FvH4_6g29900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007601
Physical Location & Seq
Reverse (-)
23113670 .. 23116721
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29900.t1

Sequence Viewer

Length: 1035 bp
ATGGTGGGAATCCAAACTCCACTCAACAATCCCACCATATATAAAATTCTACCATCAAAGTCAGACGCTTCTCCTCCAATTCCCAATTATTGTCAGAAGAAGAAGAAGCAGCAGACCCAACAAACAAAGAATCCAAAGGGCCATCCTTTTCTGGGCGGTTGCTTCAGAGAGCGGGTGGGTTGCCTTTGGAATCCGGTTTCAGGAAACAAGACTCATTTTCTCACGGAAGCGGCTCTTTGTTTCCTGGAATCGGATTACCGATTGGATATTCCGGGGCGTAATCCTCCCCAGTGGATCCAATTTGTTGCTTTCTGGGTCTACCTTGAATTGAATGCATGGGTAGAGGGGTTTGCTGACGATTACACATTAGTGGTGGAACTATGTGGCTCATCTGTAGTAGAGGGGCTCCTCTTTGGTTCATCTGTAGCAGAGGGGTTCGCTGACAATTACACATTAGCAGTGCAACTCTGTCAATGTGATCTCATTGTGTGGTCACATAGCAGTGCTTGTCTAGCGTGCCATACTAAAACCAAACTGGAAACTTCAGTGGATGAGAAACTGAAAGAAAGATCAAATAAAAAGCCAACAGAAAGGAAACCTAGTATATCAGAAGGCTTCTGGACCACCAGCACGTGGGATATGGACAACAGTGCAGTTCTGTCACAGGGAAGCATATCATCAATCAGCACAAACCAGACCCTTGATCCGCATGGTGGTTCTGCTGGCAGTAGTGCTCCTTCTGAATTTGAGTATGTTGTGTACATAGGAAAAGCATTTAGCGAGTCCCTTTCAGGTTGCTCCTATCGGAACACCCCATGGCCATCCAATGGACTGAGTTTCCTTGGAAGTCTTCTTCTATGGAACCAAACTAGGCAGCGTTGGGTAGGGAGCAAAAAGCCTGAGAAGCAGCCACAGCAAATTCGGGAACCCAAATTAAGTTGGAATGCGACGTACGAAAGTTTACTGGGGAGTAACAAGCCTTTCACTCAGCCTATCCCTCTCTCTGTGAGTCTCTGCCCCTGCAAGAAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

345

Amino Acids

38.31

Weight (kDa)

