Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007848.1

Orthogroup ID

OG0007601

Physical Location & Seq

Genomic Coordinates Forward (+)

75985 .. 78200

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007848.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgcatgggagcagtggttgtctagcatgcctaactaaaaccaaacaggaaacctcagtgaatgagccactgaaagaaagatcaaataaaaatctgacagaaaggaaacctagtatatcagaggacttctggaccaccagcacgtgggatatggacaatagtgcagttctgtcacaaggaagcatatcgtcaatcagcacaaaccagacccttgatccgcatggtggttctggcagcagtagtgccccttctgaatttgtaaatcatggtcttcttctctggaaccagactaggcagcgttgggtagggagtaaaaagcctgagaagcagccacagcaaattcgggaacccaaattaagttggaatgcaacatatgaaaatttactggggagtaacaagcctttcacacagcctatccctctctctgaaatggtagattttctagtggacaattgggagcaagaaggattgtacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

159

Amino Acids

17.83

Weight (kDa)

5.4

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15770 AT3G15770
fragaria_vesca	FvH4_6g29900
malus_domestica	MD09G1232100.v1.1 MD17G1209500.v1.1
prunus_persica	Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1 Prupe.3G085100_v2.0.a1
pyrus_communis	pycom17g21510
rosa_chinensis	RchiOBHm_Chr2g0135801
rosa_laevigata	RLG00000019486
rosa_multiflora	Rmu_sc0007848.1_g000016
rosa_roxburghii	Rroxscaffold_2G00108820
rosa_rugosa	Rorug02G0326300 Rorug02G0326400 Rorug02G0326400 Rorug02G0326500 Rorug02G0326600
rosa_samantha	Rh2AG378100 Rh2BG384400 Rh2CG363900 Rh2DG400900
rosa_wichuraiana	Rw2G030800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	3 cut(s)	254, 339, 379
AcvI	CACGTG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	144, 224
AlwI	GGATC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	234, 295, 328
ApoI	RAATTY	3 cut(s)	254, 339, 379
AspS9I	GGNCC	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	232, 264
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	246, 307, 340
BfaI	CTAG	4 cut(s)	23, 111, 291, 443
BisI	GCNGC	3 cut(s)	235, 296, 329
BlsI	GCNGC	3 cut(s)	236, 297, 330
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	284, 348
BmrI	ACTGGG	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	144
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 224
Bse1I	ACTGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	144, 224
BseMII	CTCAG	2 cut(s)	69, 312
BseNI	ACTGG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	3 cut(s)	246, 307, 340
BsgI	GTGCAG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	144, 224
BsmI	GAATGC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	80, 214
BspACI	CCGC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	68, 313
BspLI	GGNNCC	2 cut(s)	284, 348
BspPI	GGATC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	80, 214
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	55, 321
BstKTI	GATC	2 cut(s)	83, 217
BstMBI	GATC	2 cut(s)	80, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 334
BstNSI	RCATGY	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	246, 307, 340
BstV2I	GAAGAC	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	19, 63, 68
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	5, 27, 221, 266
CviJI	RGCY	5 cut(s)	67, 319, 331, 400, 412
CviKI_1	RGCY	5 cut(s)	67, 319, 331, 400, 412
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	55, 321
DpnI	GATC	2 cut(s)	82, 216
DpnII	GATC	2 cut(s)	80, 214
Eco47I	GGWCC	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 30, 224, 269
FaiI	YATR	9 cut(s)	6, 28, 116, 152, 185, 222, 267, 373, 375
FatI	CATG	4 cut(s)	4, 26, 220, 265
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	235, 296, 329
Fsp4HI	GCNGC	3 cut(s)	235, 296, 329
FspBI	CTAG	4 cut(s)	23, 111, 291, 443
GluI	GCNGC	3 cut(s)	235, 296, 329
Hin1II	CATG	4 cut(s)	8, 30, 224, 269
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	4 cut(s)	96, 121, 253, 427
Hpy188III	TCNNGA	3 cut(s)	130, 280, 344
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	2 cut(s)	258, 458
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	4, 164, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 334
HpyF3I	CTNAG	2 cut(s)	55, 321
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	8, 30, 224, 269
Kzo9I	GATC	2 cut(s)	80, 214
LmnI	GCTCC	2 cut(s)	9, 457
LpnPI	CCDG	9 cut(s)	32, 115, 151, 216, 218, 265, 299, 333, 371
Lsp1109I	GCAGC	3 cut(s)	246, 307, 340
MaeI	CTAG	4 cut(s)	23, 111, 291, 443
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	171, 392
MalI	GATC	2 cut(s)	82, 216
MboI	GATC	2 cut(s)	80, 214
MboII	GAAGA	2 cut(s)	263, 266
MfeI	CAATTG	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	5 cut(s)	254, 339, 353, 379, 451
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	64, 115, 429
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	356
MunI	CAATTG	1 cut(s)	451
Mva1269I	GAATGC	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	325, 334
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	80, 214
NlaIII	CATG	4 cut(s)	8, 30, 224, 269
NlaIV	GGNNCC	2 cut(s)	284, 348
NmuCI	GTSAC	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	30
PaeI	GCATGC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	236, 297, 330
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	284, 348
PspPI	GGNCC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	3 cut(s)	235, 296, 329
Sau3AI	GATC	2 cut(s)	80, 214
Sau96I	GGNCC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	3 cut(s)	56, 112, 146
SinI	GGWCC	1 cut(s)	132
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	5 cut(s)	254, 339, 353, 379, 451
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	4 cut(s)	23, 111, 291, 443
TaiI	ACGT	1 cut(s)	146
TasI	AATT	5 cut(s)	254, 339, 353, 379, 451
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	3 cut(s)	19, 63, 75
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	3 cut(s)	234, 295, 328
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	3 cut(s)	19, 63, 75
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	3 cut(s)	254, 339, 379
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	4 cut(s)	23, 111, 291, 443
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.