Rorug02G0326600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007601
Physical Location & Seq
Reverse (-)
40065500 .. 40070580
5081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0326600.1

Sequence Viewer

Length: 765 bp
ATGGCTTCCTTATTCAAGGATCAAGCCAAGCTTTCACAATATCGGGATAGAAGATTTCCTGGATCGCAAGAGGAATTTGAACAAGCACTTCTGGCATCAACGACTGTTTATATTGGGAATATGTCTTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTCTCTCGTGCTGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAAACGCCTTGTGGCTTTTGTTTTGTCCTATTCTATTCTCGAGAAGATACTGAGGATGCTGTAAAATATATAAGCGGGACTATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGGCAATGGGGCCGAGGGCGAAGTGGTGGGCAGGTTCGCGATGAATATCGTACTGATTATGATCCAGGTAGGGGTGGATATGGTAAATTAGTTCAACGGGAGTTGGAAGCTCAGAGAACACTTGTAGATTATGGTACTGGATCATTGGGTTCTTTCCCTCCAGTCATGCCACCTCCTCACTATGGTAGACAAGGGGGAGGCAATAATCATGGCGGTTCTCATCGGCATGGTAGAGATTTTCAACGGAAACGACACCGTGATGATGATCGCCAGTCATATGAGACCTCAAAGAGAAACTCAAATTATGAACCGCGGAAGAACTCTGATCTTGACTCCAGACCGGAGAAAAATCCACGGTTTCGTGAGAGTGGTGACTCTGATGATGAGGAAGAAGATGGCAAAAAGCGGCGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

254

Amino Acids

29.35

Weight (kDa)