8.37

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 284 - 335 8.1e-08 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 633, 827
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 318
AciI CCGC 4 cut(s) 156, 172, 230, 707
AclWI GGATC 3 cut(s) 289, 302, 698
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 3 cut(s) 45, 743, 918
AcuI CTGAAG 2 cut(s) 148, 528
AcvI CACGTG 1 cut(s) 633
AfaI GTAC 2 cut(s) 761, 953
AfiI CCNNNNNNNGG 6 cut(s) 152, 200, 250, 633, 713, 827
AgsI TTSAA 2 cut(s) 326, 331
AjnI CCWGG 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 368
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 1 cut(s) 1016
AlwI GGATC 3 cut(s) 289, 302, 698
AoxI GGCC 2 cut(s) 139, 818
ApeKI GCWGC 3 cut(s) 109, 874, 907
ApoI RAATTY 3 cut(s) 45, 743, 918
AspS9I GGNCC 2 cut(s) 139, 621
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 621
BalI TGGCCA 1 cut(s) 820
BamHI GGATCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
BbrPI CACGTG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 1 cut(s) 736
BbvI GCAGC 3 cut(s) 121, 886, 919
BccI CCATC 3 cut(s) 61, 150, 829
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 1016
BfaI CTAG 3 cut(s) 512, 600, 870
BfmI CTRYAG 2 cut(s) 393, 423
BisI GCNGC 4 cut(s) 110, 231, 875, 908
BlsI GCNGC 4 cut(s) 111, 232, 876, 909
Bme1390I CCNGG 2 cut(s) 245, 273
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 2 cut(s) 139, 621
BmiI GGNNCC 4 cut(s) 296, 407, 863, 927
BmrFI CCNGG 2 cut(s) 245, 273
BmrI ACTGGG 2 cut(s) 283, 974
BmuI ACTGGG 2 cut(s) 283, 974
BpiI GAAGAC 1 cut(s) 842
BpuMI CCSGG 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 272, 815, 841
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 6 cut(s) 152, 200, 250, 633, 713, 827
Bse1I ACTGG 3 cut(s) 289, 540, 969
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 272, 815, 841
BseGI GGATG 3 cut(s) 142, 556, 821
BseLI CCNNNNNNNGG 6 cut(s) 152, 200, 250, 633, 713, 827
BseMII CTCAG 3 cut(s) 824, 891, 1001
BseNI ACTGG 3 cut(s) 289, 540, 969
BseRI GAGGAG 2 cut(s) 63, 398
BseXI GCAGC 3 cut(s) 121, 886, 919
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 2 cut(s) 141, 820
BsiHKAI GWGCWC 1 cut(s) 736
BsiSI CCGG 2 cut(s) 194, 272
BsiWI CGTACG 1 cut(s) 951
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 6 cut(s) 152, 200, 250, 633, 713, 827
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 1 cut(s) 769
BsmI GAATGC 2 cut(s) 337, 949
BsnI GGCC 2 cut(s) 141, 820
Bsp1286I GDGCHC 2 cut(s) 408, 736
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 4 cut(s) 294, 478, 569, 703
Bsp19I CCATGG 1 cut(s) 815
BspACI CCGC 4 cut(s) 156, 172, 230, 707
BspANI GGCC 2 cut(s) 141, 820
BspCNI CTCAG 3 cut(s) 825, 892, 1000
BspLI GGNNCC 4 cut(s) 296, 407, 863, 927
BspPI GGATC 3 cut(s) 289, 302, 698
BsrBI CCGCTC 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 3 cut(s) 289, 540, 969
BssECI CCNNGG 3 cut(s) 272, 815, 841
BssMI GATC 4 cut(s) 294, 478, 569, 703
BssT1I CCWWGG 2 cut(s) 815, 841
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 650
BstAUI TGTACA 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 517, 724
BstDEI CTNAG 3 cut(s) 833, 900, 987
BstDSI CCRYGG 1 cut(s) 815
BstF5I GGATG 3 cut(s) 142, 556, 821
BstKTI GATC 4 cut(s) 297, 481, 572, 706
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 4 cut(s) 294, 478, 569, 703
BstMWI GCNNNNNNNGC 3 cut(s) 512, 904, 913
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 243, 271
BstSFI CTRYAG 2 cut(s) 393, 423
BstV1I GCAGC 3 cut(s) 121, 886, 919
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 2 cut(s) 141, 820
BtgI CCRYGG 1 cut(s) 815
BtsCI GGATG 3 cut(s) 142, 556, 821
BtsI GCAGTG 2 cut(s) 465, 508
BtsIMutI CAGTG 5 cut(s) 296, 465, 508, 552, 655
Cac8I GCNNGC 2 cut(s) 517, 724
Cfr13I GGNCC 2 cut(s) 139, 621
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 760, 952
CviAII CATG 3 cut(s) 336, 710, 816
CviQI GTAC 2 cut(s) 760, 952
DdeI CTNAG 3 cut(s) 833, 900, 987
DpnI GATC 4 cut(s) 296, 480, 571, 705
DpnII GATC 4 cut(s) 294, 478, 569, 703
EaeI YGGCCR 1 cut(s) 818
Eco130I CCWWGG 2 cut(s) 815, 841
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 621
Eco57I CTGAAG 2 cut(s) 148, 528
Eco72I CACGTG 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 815, 841
EcoT22I ATGCAT 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 815, 841
FaeI CATG 3 cut(s) 339, 713, 819
