RLG00000019486

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007601
Physical Location & Seq
Reverse (-)
52612778 .. 52614928
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019486

Sequence Viewer

Length: 480 bp
ATGCATGGGAGCAGTGGTTGTCTAGCATGCCTAACTAAAACCAAACAGGAAACCTCAGTGAATGAGCCACTGAAAGAAAGATCAAATAAAAATCTGACAGAAAGGAAACCTAGTATATCAGAGGACTTCTGGACCACCAGCACGTGGGATATGGACAATAGTGCAGTTCTGTCACAAGGAAGCATATCGTCAATCAGCACAAACCAGACCCTTGATCCGCATGGCGGTTCTGGCAGCAGTAGTGCCCCTTCTGAATTTGTAAATCATGGTCTTCTTCTCTGGAACCAGACTAGGCAGCGTTGGGTAGGGAGTAAAAAGCCTGAGAAGCAGCCACAGCAAATTCGGGAACCCAAATTAAGTTGGAATGCGACATATGAAAATTTACTGGGGAGTAACAAGCCTTTCACTCAGCCTATCCCACTCTCTGAAATGGTAGATTTTCTAGTGGACAATTGGGAGCAAGAAGGGTTGTACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

160

Amino Acids

17.83

Weight (kDa)

5.4

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 48 - 159 7.6e-28 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 2 cut(s) 218, 225
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 3 cut(s) 254, 339, 379
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 144, 224
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 3 cut(s) 234, 295, 328
ApoI RAATTY 3 cut(s) 254, 339, 379
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 246, 307, 340
BfaI CTAG 4 cut(s) 23, 111, 291, 443
BisI GCNGC 3 cut(s) 235, 296, 329
BlsI GCNGC 3 cut(s) 236, 297, 330
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 284, 348
BmrI ACTGGG 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 144
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 224
Bse1I ACTGG 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 144, 224
BseMII CTCAG 3 cut(s) 69, 312, 422
BseNI ACTGG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 3 cut(s) 246, 307, 340
BsgI GTGCAG 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 144, 224
BsmI GAATGC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 80, 214
BspACI CCGC 2 cut(s) 218, 225
BspCNI CTCAG 3 cut(s) 68, 313, 421
BspLI GGNNCC 2 cut(s) 284, 348
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 390
BssMI GATC 2 cut(s) 80, 214
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 55, 321, 408
BstKTI GATC 2 cut(s) 83, 217
BstMBI GATC 2 cut(s) 80, 214
BstMWI GCNNNNNNNGC 3 cut(s) 231, 325, 334
BstNSI RCATGY 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 246, 307, 340
BstV2I GAAGAC 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 63, 68
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 472
CviAII CATG 4 cut(s) 5, 27, 221, 266
CviJI RGCY 5 cut(s) 67, 319, 331, 400, 412
CviKI_1 RGCY 5 cut(s) 67, 319, 331, 400, 412
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 3 cut(s) 55, 321, 408
DpnI GATC 2 cut(s) 82, 216
DpnII GATC 2 cut(s) 80, 214
Eco47I GGWCC 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 30, 224, 269
FaiI YATR 9 cut(s) 6, 28, 116, 152, 185, 222, 267, 373, 375
FatI CATG 4 cut(s) 4, 26, 220, 265
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 235, 296, 329
Fsp4HI GCNGC 3 cut(s) 235, 296, 329
FspBI CTAG 4 cut(s) 23, 111, 291, 443
GluI GCNGC 3 cut(s) 235, 296, 329
Hin1II CATG 4 cut(s) 8, 30, 224, 269
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 4 cut(s) 96, 121, 253, 427
Hpy188III TCNNGA 3 cut(s) 130, 280, 344
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 258, 458
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 4, 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 325, 334
HpyF3I CTNAG 3 cut(s) 55, 321, 408
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 4 cut(s) 8, 30, 224, 269
Kzo9I GATC 2 cut(s) 80, 214
LmnI GCTCC 2 cut(s) 9, 457
LpnPI CCDG 9 cut(s) 32, 115, 151, 216, 218, 265, 299, 333, 371
Lsp1109I GCAGC 3 cut(s) 246, 307, 340
MaeI CTAG 4 cut(s) 23, 111, 291, 443
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 171, 392
MalI GATC 2 cut(s) 82, 216
MboI GATC 2 cut(s) 80, 214
MboII GAAGA 2 cut(s) 263, 266
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 5 cut(s) 254, 339, 353, 379, 451
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 2 cut(s) 64, 115
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 356
MunI CAATTG 1 cut(s) 451
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 3 cut(s) 231, 325, 334
NdeI CATATG 1 cut(s) 373
NdeII GATC 2 cut(s) 80, 214
NlaIII CATG 4 cut(s) 8, 30, 224, 269
NlaIV GGNNCC 2 cut(s) 284, 348
NmuCI GTSAC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 30
PaeI GCATGC 1 cut(s) 30
PctI GAATGC 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 3 cut(s) 236, 297, 330
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 144
PspCI CACGTG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 284, 348
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 3 cut(s) 235, 296, 329
Sau3AI GATC 2 cut(s) 80, 214
Sau96I GGNCC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 247
SetI ASST 3 cut(s) 56, 112, 146
SinI GGWCC 1 cut(s) 132
SphI GCATGC 1 cut(s) 30
Sse9I AATT 5 cut(s) 254, 339, 353, 379, 451
SsiI CCGC 2 cut(s) 218, 225
SspMI CTAG 4 cut(s) 23, 111, 291, 443
TaiI ACGT 1 cut(s) 146
TasI AATT 5 cut(s) 254, 339, 353, 379, 451
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 3 cut(s) 19, 63, 75
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 3 cut(s) 234, 295, 328
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 3 cut(s) 19, 63, 75
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 3 cut(s) 254, 339, 379
XceI RCATGY 1 cut(s) 30
XspI CTAG 4 cut(s) 23, 111, 291, 443
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.