgtgggcttggggagactgtggcttcttctgcgacggcattgggctctcgaccaaggttttcgaaggcttcggagggcaacgatgattgggccggtggttgagactagtttgatggaggtcagtgcggcggaaggctacgggcaggaagaaggtccggaaagatgcatgggaaaccctagttttgaactagggttgattgccttgaccctcaagaagagcctgaagagcaacctgttgccgatgtttttggctactgaggaggctgaagatggttcaatcgaacagaagtacatagcagacggacagcagccagttccaggcggaaaagtactgttggttcttccttccatcttcttcttcttcttcttcttcagcatggctaggtctatttcaaatttgctcttcaagggtctctcattttcaagcgtcccagcttctcgttcttccacaattgctcctgggctactttatctcaatggaatgagatactccacctctgtgccgaatgatcccgatacgcatgatgactttaaacccacggataagtttaagggttctggccttagcttgaaggacatcgttgaacgggatgtcaaggaaaaccctgtaatgctttatatgaaaggagtgcctgattctcctcaatgcggattcagctcacttgcagtgagagtgttatcactataccatgttcctttgagtgctagaaatatcttggaagatcctgagctgaaaaatgctgtgaaagcctatagcacctggccaacatttccacagattttcatcaagggggagtttattggaggttcagatattattctcaatatgcatcagaacggtgagcttaaggaaaagcttaaggatattgcagccaatcaggagaagtctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

364

Amino Acids

40.05

Weight (kDa)