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 1 cut(s) 769
FatI CATG 3 cut(s) 335, 709, 815
FauI CCCGC 1 cut(s) 165
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 110, 231, 875, 908
FokI GGATG 3 cut(s) 129, 563, 808
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 4 cut(s) 110, 231, 875, 908
FspBI CTAG 3 cut(s) 512, 600, 870
GluI GCNGC 4 cut(s) 110, 231, 875, 908
HaeIII GGCC 2 cut(s) 141, 820
HapII CCGG 2 cut(s) 194, 272
HgaI GACGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 339, 713, 819
HinfI GANTC 7 cut(s) 9, 130, 190, 211, 248, 782, 1009
HpaII CCGG 2 cut(s) 194, 272
Hpy166II GTNNAC 3 cut(s) 319, 760, 962
Hpy188I TCNGA 7 cut(s) 64, 96, 167, 253, 610, 742, 807
Hpy188III TCNNGA 3 cut(s) 201, 619, 923
Hpy8I GTNNAC 3 cut(s) 319, 760, 962
Hpy99I CGWCG 1 cut(s) 952
HpyAV CCTTC 2 cut(s) 605, 747
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 2 cut(s) 632, 950
HpyCH4V TGCA 4 cut(s) 335, 463, 653, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 904, 913
HpyF3I CTNAG 3 cut(s) 833, 900, 987
HpySE526I ACGT 2 cut(s) 632, 950
Hsp92II CATG 3 cut(s) 339, 713, 819
Kzo9I GATC 4 cut(s) 294, 478, 569, 703
LmnI GCTCC 4 cut(s) 411, 739, 803, 888
Lsp1109I GCAGC 3 cut(s) 121, 886, 919
MaeI CTAG 3 cut(s) 512, 600, 870
MaeII ACGT 2 cut(s) 632, 950
MaeIII GTNAC 3 cut(s) 492, 660, 971
MalI GATC 4 cut(s) 296, 480, 571, 705
MbiI CCGCTC 1 cut(s) 172
MboI GATC 4 cut(s) 294, 478, 569, 703
MboII GAAGA 5 cut(s) 109, 112, 115, 842, 845
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 2 cut(s) 408, 736
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 9 cut(s) 45, 78, 85, 299, 326, 445, 743, 918, 932
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 3 cut(s) 205, 791, 1018
MmeI TCCRAC 1 cut(s) 920
MnlI CCTC 7 cut(s) 84, 294, 337, 394, 419, 424, 1008
Mox20I TGGCCA 1 cut(s) 820
Mph1103I ATGCAT 1 cut(s) 337
MscI TGGCCA 1 cut(s) 820
MseI TTAA 1 cut(s) 935
MslI CAYNNNNRTG 2 cut(s) 368, 501
Msp20I TGGCCA 1 cut(s) 820
MspI CCGG 2 cut(s) 194, 272
MspR9I CCNGG 2 cut(s) 245, 273
Mva1269I GAATGC 2 cut(s) 337, 949
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 512, 904, 913
NciI CCSGG 1 cut(s) 273
NcoI CCATGG 1 cut(s) 815
NdeII GATC 4 cut(s) 294, 478, 569, 703
NlaIII CATG 3 cut(s) 339, 713, 819
NlaIV GGNNCC 4 cut(s) 296, 407, 863, 927
NmuCI GTSAC 2 cut(s) 492, 660
NsiI ATGCAT 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 368
PctI GAATGC 2 cut(s) 337, 949
PfeI GAWTC 4 cut(s) 9, 130, 190, 248
Pfl23II CGTACG 1 cut(s) 951
PflMI CCANNNNNTGG 2 cut(s) 633, 827
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 4 cut(s) 111, 232, 876, 909
PleI GAGTC 3 cut(s) 205, 790, 1017
PmaCI CACGTG 1 cut(s) 633
PmlI CACGTG 1 cut(s) 633
PpsI GAGTC 3 cut(s) 205, 790, 1017
Ppu21I YACGTR 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 243
PspCI CACGTG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 243
PspLI CGTACG 1 cut(s) 951
PspN4I GGNNCC 4 cut(s) 296, 407, 863, 927
PspPI GGNCC 2 cut(s) 139, 621
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 2 cut(s) 761, 953
RsaNI GTAC 2 cut(s) 760, 952
RseI CAYNNNNRTG 2 cut(s) 368, 501
SaqAI TTAA 1 cut(s) 935
SatI GCNGC 4 cut(s) 110, 231, 875, 908
Sau3AI GATC 4 cut(s) 294, 478, 569, 703
Sau96I GGNCC 2 cut(s) 139, 621
SchI GAGTC 3 cut(s) 205, 791, 1018
ScrFI CCNGG 2 cut(s) 245, 273
SduI GDGCHC 2 cut(s) 408, 736
SetI ASST 5 cut(s) 324, 601, 635, 796, 953
SfcI CTRYAG 2 cut(s) 393, 423
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 368, 501
Sse9I AATT 9 cut(s) 45, 78, 85, 299, 326, 445, 743, 918, 932
SsiI CCGC 4 cut(s) 156, 172, 230, 707
SspMI CTAG 3 cut(s) 512, 600, 870
StyD4I CCNGG 2 cut(s) 243, 271
StyI CCWWGG 2 cut(s) 815, 841
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 2 cut(s) 635, 953
TasI AATT 9 cut(s) 45, 78, 85, 299, 326, 445, 743, 918, 932
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 9, 130, 190, 248
Tru1I TTAA 1 cut(s) 935
Tru9I TTAA 1 cut(s) 935
TscAI CASTG 5 cut(s) 296, 465, 508, 552, 655
TseFI GTSAC 2 cut(s) 492, 660
TseI GCWGC 3 cut(s) 109, 874, 907
Tsp45I GTSAC 2 cut(s) 492, 660
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 5 cut(s) 296, 465, 508, 552, 655
Van91I CCANNNNNTGG 2 cut(s) 633, 827
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 3 cut(s) 45, 743, 918
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 3 cut(s) 512, 600, 870
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.