Rw2G030800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007601
Physical Location & Seq
Reverse (-)
50607605 .. 50610744
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030800.1

Sequence Viewer

Length: 522 bp
ATGCATGGGAGCAGTGGTTGTCTAGCATGCCTAACTAAAACCAAACAGGAAACCTCAGTGAATGAGCCACTGAAAGAAAGATCAAATAAAAATCTGACAGAAAGGAAACCTAGTATATCAGAGGACTTCTGGACCACCAGCACGTGGGATATGGACAATAGTGCAGTTCTGTCACAAGGAAGCATATCGTCAATCAGCACAAACCAGACCCTTGATCCGCATGGTGGTTCTGGCAGCAGTAGTGCCCCTTCTGAATTTGTAAATCATGGTCTTCTTCTCTGGAACCAGACTAGGCAACGTTGGGTAGGGAGTAAAAAGCCTGAGAAGCAGCCACAGCAAATTCGGGAACCCAAATTAAGAACTCTTTGTTTCAGCATCGTTAAATCATTCTGCCTTTGCAGTTGGAATGCAACATATGAAAATTTACTGGGGAGTAACAAGCCTTTCACACAGCCTATCCCTCTCTCTGAAATGGTAGATTTTCTAGTGGACAATTGGGAGCAAGAAGGATTGTACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

5.94

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 48 - 173 4e-29 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 218
AclI AACGTT 1 cut(s) 298
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 3 cut(s) 254, 339, 421
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 144, 224
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 234, 328
ApoI RAATTY 3 cut(s) 254, 339, 421
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 246, 340
BfaI CTAG 4 cut(s) 23, 111, 291, 485
BisI GCNGC 2 cut(s) 235, 329
BlsI GCNGC 2 cut(s) 236, 330
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 284, 348
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 144
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 224
Bse1I ACTGG 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 144, 224
BseMII CTCAG 2 cut(s) 69, 312
BseNI ACTGG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 2 cut(s) 246, 340
BsgI GTGCAG 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 144, 224
BsmI GAATGC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 80, 214
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 68, 313
BspLI GGNNCC 2 cut(s) 284, 348
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 432
BssMI GATC 2 cut(s) 80, 214
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 55, 321
BstKTI GATC 2 cut(s) 83, 217
BstMBI GATC 2 cut(s) 80, 214
BstMWI GCNNNNNNNGC 2 cut(s) 325, 334
BstNSI RCATGY 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 246, 340
BstV2I GAAGAC 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 63, 68
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 514
CviAII CATG 4 cut(s) 5, 27, 221, 266
CviJI RGCY 5 cut(s) 67, 319, 331, 442, 454
CviKI_1 RGCY 5 cut(s) 67, 319, 331, 442, 454
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 2 cut(s) 55, 321
DpnI GATC 2 cut(s) 82, 216
DpnII GATC 2 cut(s) 80, 214
Eco47I GGWCC 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 30, 224, 269
FaiI YATR 9 cut(s) 6, 28, 116, 152, 185, 222, 267, 415, 417
FatI CATG 4 cut(s) 4, 26, 220, 265
FauNDI CATATG 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 235, 329
Fsp4HI GCNGC 2 cut(s) 235, 329
FspBI CTAG 4 cut(s) 23, 111, 291, 485
GluI GCNGC 2 cut(s) 235, 329
Hin1II CATG 4 cut(s) 8, 30, 224, 269
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 4 cut(s) 96, 121, 253, 469
Hpy188III TCNNGA 3 cut(s) 130, 280, 344
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 258, 500
HpyCH4IV ACGT 2 cut(s) 143, 298
HpyCH4V TGCA 4 cut(s) 4, 164, 399, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 334
HpyF3I CTNAG 2 cut(s) 55, 321
HpySE526I ACGT 2 cut(s) 143, 298
Hsp92II CATG 4 cut(s) 8, 30, 224, 269
Kzo9I GATC 2 cut(s) 80, 214
LmnI GCTCC 2 cut(s) 9, 499
LpnPI CCDG 9 cut(s) 32, 115, 151, 216, 218, 265, 299, 333, 413
Lsp1109I GCAGC 2 cut(s) 246, 340
LweI GCATC 1 cut(s) 384
MaeI CTAG 4 cut(s) 23, 111, 291, 485
MaeII ACGT 2 cut(s) 143, 298
MaeIII GTNAC 2 cut(s) 171, 434
MalI GATC 2 cut(s) 82, 216
MboI GATC 2 cut(s) 80, 214
MboII GAAGA 2 cut(s) 263, 266
MfeI CAATTG 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 5 cut(s) 254, 339, 353, 421, 493
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 3 cut(s) 64, 115, 471
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 356, 381
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 325, 334
NdeI CATATG 1 cut(s) 415
NdeII GATC 2 cut(s) 80, 214
NlaIII CATG 4 cut(s) 8, 30, 224, 269
NlaIV GGNNCC 2 cut(s) 284, 348
NmuCI GTSAC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 30
PaeI GCATGC 1 cut(s) 30
PctI GAATGC 1 cut(s) 412
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 2 cut(s) 236, 330
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 298
PspCI CACGTG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 284, 348
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SaqAI TTAA 2 cut(s) 356, 381
SatI GCNGC 2 cut(s) 235, 329
Sau3AI GATC 2 cut(s) 80, 214
Sau96I GGNCC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 247
SetI ASST 4 cut(s) 56, 112, 146, 301
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 1 cut(s) 132
SphI GCATGC 1 cut(s) 30
Sse9I AATT 5 cut(s) 254, 339, 353, 421, 493
SsiI CCGC 1 cut(s) 218
SspMI CTAG 4 cut(s) 23, 111, 291, 485
TaiI ACGT 2 cut(s) 146, 301
TasI AATT 5 cut(s) 254, 339, 353, 421, 493
Tru1I TTAA 2 cut(s) 356, 381
Tru9I TTAA 2 cut(s) 356, 381
TscAI CASTG 3 cut(s) 19, 63, 75
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 2 cut(s) 234, 328
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 3 cut(s) 19, 63, 75
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 3 cut(s) 254, 339, 421
XceI RCATGY 1 cut(s) 30
XspI CTAG 4 cut(s) 23, 111, 291, 485
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.