7.58

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15660 AT3G15660
fragaria_vesca	FvH4_6g30390
malus_domestica	MD17G1204000.v1.1
prunus_persica	Prupe.3G079000_v2.0.a1 Prupe.3G079000_v2.0.a1 Prupe.8G067300_v2.0.a1 Prupe.8G067300_v2.0.a1
pyrus_communis	pycom17g20760
rosa_chinensis	RchiOBHm_Chr2g0136741
rosa_laevigata	RLG00000019568
rosa_multiflora	Rmu_sc0001299.1_g000022
rosa_roxburghii	Rroxscaffold_2G00108110
rosa_rugosa	Rorug02G0332600 Rorug02G0332700
rosa_samantha	Rh2AG383500 Rh2BG390200 Rh2CG370000 Rh2DG406800
rosa_wichuraiana	Rw2G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	6 cut(s)	27, 198, 326, 329, 522, 849
AclWI	GGATC	2 cut(s)	704, 917
AcoI	YGGCCR	2 cut(s)	49, 962
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	3 cut(s)	443, 486, 556
AfaI	GTAC	2 cut(s)	491, 531
AfiI	CCNNNNNNNGG	4 cut(s)	78, 184, 518, 848
AflII	CTTAAG	2 cut(s)	1046, 1058
AgeI	ACCGGT	1 cut(s)	9
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	3 cut(s)	517, 658, 959
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	7 cut(s)	41, 635, 768, 858, 931, 1045, 1057
AluI	AGCT	7 cut(s)	41, 635, 768, 858, 931, 1045, 1057
Alw26I	GTCTC	3 cut(s)	208, 296, 617
AlwI	GGATC	2 cut(s)	704, 917
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	4 cut(s)	49, 290, 760, 962
ApeKI	GCWGC	3 cut(s)	24, 508, 1070
ApoI	RAATTY	1 cut(s)	595
AsiGI	ACCGGT	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	290, 353
AsuHPI	GGTGA	2 cut(s)	16, 1052
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	2 cut(s)	51, 964
BanII	GRGCYC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	11, 520, 1082
BccI	CCATC	5 cut(s)	29, 184, 307, 464, 557
BceAI	ACGGC	2 cut(s)	211, 251
BciT130I	CCWGG	3 cut(s)	519, 660, 961
BcoDI	GTCTC	3 cut(s)	208, 296, 617
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	5 cut(s)	306, 378, 389, 582, 906
BfmI	CTRYAG	1 cut(s)	952
BfrI	CTTAAG	2 cut(s)	1046, 1058
BisI	GCNGC	5 cut(s)	25, 199, 327, 509, 1071
BlsI	GCNGC	5 cut(s)	26, 200, 328, 510, 1072
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	3 cut(s)	519, 660, 961
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	290, 353
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	3 cut(s)	519, 660, 961
BmsI	GCATC	2 cut(s)	353, 1039
Bpu10I	CCTNAGC	2 cut(s)	764, 927
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	983
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	253, 659, 738
BsaWI	WCCGGW	4 cut(s)	9, 44, 92, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 184, 518, 848
Bse118I	RCCGGY	2 cut(s)	9, 292
Bse1I	ACTGG	3 cut(s)	52, 72, 512
Bse8I	GATNNNNATC	1 cut(s)	983
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	3 cut(s)	519, 660, 961
BseDI	CCNNGG	3 cut(s)	253, 659, 738
BseGI	GGATG	2 cut(s)	40, 796
BseJI	GATNNNNATC	1 cut(s)	983
BseLI	CCNNNNNNNGG	4 cut(s)	78, 184, 518, 848
BseMII	CTCAG	3 cut(s)	98, 447, 918
BseNI	ACTGG	3 cut(s)	52, 72, 512
BseRI	GAGGAG	3 cut(s)	79, 473, 831
BseXI	GCAGC	3 cut(s)	11, 520, 1082
BseYI	CCCAGC	1 cut(s)	631
BshFI	GGCC	4 cut(s)	51, 292, 762, 964
BshTI	ACCGGT	1 cut(s)	9
BsiSI	CCGG	5 cut(s)	10, 45, 93, 293, 356
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	4 cut(s)	78, 184, 518, 848
BsmAI	GTCTC	3 cut(s)	208, 296, 617
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	4 cut(s)	51, 292, 762, 964
Bso31I	GGTCTC	1 cut(s)	617
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	110, 709, 922
BspACI	CCGC	6 cut(s)	27, 198, 326, 329, 522, 849
BspANI	GGCC	4 cut(s)	51, 292, 762, 964
BspCNI	CTCAG	3 cut(s)	99, 448, 919
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	2 cut(s)	704, 917
BspQI	GCTCTTC	3 cut(s)	410, 419, 608
BspT104I	TTCGAA	1 cut(s)	262
BspTI	CTTAAG	2 cut(s)	1046, 1058
BspTNI	GGTCTC	1 cut(s)	617
BsrFI	RCCGGY	2 cut(s)	9, 292
BsrI	ACTGG	3 cut(s)	52, 72, 512
BssAI	RCCGGY	2 cut(s)	9, 292
BssECI	CCNNGG	3 cut(s)	253, 659, 738
BssMI	GATC	3 cut(s)	110, 709, 922
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	3 cut(s)	519, 660, 961
Bst4CI	ACNGT	3 cut(s)	219, 534, 1040
Bst6I	CTCTTC	3 cut(s)	410, 419, 608
BstAFI	CTTAAG	2 cut(s)	1046, 1058
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	4 cut(s)	107, 456, 764, 927
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	2 cut(s)	40, 796
BstKTI	GATC	3 cut(s)	113, 712, 925
BstMAI	GTCTC	3 cut(s)	208, 296, 617
BstMBI	GATC	3 cut(s)	110, 709, 922
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 204, 229, 426, 855, 947
BstNI	CCWGG	3 cut(s)	519, 660, 961
BstSCI	CCNGG	3 cut(s)	517, 658, 959
BstSFI	CTRYAG	1 cut(s)	952
BstV1I	GCAGC	3 cut(s)	11, 520, 1082
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	4 cut(s)	51, 292, 762, 964
BtgI	CCRYGG	1 cut(s)	738
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	40, 796
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	2 cut(s)	328, 873
Cfr10I	RCCGGY	2 cut(s)	9, 292
Cfr13I	GGNCC	2 cut(s)	290, 353
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	490, 530
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	4 cut(s)	367, 577, 722, 890
