Rorug02G0326400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007601
Physical Location & Seq
Reverse (-)
40043233 .. 40047597
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0326400.1

Sequence Viewer

Length: 1266 bp
ATGGAGAATGGGAATGGTTATTCGCATCAGAAATGGAATTTCCGAGGGAATGAAGAACTGAACACTGCCTCAATCTCCGTCCGTGGTGTTCTCAACACCTTAGCAAAGAATCTCAACTCCGACGATCGACGGTCCACCATTATGCTCGGCCGCGGCGACCCGACTGAGTTTGCATCATTCTGGACGGCTCCTCCGGCCGCTGATGCCGTCTCAGATGCCCTCCTATCCTTCAAGTTCAACTCTTATTGTCCTACCGGCGGTGTTTTCGAAGCAAGAAGAGCTATTGCAGAGTTTCTCTCCCGTGACCTCTCAGGCCAGTTATTGCCTGAAGATGTATATCTCACTGTTGGTTGCACACAAGCAATCGAGATCATAGTGTCTGTTCTTGCACGTCCTGGTGCCAATATTCTGCTTCCCAAGCCTGGTTACCCACAGTATGAAGCTCGAGCAGCTTTTGACCATCTTGAAGTTCGCCATTTTGATCTTATTCCTGAAAAAGGTTGGGAGGTGGATCTTGATTCCGTTGAAGCTCTTGTGGATAACAACACTGCCGCCATTGTTGTCATTAACCCTAGCAATCCTTGTGGAAATGTCTTCACATACCAGCATTTGAAGAAGATTGCAGAAACAGCAAAGAAACTGGGGATCTTTGTGATTTCGGATGAAGTTTATGGCCGTTTGGCTTTTGGCAGTAACCCTTTTGTGCCTATGGGAAAGTTCAGTTCAATTGTACCAGTTCTTACACTTGGTTCTATATCAAAGACATGGATTGTTCCTGGCTGGAGACTTGGCTGGATTGTGAAAAATGATCCCGAGGGCATCCTTGAAAAAACTGGGATCGTGGACAGCATTAAGAACTATCTTGATATCACTTGTGACCCGGCAACCTTTGTTCAGGGAGCAATACCTCAAATCATTGAGCGCACAAAAGAGAGTTTTTTCTCCAATATAATTGGCATAATGAGAGAAGCTGTGGATATGTTATATGACATGATTAAGGAAATCCCATGCATTACTTGCCCACATAAACCTGAAGGTTCCATGGTTGTATTGGTTAAACTAAACCTATCGGCACTTGAAGGCATTGATGATGATATACAGTTTTGTCTTAAGCTGTCCAAAGAGGAGTCTGTGATTGTTCTGCCAGGGGTCACTGTTGGACTGAAAAATTGGCTCCGCATTACTTTTGCTGTTGAACCTCAAGTACTTAAAGAAGGCCTTGAAAGGATCAAAGCCTTCTCCCAAAGACATGCCAAGAAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

421

Amino Acids

46.54

Weight (kDa)

