Rh2DG400900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007601
Physical Location & Seq
Reverse (-)
58370767 .. 58374101
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG400900.1

Sequence Viewer

Length: 471 bp
ATGGGTGGTTGTCTAGCATGCCTAACTAAAACCAAACAGGAAACCTCAGTGAATGAGCCACTGAAAGAAAGATCAAATAAAAATCTGACAGAAAGGAAACCTAGTATATCAGAGGACTTCTGGACCACCAGCACGTGGGATATGGACAATAGTGCAGTTCTGTCACAAGGAAGCATATCGTCAATCAGCACAAACCAGACCCTTGATCCGCATGGTGGTTCTGGCAGCAGTAGTGCCCCTTCTGAATTTGTAAATCATGGTCTTCTTCTCTGGAACCAGACTAGGCAGCGTTGGGTAGGGAGTAAAAAGCCTGAGAAGCAGCCACAGCAAATTCGGGAACCCAAATTAAGTTGGAATGCAACATATGAAAATTTACTGGGGAGTAACAAGCCTTTCACACAGCCTATCCCTCTCTCTGAAATGGTAGATTTTCTAGTGGACAATTGGGAGCAAGAAGGATTGTACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

5.23

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 45 - 156 7.1e-28 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 3 cut(s) 245, 330, 370
AcvI CACGTG 1 cut(s) 135
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 135, 215
AlwI GGATC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 225, 286, 319
ApoI RAATTY 3 cut(s) 245, 330, 370
AspS9I GGNCC 1 cut(s) 123
AvaII GGWCC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbrPI CACGTG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 237, 298, 331
BfaI CTAG 4 cut(s) 14, 102, 282, 434
BisI GCNGC 3 cut(s) 226, 287, 320
BlsI GCNGC 3 cut(s) 227, 288, 321
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 275, 339
BmrI ACTGGG 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 215
Bse1I ACTGG 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 135, 215
BseMII CTCAG 2 cut(s) 60, 303
BseNI ACTGG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 3 cut(s) 237, 298, 331
BsgI GTGCAG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 135, 215
BsmI GAATGC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 71, 205
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 59, 304
BspLI GGNNCC 2 cut(s) 275, 339
BspPI GGATC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 381
BssMI GATC 2 cut(s) 71, 205
BstBAI YACGTR 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 46, 312
BstKTI GATC 2 cut(s) 74, 208
BstMBI GATC 2 cut(s) 71, 205
BstMWI GCNNNNNNNGC 2 cut(s) 316, 325
BstNSI RCATGY 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 238
BstV1I GCAGC 3 cut(s) 237, 298, 331
BstV2I GAAGAC 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 54, 59
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 463
CviAII CATG 3 cut(s) 18, 212, 257
CviJI RGCY 5 cut(s) 58, 310, 322, 391, 403
CviKI_1 RGCY 5 cut(s) 58, 310, 322, 391, 403
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 46, 312
DpnI GATC 2 cut(s) 73, 207
DpnII GATC 2 cut(s) 71, 205
Eco47I GGWCC 1 cut(s) 123
Eco72I CACGTG 1 cut(s) 135
FaeI CATG 3 cut(s) 21, 215, 260
FaiI YATR 8 cut(s) 19, 107, 143, 176, 213, 258, 364, 366
FatI CATG 3 cut(s) 17, 211, 256
FauNDI CATATG 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 226, 287, 320
Fsp4HI GCNGC 3 cut(s) 226, 287, 320
FspBI CTAG 4 cut(s) 14, 102, 282, 434
GluI GCNGC 3 cut(s) 226, 287, 320
Hin1II CATG 3 cut(s) 21, 215, 260
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 87, 112, 244, 418
Hpy188III TCNNGA 3 cut(s) 121, 271, 335
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 249, 449
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 155, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 325
HpyF3I CTNAG 2 cut(s) 46, 312
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 3 cut(s) 21, 215, 260
Kzo9I GATC 2 cut(s) 71, 205
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 9 cut(s) 23, 106, 142, 207, 209, 256, 290, 324, 362
Lsp1109I GCAGC 3 cut(s) 237, 298, 331
MaeI CTAG 4 cut(s) 14, 102, 282, 434
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 162, 383
MalI GATC 2 cut(s) 73, 207
MboI GATC 2 cut(s) 71, 205
MboII GAAGA 2 cut(s) 254, 257
MfeI CAATTG 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 5 cut(s) 245, 330, 344, 370, 442
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 3 cut(s) 55, 106, 420
MseI TTAA 1 cut(s) 347
MunI CAATTG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 316, 325
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 71, 205
NlaIII CATG 3 cut(s) 21, 215, 260
NlaIV GGNNCC 2 cut(s) 275, 339
NmuCI GTSAC 1 cut(s) 162
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PctI GAATGC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 3 cut(s) 227, 288, 321
PmaCI CACGTG 1 cut(s) 135
PmlI CACGTG 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 135
PspCI CACGTG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 275, 339
PspPI GGNCC 1 cut(s) 123
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 3 cut(s) 226, 287, 320
Sau3AI GATC 2 cut(s) 71, 205
Sau96I GGNCC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 238
SetI ASST 3 cut(s) 47, 103, 137
SinI GGWCC 1 cut(s) 123
SphI GCATGC 1 cut(s) 21
Sse9I AATT 5 cut(s) 245, 330, 344, 370, 442
SsiI CCGC 1 cut(s) 209
SspMI CTAG 4 cut(s) 14, 102, 282, 434
TaiI ACGT 1 cut(s) 137
TasI AATT 5 cut(s) 245, 330, 344, 370, 442
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 54, 66
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 3 cut(s) 225, 286, 319
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 2 cut(s) 54, 66
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 3 cut(s) 245, 330, 370
XceI RCATGY 1 cut(s) 21
XspI CTAG 4 cut(s) 14, 102, 282, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.