6.98

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 106 1.2e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 535
AccII CGCG 2 cut(s) 387, 661
AciI CCGC 5 cut(s) 288, 561, 659, 661, 754
AclWI GGATC 4 cut(s) 27, 70, 404, 496
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 2 cut(s) 400, 484
AfiI CCNNNNNNNGG 2 cut(s) 419, 530
AgsI TTSAA 4 cut(s) 16, 80, 443, 590
AjnI CCWGG 2 cut(s) 58, 412
AluBI AGCT 3 cut(s) 31, 157, 458
AluI AGCT 3 cut(s) 31, 157, 458
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 4 cut(s) 27, 70, 404, 496
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 252
BauI CACGAG 1 cut(s) 165
BccI CCATC 1 cut(s) 737
BciT130I CCWGG 2 cut(s) 60, 414
BcoDI GTCTC 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 2 cut(s) 60, 414
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 60, 414
BmsI GCATC 2 cut(s) 104, 259
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 3 cut(s) 192, 492, 667
BsaBI GATNNNNATC 3 cut(s) 393, 408, 612
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 3 cut(s) 361, 659, 701
BsaWI WCCGGW 1 cut(s) 688
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 530
Bse1I ACTGG 3 cut(s) 490, 509, 619
Bse3DI GCAATG 1 cut(s) 359
Bse8I GATNNNNATC 3 cut(s) 393, 408, 612
BseBI CCWGG 2 cut(s) 60, 414
BseDI CCNNGG 3 cut(s) 361, 659, 701
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 3 cut(s) 393, 408, 612
BseLI CCNNNNNNNGG 2 cut(s) 419, 530
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 2 cut(s) 255, 473
BseNI ACTGG 3 cut(s) 490, 509, 619
BseRI GAGGAG 1 cut(s) 513
Bsh1236I CGCG 2 cut(s) 387, 661
BshFI GGCC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 419, 530
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 252
Bsp143I GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 5 cut(s) 288, 561, 659, 661, 754
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 256, 472
BspFNI CGCG 2 cut(s) 387, 661
BspLI GGNNCC 1 cut(s) 359
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 4 cut(s) 27, 70, 404, 496
BspQI GCTCTTC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 3 cut(s) 490, 509, 619
BssECI CCNNGG 3 cut(s) 361, 659, 701
BssMI GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 60, 414
Bst4CI ACNGT 3 cut(s) 106, 605, 705
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 264, 459
BstDSI CCRYGG 2 cut(s) 659, 701
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 387, 661
BstKTI GATC 7 cut(s) 22, 65, 307, 412, 491, 616, 676
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 60, 414
BstSCI CCNGG 2 cut(s) 58, 412
BstUI CGCG 2 cut(s) 387, 661
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 2 cut(s) 659, 701
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 274
BtuMI TCGCGA 1 cut(s) 387
BveI ACCTGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 358
Cfr42I CCGCGG 1 cut(s) 662
Csp6I GTAC 2 cut(s) 399, 483
CviAII CATG 3 cut(s) 514, 557, 575
CviJI RGCY 8 cut(s) 5, 26, 31, 157, 198, 228, 360, 458
CviKI_1 RGCY 8 cut(s) 5, 26, 31, 157, 198, 228, 360, 458
CviQI GTAC 2 cut(s) 399, 483
DdeI CTNAG 2 cut(s) 264, 459
DpnI GATC 7 cut(s) 21, 64, 306, 411, 490, 615, 675
DpnII GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 58, 412
FaeI CATG 3 cut(s) 517, 560, 578
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 304
FatI CATG 3 cut(s) 513, 556, 574
FauI CCCGC 1 cut(s) 281
FauNDI CATATG 1 cut(s) 625
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 755
GluI GCNGC 1 cut(s) 755
GsuI CTGGAG 3 cut(s) 192, 492, 667
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 689
Hin1II CATG 3 cut(s) 517, 560, 578
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 336, 680, 722
HpaII CCGG 1 cut(s) 689
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 3 cut(s) 462, 673, 727
Hpy188III TCNNGA 8 cut(s) 44, 252, 254, 299, 386, 677, 684, 710
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 338, 342
HpyCH4III ACNGT 3 cut(s) 106, 605, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 264, 459
Hsp92II CATG 3 cut(s) 517, 560, 578
KspI CCGCGG 1 cut(s) 662
Kzo9I GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
LguI GCTCTTC 1 cut(s) 135
LweI GCATC 2 cut(s) 104, 259
MaeIII GTNAC 1 cut(s) 719
MalI GATC 7 cut(s) 21, 64, 306, 411, 490, 615, 675
MboI GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
MboII GAAGA 7 cut(s) 63, 152, 196, 269, 676, 749, 752
MluCI AATT 5 cut(s) 74, 177, 189, 434, 649
MlyI GAGTC 2 cut(s) 674, 716
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 9 cut(s) 64, 259, 356, 516, 531, 534, 539, 643, 727
MseI TTAA 2 cut(s) 180, 763
MslI CAYNNNNRTG 2 cut(s) 573, 606
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 2 cut(s) 60, 414
MvaI CCWGG 2 cut(s) 60, 414
MvnI CGCG 2 cut(s) 387, 661
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeI CATATG 1 cut(s) 625
NdeII GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
NlaIII CATG 3 cut(s) 517, 560, 578
NlaIV GGNNCC 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 719
NruI TCGCGA 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PfeI GAWTC 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 2 cut(s) 674, 716
PpsI GAGTC 2 cut(s) 674, 716
Psp6I CCWGG 2 cut(s) 58, 412
PspGI CCWGG 2 cut(s) 58, 412
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 358
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 2 cut(s) 400, 484
RsaNI GTAC 2 cut(s) 399, 483
RseI CAYNNNNRTG 2 cut(s) 573, 606
SacII CCGCGG 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 180, 763
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 7 cut(s) 19, 62, 304, 409, 488, 613, 673
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 674, 716
ScrFI CCNGG 2 cut(s) 60, 414
SetI ASST 8 cut(s) 33, 159, 384, 418, 460, 523, 635, 763
SfaNI GCATC 2 cut(s) 104, 259
Sfr274I CTCGAG 1 cut(s) 252
Sfr303I CCGCGG 1 cut(s) 662
SgrBI CCGCGG 1 cut(s) 662
SlaI CTCGAG 1 cut(s) 252
SmiMI CAYNNNNRTG 2 cut(s) 573, 606
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 5 cut(s) 74, 177, 189, 434, 649
SsiI CCGC 5 cut(s) 288, 561, 659, 661, 754
StyD4I CCNGG 2 cut(s) 58, 412
TaaI ACNGT 3 cut(s) 106, 605, 705
TaqI TCGA 1 cut(s) 253
TasI AATT 5 cut(s) 74, 177, 189, 434, 649
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 2 cut(s) 180, 763
Tru9I TTAA 2 cut(s) 180, 763
TseFI GTSAC 1 cut(s) 719
Tsp45I GTSAC 1 cut(s) 719
TspDTI ATGAA 2 cut(s) 405, 669
TspGWI ACGGA 1 cut(s) 607
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.