5.56

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 47 - 410 9.5e-56 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AccII CGCG 1 cut(s) 153
AciI CCGC 6 cut(s) 151, 153, 198, 258, 552, 1177
AclWI GGATC 5 cut(s) 519, 653, 803, 845, 1235
AcoI YGGCCR 3 cut(s) 148, 195, 673
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 2 cut(s) 348, 1053
AfaI GTAC 2 cut(s) 732, 1206
AfiI CCNNNNNNNGG 3 cut(s) 257, 422, 497
AflII CTTAAG 1 cut(s) 1109
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 4 cut(s) 394, 421, 775, 1144
AluBI AGCT 6 cut(s) 281, 443, 452, 530, 971, 1114
AluI AGCT 6 cut(s) 281, 443, 452, 530, 971, 1114
Alw26I GTCTC 2 cut(s) 214, 778
AlwI GGATC 5 cut(s) 519, 653, 803, 845, 1235
Ama87I CYCGRG 2 cut(s) 444, 812
AoxI GGCC 5 cut(s) 148, 195, 313, 673, 1216
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 881
AsuII TTCGAA 1 cut(s) 267
AvaI CYCGRG 2 cut(s) 444, 812
AvaII GGWCC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 586
BbvI GCAGC 1 cut(s) 461
BccI CCATC 1 cut(s) 468
BceAI ACGGC 3 cut(s) 191, 201, 660
BciT130I CCWGG 4 cut(s) 396, 423, 777, 1146
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 214, 778
BfaI CTAG 1 cut(s) 573
BfrI CTTAAG 1 cut(s) 1109
BisI GCNGC 5 cut(s) 151, 154, 198, 450, 552
BlsI GCNGC 5 cut(s) 152, 155, 199, 451, 553
BmcAI AGTACT 1 cut(s) 1206
Bme1390I CCNGG 5 cut(s) 396, 423, 777, 881, 1146
Bme18I GGWCC 1 cut(s) 132
BmeT110I CYCGRG 2 cut(s) 444, 812
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 4 cut(s) 189, 400, 1039, 1175
BmrFI CCNGG 5 cut(s) 396, 423, 777, 881, 1146
BmrI ACTGGG 2 cut(s) 650, 843
BmsI GCATC 5 cut(s) 34, 182, 193, 205, 828
BmuI ACTGGG 2 cut(s) 650, 843
BpiI GAAGAC 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 802
Bpu10I CCTNAGC 1 cut(s) 100
Bpu14I TTCGAA 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 1185
BpuMI CCSGG 1 cut(s) 881
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 6 cut(s) 43, 82, 151, 813, 1041, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 422, 497
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 4 cut(s) 316, 645, 734, 838
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 4 cut(s) 396, 423, 777, 1146
BseDI CCNNGG 6 cut(s) 43, 82, 151, 813, 1041, 1145
BseGI GGATG 2 cut(s) 667, 819
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 257, 422, 497
BseMII CTCAG 3 cut(s) 156, 225, 324
BseNI ACTGG 4 cut(s) 316, 645, 734, 838
BseRI GAGGAG 2 cut(s) 180, 1139
BseX3I CGGCCG 2 cut(s) 148, 195
BseXI GCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 3 cut(s) 127, 151, 198
BshFI GGCC 5 cut(s) 150, 197, 315, 675, 1218
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 3 cut(s) 127, 151, 198
BsiHKCI CYCGRG 2 cut(s) 444, 812
BsiSI CCGG 3 cut(s) 194, 255, 881
BslI CCNNNNNNNGG 3 cut(s) 257, 422, 497
BsmAI GTCTC 2 cut(s) 214, 778
BsmBI CGTCTC 1 cut(s) 214
BsnI GGCC 5 cut(s) 150, 197, 315, 675, 1218
BsoBI CYCGRG 2 cut(s) 444, 812
Bsp119I TTCGAA 1 cut(s) 267
Bsp143I GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
Bsp19I CCATGG 1 cut(s) 1041
BspACI CCGC 6 cut(s) 151, 153, 198, 258, 552, 1177
BspANI GGCC 5 cut(s) 150, 197, 315, 675, 1218
BspCNI CTCAG 3 cut(s) 157, 224, 323
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 189, 400, 1039, 1175
BspPI GGATC 5 cut(s) 519, 653, 803, 845, 1235
BspQI GCTCTTC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 398
BspTI CTTAAG 1 cut(s) 1109
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 4 cut(s) 316, 645, 734, 838
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 6 cut(s) 43, 82, 151, 813, 1041, 1145
BssMI GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
BssT1I CCWWGG 1 cut(s) 1041
