Rh2BG384400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007601
Physical Location & Seq
Reverse (-)
54504062 .. 54512044
7983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG384400.1

Sequence Viewer

Length: 465 bp
ATGCATGGGAGCAGTGGTTGTCTAGCATGCCTAACTAAAACCAAACAGGAAACCTCAGTGAATGAGCCACTGAAAGAAAGATCAAATAAAAATCTGACAGAAAGGAAACCTAGTATATCAGAGGACTTCTGGACCACCAGCACGTGGGATATGGACAATAGTGCAGTTCTGTCACAAGGAAGCATATCGTCAATCAGCACAAACCAGACCCTTGATCCGCATGGTGGTTCTGGCAGCAGTAGTGCCCCTTCTGAATTTGTAAATCATGGTCTTCTTCTCTGGAACCAGACTAGGCAGCGTTGGGTAGGGAGTAAAAAGCCTGAGAAGCAGCCACAGCAAATTCGGGAACCCAAATTAAGGTTAGTTGCATCTAGGGTTTTTGATCTCCCGAAGTTCAGTGGAGCAGTTTGGTTTACATCTTCCAAAAAGAACCATTTAACTTGGAAGGTATATATGACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

154

Amino Acids

17.3

Weight (kDa)

9.65

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 48 - 117 3.6e-13 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 2 cut(s) 254, 339
AcvI CACGTG 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 144, 224, 357
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 234, 295, 328
ApoI RAATTY 2 cut(s) 254, 339
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 246, 307, 340
BfaI CTAG 4 cut(s) 23, 111, 291, 372
BisI GCNGC 3 cut(s) 235, 296, 329
BlsI GCNGC 3 cut(s) 236, 297, 330
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 284, 348
BmsI GCATC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 144
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 224, 357
BseLI CCNNNNNNNGG 3 cut(s) 144, 224, 357
BseMII CTCAG 2 cut(s) 69, 312
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 3 cut(s) 246, 307, 340
BsgI GTGCAG 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 144, 224, 357
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 80, 214, 382
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 68, 313
BspLI GGNNCC 2 cut(s) 284, 348
BspPI GGATC 1 cut(s) 209
BssMI GATC 3 cut(s) 80, 214, 382
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 55, 321
BstKTI GATC 3 cut(s) 83, 217, 385
BstMBI GATC 3 cut(s) 80, 214, 382
BstMWI GCNNNNNNNGC 2 cut(s) 325, 334
BstNSI RCATGY 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 246, 307, 340
BstV2I GAAGAC 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 4 cut(s) 19, 63, 68, 403
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 132
CviAII CATG 5 cut(s) 5, 27, 221, 266, 460
CviJI RGCY 3 cut(s) 67, 319, 331
CviKI_1 RGCY 3 cut(s) 67, 319, 331
DdeI CTNAG 2 cut(s) 55, 321
DpnI GATC 3 cut(s) 82, 216, 384
DpnII GATC 3 cut(s) 80, 214, 382
Eco47I GGWCC 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 5 cut(s) 8, 30, 224, 269, 463
FatI CATG 5 cut(s) 4, 26, 220, 265, 459
Fnu4HI GCNGC 3 cut(s) 235, 296, 329
Fsp4HI GCNGC 3 cut(s) 235, 296, 329
FspBI CTAG 4 cut(s) 23, 111, 291, 372
GluI GCNGC 3 cut(s) 235, 296, 329
Hin1II CATG 5 cut(s) 8, 30, 224, 269, 463
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 3 cut(s) 96, 121, 253
Hpy188III TCNNGA 4 cut(s) 130, 280, 344, 388
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 2 cut(s) 258, 439
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 4, 164, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 334
HpyF3I CTNAG 2 cut(s) 55, 321
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 5 cut(s) 8, 30, 224, 269, 463
Kzo9I GATC 3 cut(s) 80, 214, 382
LmnI GCTCC 2 cut(s) 9, 401
LpnPI CCDG 8 cut(s) 32, 115, 151, 216, 218, 265, 299, 333
Lsp1109I GCAGC 3 cut(s) 246, 307, 340
LweI GCATC 1 cut(s) 377
MaeI CTAG 4 cut(s) 23, 111, 291, 372
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 171
MalI GATC 3 cut(s) 82, 216, 384
MboI GATC 3 cut(s) 80, 214, 382
MboII GAAGA 3 cut(s) 263, 266, 411
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 3 cut(s) 254, 339, 353
MnlI CCTC 2 cut(s) 64, 115
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 356, 437
MwoI GCNNNNNNNGC 2 cut(s) 325, 334
NdeII GATC 3 cut(s) 80, 214, 382
NlaIII CATG 5 cut(s) 8, 30, 224, 269, 463
NlaIV GGNNCC 2 cut(s) 284, 348
NmuCI GTSAC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 30
PaeI GCATGC 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 3 cut(s) 236, 297, 330
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 144
PspCI CACGTG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 284, 348
PspPI GGNCC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 356, 437
SatI GCNGC 3 cut(s) 235, 296, 329
Sau3AI GATC 3 cut(s) 80, 214, 382
Sau96I GGNCC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 247
SetI ASST 5 cut(s) 56, 112, 146, 362, 450
SfaNI GCATC 1 cut(s) 377
SinI GGWCC 1 cut(s) 132
SphI GCATGC 1 cut(s) 30
Sse9I AATT 3 cut(s) 254, 339, 353
SsiI CCGC 1 cut(s) 218
SspMI CTAG 4 cut(s) 23, 111, 291, 372
TaiI ACGT 1 cut(s) 146
TasI AATT 3 cut(s) 254, 339, 353
Tru1I TTAA 2 cut(s) 356, 437
Tru9I TTAA 2 cut(s) 356, 437
TscAI CASTG 4 cut(s) 19, 63, 75, 403
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 3 cut(s) 234, 295, 328
Tsp45I GTSAC 1 cut(s) 171
TspRI CASTG 4 cut(s) 19, 63, 75, 403
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 2 cut(s) 254, 339
XceI RCATGY 1 cut(s) 30
XspI CTAG 4 cut(s) 23, 111, 291, 372
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.