CviQI	GTAC	2 cut(s)	490, 530
DdeI	CTNAG	4 cut(s)	107, 456, 764, 927
DpnI	GATC	3 cut(s)	112, 711, 924
DpnII	GATC	3 cut(s)	110, 709, 922
DraI	TTTAAA	1 cut(s)	733
EaeI	YGGCCR	2 cut(s)	49, 962
Eam1104I	CTCTTC	3 cut(s)	410, 419, 608
EarI	CTCTTC	3 cut(s)	410, 419, 608
EciI	GGCGGA	2 cut(s)	344, 537
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	3 cut(s)	443, 486, 556
EcoRII	CCWGG	3 cut(s)	517, 658, 959
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	2 cut(s)	368, 1032
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	4 cut(s)	370, 580, 725, 893
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	4 cut(s)	366, 576, 721, 889
FauI	CCCGC	1 cut(s)	20
Fnu4HI	GCNGC	5 cut(s)	25, 199, 327, 509, 1071
FokI	GGATG	2 cut(s)	47, 803
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	5 cut(s)	25, 199, 327, 509, 1071
FspBI	CTAG	5 cut(s)	306, 378, 389, 582, 906
GluI	GCNGC	5 cut(s)	25, 199, 327, 509, 1071
GsaI	CCCAGC	1 cut(s)	635
HaeIII	GGCC	4 cut(s)	51, 292, 762, 964
HapII	CCGG	5 cut(s)	10, 45, 93, 293, 356
HgaI	GACGC	1 cut(s)	616
Hin1II	CATG	4 cut(s)	370, 580, 725, 893
HindIII	AAGCTT	1 cut(s)	1055
HinfI	GANTC	4 cut(s)	102, 169, 836, 852
HpaII	CCGG	5 cut(s)	10, 45, 93, 293, 356
HphI	GGTGA	2 cut(s)	16, 1052
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	6 cut(s)	69, 168, 273, 1012, 1035, 1090
Hpy188III	TCNNGA	9 cut(s)	99, 106, 173, 248, 356, 412, 713, 926, 1079
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	5 cut(s)	258, 326, 344, 555, 766
HpyCH4III	ACNGT	3 cut(s)	219, 534, 1040
HpyCH4V	TGCA	4 cut(s)	366, 866, 1030, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 204, 229, 426, 855, 947
HpyF3I	CTNAG	4 cut(s)	107, 456, 764, 927
Hsp92II	CATG	4 cut(s)	370, 580, 725, 893
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	110, 709, 922
LguI	GCTCTTC	3 cut(s)	410, 419, 608
LmnI	GCTCC	3 cut(s)	38, 92, 661
Lsp1109I	GCAGC	3 cut(s)	11, 520, 1082
LweI	GCATC	2 cut(s)	353, 1039
MaeI	CTAG	5 cut(s)	306, 378, 389, 582, 906
MalI	GATC	3 cut(s)	112, 711, 924
MboI	GATC	3 cut(s)	110, 709, 922
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	2 cut(s)	51, 964
MluCI	AATT	2 cut(s)	595, 651
MluNI	TGGCCA	2 cut(s)	51, 964
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	12, 92
Mox20I	TGGCCA	2 cut(s)	51, 964
Mph1103I	ATGCAT	2 cut(s)	368, 1032
MroI	TCCGGA	1 cut(s)	355
MscI	TGGCCA	2 cut(s)	51, 964
MseI	TTAA	4 cut(s)	732, 750, 1047, 1059
MslI	CAYNNNNRTG	1 cut(s)	698
Msp20I	TGGCCA	2 cut(s)	51, 964
MspCI	CTTAAG	2 cut(s)	1046, 1058
MspI	CCGG	5 cut(s)	10, 45, 93, 293, 356
MspR9I	CCNGG	3 cut(s)	519, 660, 961
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	3 cut(s)	519, 660, 961
MwoI	GCNNNNNNNGC	6 cut(s)	146, 204, 229, 426, 855, 947
NdeII	GATC	3 cut(s)	110, 709, 922
NlaIII	CATG	4 cut(s)	370, 580, 725, 893
NlaIV	GGNNCC	1 cut(s)	88
NsiI	ATGCAT	2 cut(s)	368, 1032
NspV	TTCGAA	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	698
PciSI	GCTCTTC	3 cut(s)	410, 419, 608
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	169, 836, 852
PflMI	CCANNNNNTGG	1 cut(s)	78
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	26, 200, 328, 510, 1072
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	517, 658, 959
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	3 cut(s)	517, 658, 959
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	290, 353
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PsuI	RGATCY	1 cut(s)	922
RsaI	GTAC	2 cut(s)	491, 531
RsaNI	GTAC	2 cut(s)	490, 530
RseI	CAYNNNNRTG	1 cut(s)	698
SapI	GCTCTTC	3 cut(s)	410, 419, 608
SaqAI	TTAA	4 cut(s)	732, 750, 1047, 1059
SatI	GCNGC	5 cut(s)	25, 199, 327, 509, 1071
Sau3AI	GATC	3 cut(s)	110, 709, 922
Sau96I	GGNCC	2 cut(s)	290, 353
ScaI	AGTACT	1 cut(s)	531
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	3 cut(s)	519, 660, 961
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	353, 1039
SfcI	CTRYAG	1 cut(s)	952
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	3 cut(s)	410, 1046, 1058
SmoI	CTYRAG	3 cut(s)	410, 1046, 1058
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	2 cut(s)	595, 651
SsiI	CCGC	6 cut(s)	27, 198, 326, 329, 522, 849
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	5 cut(s)	306, 378, 389, 582, 906
StyD4I	CCNGG	3 cut(s)	517, 658, 959
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	219, 534, 1040
TaqI	TCGA	4 cut(s)	113, 249, 262, 480
TasI	AATT	2 cut(s)	595, 651
TatI	WGTACW	2 cut(s)	489, 529
TauI	GCSGC	2 cut(s)	201, 329
TfiI	GAWTC	3 cut(s)	169, 836, 852
Tru1I	TTAA	4 cut(s)	732, 750, 1047, 1059
Tru9I	TTAA	4 cut(s)	732, 750, 1047, 1059
TscAI	CASTG	2 cut(s)	328, 873
TseI	GCWGC	3 cut(s)	24, 508, 1070
TspDTI	ATGAA	2 cut(s)	836, 973
TspGWI	ACGGA	2 cut(s)	516, 755
TspRI	CASTG	2 cut(s)	328, 873
Van91I	CCANNNNNTGG	1 cut(s)	78
Vha464I	CTTAAG	2 cut(s)	1046, 1058
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	595
XspI	CTAG	5 cut(s)	306, 378, 389, 582, 906
ZrmI	AGTACT	1 cut(s)	531
Zsp2I	ATGCAT	2 cut(s)	368, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.