Bst2UI CCWGG 4 cut(s) 396, 423, 777, 1146
Bst4CI ACNGT 5 cut(s) 132, 346, 435, 1101, 1156
Bst6I CTCTTC 1 cut(s) 271
BstAFI CTTAAG 1 cut(s) 1109
BstAPI GCANNNNNTGC 1 cut(s) 1017
BstBI TTCGAA 1 cut(s) 267
BstDEI CTNAG 4 cut(s) 100, 165, 211, 310
BstDSI CCRYGG 3 cut(s) 82, 151, 1041
BstEII GGTNACC 1 cut(s) 425
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 667, 819
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 8 cut(s) 127, 372, 484, 514, 648, 811, 840, 1230
BstMAI GTCTC 2 cut(s) 214, 778
BstMBI GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
BstMCI CGRYCG 3 cut(s) 127, 151, 198
BstMWI GCNNNNNNNGC 7 cut(s) 194, 203, 278, 418, 449, 629, 1017
BstNI CCWGG 4 cut(s) 396, 423, 777, 1146
BstNSI RCATGY 1 cut(s) 1253
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 5 cut(s) 394, 421, 775, 879, 1144
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 2 cut(s) 511, 645
BstYI RGATCY 2 cut(s) 511, 645
BstZI CGGCCG 2 cut(s) 148, 195
BsuRI GGCC 5 cut(s) 150, 197, 315, 675, 1218
BtgI CCRYGG 3 cut(s) 82, 151, 1041
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 2 cut(s) 667, 819
BtsI GCAGTG 2 cut(s) 63, 546
BtsIMutI CAGTG 4 cut(s) 63, 342, 546, 1152
CfoI GCGC 1 cut(s) 924
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 132
Cfr42I CCGCGG 1 cut(s) 154
Csp6I GTAC 2 cut(s) 731, 1205
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 5 cut(s) 765, 991, 1008, 1042, 1250
CviQI GTAC 2 cut(s) 731, 1205
DdeI CTNAG 4 cut(s) 100, 165, 211, 310
DpnI GATC 8 cut(s) 126, 371, 483, 513, 647, 810, 839, 1229
DpnII GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
EaeI YGGCCR 3 cut(s) 148, 195, 673
EagI CGGCCG 2 cut(s) 148, 195
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
EclXI CGGCCG 2 cut(s) 148, 195
Eco130I CCWWGG 1 cut(s) 1041
Eco147I AGGCCT 1 cut(s) 1218
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 132
Eco52I CGGCCG 2 cut(s) 148, 195
Eco57I CTGAAG 2 cut(s) 348, 1053
Eco88I CYCGRG 2 cut(s) 444, 812
Eco91I GGTNACC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 4 cut(s) 394, 421, 775, 1144
EcoRV GATATC 1 cut(s) 868
EcoT14I CCWWGG 1 cut(s) 1041
EcoT22I ATGCAT 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 5 cut(s) 768, 994, 1011, 1045, 1253
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FatI CATG 5 cut(s) 764, 990, 1007, 1041, 1249
Fnu4HI GCNGC 5 cut(s) 151, 154, 198, 450, 552
FokI GGATG 2 cut(s) 674, 806
Fsp4HI GCNGC 5 cut(s) 151, 154, 198, 450, 552
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 923
GluI GCNGC 5 cut(s) 151, 154, 198, 450, 552
GsuI CTGGAG 1 cut(s) 802
HaeIII GGCC 5 cut(s) 150, 197, 315, 675, 1218
HapII CCGG 3 cut(s) 194, 255, 881
HhaI GCGC 1 cut(s) 924
Hin1II CATG 5 cut(s) 768, 994, 1011, 1045, 1253
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HinfI GANTC 3 cut(s) 109, 518, 1127
HpaII CCGG 3 cut(s) 194, 255, 881
Hpy166II GTNNAC 2 cut(s) 135, 844
Hpy188I TCNGA 5 cut(s) 30, 44, 121, 214, 661
Hpy188III TCNNGA 7 cut(s) 181, 367, 464, 491, 515, 812, 863
Hpy8I GTNNAC 2 cut(s) 135, 844
Hpy99I CGWCG 2 cut(s) 125, 132
HpyAV CCTTC 5 cut(s) 238, 1028, 1073, 1208, 1246
HpyCH4III ACNGT 5 cut(s) 132, 346, 435, 1101, 1156
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 6 cut(s) 173, 287, 354, 389, 623, 1011
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 203, 278, 418, 449, 629, 1017
HpyF3I CTNAG 4 cut(s) 100, 165, 211, 310
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 5 cut(s) 768, 994, 1011, 1045, 1253
HspAI GCGC 1 cut(s) 922
KspI CCGCGG 1 cut(s) 154
Kzo9I GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 3 cut(s) 193, 899, 1179
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 5 cut(s) 34, 182, 193, 205, 828
