Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007601

Physical Location & Seq

Genomic Coordinates Forward (+)

6280169 .. 6283636

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G085100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATGGGAGCAGTGGCTGTCTAGCATGCCATGGTAAGACCACACTGAAAAATTCAGTGAATGAGCCACCAAAAGGATTATTAAACGAAAGTCGGACAATAAATAAACCAAGCATATCAGAGGACTTCTGGACCACCAGCACGTGGGATATGGACAACAGTGCAGTTCAGTCGCAAGGAAGCATGTCATCAATCAGCACAAACCAGACGCTTGATCCACATGGTGGCTCTGGCAGCAATACCACCCCTTCTGAGTTTGTAAATCATGGTCTTCTTCTCTGGAACCAGACTAGGCAGCGTTGGGTAGGGAATAAAAAGTCTGAGAGCCCGGCAAAGCAAATTCGAGAACCCAAATTAAGTTGGAATGCGTCGTATGAAAGTTTACTTGGGAGTAACAAGCCTTTCCCTCAGCCTATTCCTCTCCCTGAAATGGTAGATTTTCTTGTTGACGTTTGGGAGCAAGAGGGGTTATACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

160

Amino Acids

17.61

Weight (kDa)

5.53

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15770 AT3G15770
fragaria_vesca	FvH4_6g29900
malus_domestica	MD09G1232100.v1.1 MD17G1209500.v1.1
prunus_persica	Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1
pyrus_communis	pycom17g21510
rosa_chinensis	RchiOBHm_Chr2g0135801
rosa_laevigata	RLG00000019486
rosa_multiflora	Rmu_sc0007848.1_g000016
rosa_roxburghii	Rroxscaffold_2G00108820
rosa_rugosa	Rorug02G0326300 Rorug02G0326400 Rorug02G0326400 Rorug02G0326500 Rorug02G0326600
rosa_samantha	Rh2AG378100 Rh2BG384400 Rh2CG363900 Rh2DG400900
rosa_wichuraiana	Rw2G030800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	144, 224
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	52, 339
AcvI	CACGTG	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	4 cut(s)	74, 144, 224, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	234, 295
ApoI	RAATTY	2 cut(s)	52, 339
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	329
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	246, 307
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	23, 291
BisI	GCNGC	2 cut(s)	235, 296
BlsI	GCNGC	2 cut(s)	236, 297
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 144, 224, 430
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	4 cut(s)	74, 144, 224, 430
BseMII	CTCAG	3 cut(s)	243, 312, 422
BseXI	GCAGC	2 cut(s)	246, 307
BsgI	GTGCAG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	4 cut(s)	74, 144, 224, 430
BsmI	GAATGC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	244, 313, 421
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	252, 321, 408
BstDSI	CCRYGG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	30, 187
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	246, 307
BstV2I	GAAGAC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	4 cut(s)	19, 44, 63, 166
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	2 cut(s)	217, 357
CviAII	CATG	6 cut(s)	5, 27, 32, 184, 221, 266
CviJI	RGCY	6 cut(s)	18, 67, 228, 327, 400, 412
CviKI_1	RGCY	6 cut(s)	18, 67, 228, 327, 400, 412
DdeI	CTNAG	3 cut(s)	252, 321, 408
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	6 cut(s)	8, 30, 35, 187, 224, 269
FatI	CATG	6 cut(s)	4, 26, 31, 183, 220, 265
Fnu4HI	GCNGC	2 cut(s)	235, 296
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	235, 296
FspBI	CTAG	2 cut(s)	23, 291
GluI	GCNGC	2 cut(s)	235, 296
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	2 cut(s)	217, 357
Hin1II	CATG	6 cut(s)	8, 30, 35, 187, 224, 269
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	383, 448
Hpy188I	TCNGA	4 cut(s)	96, 121, 253, 322
Hpy188III	TCNNGA	3 cut(s)	130, 280, 344
Hpy8I	GTNNAC	2 cut(s)	383, 448
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	2 cut(s)	143, 450
HpyCH4V	TGCA	2 cut(s)	4, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	3 cut(s)	252, 321, 408
HpySE526I	ACGT	2 cut(s)	143, 450
Hsp92II	CATG	6 cut(s)	8, 30, 35, 187, 224, 269
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	9, 457
LpnPI	CCDG	8 cut(s)	115, 151, 216, 218, 265, 299, 342, 438
Lsp1109I	GCAGC	2 cut(s)	246, 307
MaeI	CTAG	2 cut(s)	23, 291
MaeII	ACGT	2 cut(s)	143, 450
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	263, 266
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	3 cut(s)	52, 339, 353
MmeI	TCCRAC	2 cut(s)	74, 341
MnlI	CCTC	4 cut(s)	115, 417, 429, 457
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	83, 356
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	6 cut(s)	8, 30, 35, 187, 224, 269
NlaIV	GGNNCC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	30, 187
PaeI	GCATGC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	370
PflMI	CCANNNNNTGG	2 cut(s)	144, 224
PkrI	GCNGC	2 cut(s)	236, 297
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	83, 356
SatI	GCNGC	2 cut(s)	235, 296
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	2 cut(s)	146, 453
SinI	GGWCC	1 cut(s)	132
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	3 cut(s)	52, 339, 353
SspMI	CTAG	2 cut(s)	23, 291
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	2 cut(s)	146, 453
TaqI	TCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	52, 339, 353
Tru1I	TTAA	2 cut(s)	83, 356
Tru9I	TTAA	2 cut(s)	83, 356
TscAI	CASTG	4 cut(s)	19, 51, 63, 166
TseI	GCWGC	2 cut(s)	234, 295
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	4 cut(s)	19, 51, 63, 166
Van91I	CCANNNNNTGG	2 cut(s)	144, 224
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	52, 339
XceI	RCATGY	2 cut(s)	30, 187
XspI	CTAG	2 cut(s)	23, 291
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.