Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007601

Physical Location & Seq

Genomic Coordinates Forward (+)

5339992 .. 5341339

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGCAGTAGTTGTTTGGCTTGTTTTGATAAGTCGAAAGCAAAAACAAGTGTAGATGTGCCTTTGAATGGCACAAAAGATGTGTTAGTAGAAGAAGATTGGAGTGAATTGAGGAAGCCTAGTGTAGTAGCTTCTGAAGATTTCTGGACTAATACCACTTTAGATATGGAAAGCAATGCTCACGGAAGTGTTTCTTCAATCAGTACAACCAATCTGACTATTGATTCTCAAGGATGTGGTTCCAGCTCTAATGAACCTGCTGAATTTGTTAACCATGGTCTTGTGCTATGGAATCAAACTCGGCAGCAATGGGTGGGAGATAAAAGATCCGAGAGCCGTAAAAGCGTTGGTCGAGAACCGATTCTAAATGAGAATGTGACTTATGAGAGTCTACTTGGGAGCAACAAGCGATTTCCGAGGCCTATACCTCTTGATGAAATGGTGCAGTTTCTTGTTGAAGTTTGGGAAGAAGAAGGTCTATACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

162

Amino Acids

18.02

Weight (kDa)

4.65

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
clamp_Gag1-like	PF13259	55 - 120	5.3e-11	Gag1-like, clamp domain
clamp_Gag1-like	PF13259	125 - 161	1.9e-10	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15770 AT3G15770
fragaria_vesca	FvH4_6g29900
malus_domestica	MD09G1232100.v1.1 MD17G1209500.v1.1
prunus_persica	Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1
pyrus_communis	pycom17g21510
rosa_chinensis	RchiOBHm_Chr2g0135801
rosa_laevigata	RLG00000019486
rosa_multiflora	Rmu_sc0007848.1_g000016
rosa_roxburghii	Rroxscaffold_2G00108820
rosa_rugosa	Rorug02G0326300 Rorug02G0326400 Rorug02G0326400 Rorug02G0326500 Rorug02G0326600
rosa_samantha	Rh2AG378100 Rh2BG384400 Rh2CG363900 Rh2DG400900
rosa_wichuraiana	Rw2G030800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	67, 198, 458
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	131, 246
AluI	AGCT	2 cut(s)	131, 246
AlwI	GGATC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	2 cut(s)	190, 360
BbvI	GCAGC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	274, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	181, 314
BseDI	CCNNGG	2 cut(s)	274, 416
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	181, 314
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	326
Bsp19I	CCATGG	1 cut(s)	274
BspANI	GGCC	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	321
BsrDI	GCAATG	2 cut(s)	181, 314
BssECI	CCNNGG	2 cut(s)	274, 416
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	239
BstKTI	GATC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	239
BveI	ACCTGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	7 cut(s)	20, 118, 131, 246, 336, 421, 486
CviKI_1	RGCY	7 cut(s)	20, 118, 131, 246, 336, 421, 486
CviQI	GTAC	1 cut(s)	204
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	1 cut(s)	278
FaiI	YATR	6 cut(s)	167, 276, 289, 384, 425, 481
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FatI	CATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	224, 292, 361, 388
HpaI	GTTAAC	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	271, 392
Hpy188I	TCNGA	4 cut(s)	136, 216, 331, 417
Hpy188III	TCNNGA	3 cut(s)	145, 353, 431
Hpy8I	GTNNAC	2 cut(s)	271, 392
HpyAV	CCTTC	1 cut(s)	467
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	278
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	399
LpnPI	CCDG	3 cut(s)	130, 256, 270
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	6 cut(s)	104, 107, 149, 186, 479, 482
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	2 cut(s)	107, 263
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	3 cut(s)	105, 411, 438
MroXI	GAANNNNTTC	2 cut(s)	190, 360
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	190, 360
PfeI	GAWTC	3 cut(s)	224, 292, 361
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	397
SetI	ASST	5 cut(s)	133, 248, 259, 430, 478
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	107, 263
SseBI	AGGCCT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	274
TaqI	TCGA	2 cut(s)	35, 352
TasI	AATT	2 cut(s)	107, 263
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	224, 292, 361
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	267, 450
TspGWI	ACGGA	1 cut(s)	198
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	391
XmnI	GAANNNNTTC	2 cut(s)	190, 360
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.