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 5 cut(s) 302, 425, 692, 875, 1150
MalI GATC 8 cut(s) 126, 371, 483, 513, 647, 810, 839, 1229
MboI GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
MboII GAAGA 6 cut(s) 65, 288, 341, 586, 625, 628
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 2 cut(s) 511, 645
MluCI AATT 4 cut(s) 37, 726, 951, 1168
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 2 cut(s) 144, 1138
Mph1103I ATGCAT 1 cut(s) 1013
MseI TTAA 6 cut(s) 567, 852, 996, 1056, 1110, 1209
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 153, 200
MspCI CTTAAG 1 cut(s) 1109
MspI CCGG 3 cut(s) 194, 255, 881
MspR9I CCNGG 5 cut(s) 396, 423, 777, 881, 1146
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 4 cut(s) 396, 423, 777, 1146
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 7 cut(s) 194, 203, 278, 418, 449, 629, 1017
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 1 cut(s) 1041
NdeII GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
NlaIII CATG 5 cut(s) 768, 994, 1011, 1045, 1253
NlaIV GGNNCC 4 cut(s) 189, 400, 1039, 1175
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 3 cut(s) 302, 875, 1150
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 1 cut(s) 1253
NspV TTCGAA 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 444
PceI AGGCCT 1 cut(s) 1218
PciSI GCTCTTC 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 2 cut(s) 109, 518
PkrI GCNGC 5 cut(s) 152, 155, 199, 451, 553
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
Psp6I CCWGG 4 cut(s) 394, 421, 775, 1144
PspEI GGTNACC 1 cut(s) 425
PspGI CCWGG 4 cut(s) 394, 421, 775, 1144
PspN4I GGNNCC 4 cut(s) 189, 400, 1039, 1175
PspPI GGNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 444
PsrI GAACNNNNNNTAC 2 cut(s) 1188, 1220
PsuI RGATCY 2 cut(s) 511, 645
PvuI CGATCG 1 cut(s) 127
RsaI GTAC 2 cut(s) 732, 1206
RsaNI GTAC 2 cut(s) 731, 1205
RseI CAYNNNNRTG 1 cut(s) 140
SacII CCGCGG 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 6 cut(s) 567, 852, 996, 1056, 1110, 1209
SatI GCNGC 5 cut(s) 151, 154, 198, 450, 552
Sau3AI GATC 8 cut(s) 124, 369, 481, 511, 645, 808, 837, 1227
Sau96I GGNCC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 1206
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 5 cut(s) 396, 423, 777, 881, 1146
SfaNI GCATC 5 cut(s) 34, 182, 193, 205, 828
Sfr274I CTCGAG 1 cut(s) 444
Sfr303I CCGCGG 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 154
SinI GGWCC 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 3 cut(s) 444, 1109, 1200
SmoI CTYRAG 3 cut(s) 444, 1109, 1200
Sse9I AATT 4 cut(s) 37, 726, 951, 1168
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 6 cut(s) 151, 153, 198, 258, 552, 1177
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 573
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 5 cut(s) 394, 421, 775, 879, 1144
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 5 cut(s) 132, 346, 435, 1101, 1156
TaiI ACGT 1 cut(s) 394
TaqI TCGA 4 cut(s) 127, 267, 366, 445
TasI AATT 4 cut(s) 37, 726, 951, 1168
TatI WGTACW 1 cut(s) 1204
TauI GCSGC 4 cut(s) 153, 156, 200, 554
TfiI GAWTC 2 cut(s) 109, 518
Tru1I TTAA 6 cut(s) 567, 852, 996, 1056, 1110, 1209
Tru9I TTAA 6 cut(s) 567, 852, 996, 1056, 1110, 1209
TscAI CASTG 4 cut(s) 70, 349, 553, 1159
TseFI GTSAC 3 cut(s) 302, 875, 1150
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 3 cut(s) 302, 875, 1150
TspDTI ATGAA 3 cut(s) 66, 453, 678
TspGWI ACGGA 3 cut(s) 67, 71, 511
TspRI CASTG 4 cut(s) 70, 349, 553, 1159
Vha464I CTTAAG 1 cut(s) 1109
VpaK11BI GGWCC 1 cut(s) 132
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 1206
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.