Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013299

Physical Location & Seq

Genomic Coordinates Forward (+)

5820832 .. 5823353

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAACCAAAGAGCAAAGTTGCAGAATCTACAGCTGCATCATGTTTTCTCGTCATGAGCTTGTTATGCAGCTGCATTATTGGTGACCAAATGGAGACTAATAATGAAGGCTTGTCTTACAGTTACTACGAGAAAACTTGTCCCAAAGTCGAAGAGATAGTGAGATCTTCACTTTCATCAATGTTTATACTTGATCCTACTTCTCCTGCAGCCTTGCTAAGGCTTATGTTTCATGACTGCCAAGTTCAGGGATGTGACGCATCAATCCTACTCGAGCCAATTAGAGACCAACAGTTCACCGAGCTTGATTCAGCCAAGAACTTCGGAATCAGAAAGAGGGACCTGGTTGGCTCTATCAAAACCTCACTAGAGCTTGAGTGTCCCAAGCAAGTCTCATGCTCTGACGTCATCATCCTCGCCGCCAGAGACGCCGTGGCTCTCACGGGAGGCCCACTCATCTCCGTGCCATTAGGACGAAAAGACTCCCTCTCCACTCCAAGCAAACACGTGGCAGACTCTGAGCTTCCTCCCTCCACTGCTGACGTTGACACTACCTTAAGCCTATTCGCTAACAAAGGCATGACCATCGAAGAGTCCGTGGCCATCATGGGTGCACATACGATAGGAGTCACACATTGCAACAACGTATTATCGCGTTTCGATAACGCAAACGCGACAAGCGAGAACATGGATCCACGTTTTCAAACGTTCTTGCGTGTTGCTTGTCCAGAGTTTTCTCCAACTTCTCAAGCTGCGGAAGCCACATTTGTCCCCAACGATCAAACTTCGGTGATCTTCGATACAGCTTATTACGATGATGCCATCGCGGGACGTGGCAATCTTAGGATTGACTCGGAGATTGGAGCTGATCCACGTACACGTCCATTTGTGGAAGCGTTTGCAGCTGATCAAGACCGTTTCTTCAACGCCTTCTCTTCCGCGTTTGTAAAATTGTCGTCTTACAAAGTGTTAACCGGGAATGAAGGAGTAATTAGAAGCGTGTGTGACAAGGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

339

Amino Acids

36.81

Weight (kDa)

4.84

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	20 - 240	4e-58	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17070 AT3G17070 AT3G42570
fragaria_vesca	FvH4_4g19850
malus_domestica	MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica	Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis	pycom13g13040 pycom16g13010
rosa_chinensis	RchiOBHm_Chr4g0425421
rosa_laevigata	RLG00000007370
rosa_roxburghii	Rroxscaffold_5G00367380
rosa_rugosa	Rorug04G0202800
rosa_samantha	Rh4CG277200 Rh4DG261900
rosa_wichuraiana	Rw4G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
AccII	CGCG	4 cut(s)	655, 674, 827, 941
AciI	CCGC	4 cut(s)	420, 755, 827, 939
AclI	AACGTT	1 cut(s)	707
AclWI	GGATC	4 cut(s)	188, 686, 699, 863
AcoI	YGGCCR	1 cut(s)	600
AcvI	CACGTG	1 cut(s)	508
AcyI	GRCGYC	2 cut(s)	405, 429
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	2 cut(s)	219, 247
AflII	CTTAAG	1 cut(s)	556
AflIII	ACRYGT	2 cut(s)	505, 878
AgsI	TTSAA	2 cut(s)	704, 925
AjiI	CACGTC	2 cut(s)	833, 881
AjnI	CCWGG	1 cut(s)	342
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	4 cut(s)	89, 279, 397, 420
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	4 cut(s)	188, 686, 699, 863
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	448, 600
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	6 cut(s)	35, 69, 72, 209, 752, 902
AspS9I	GGNCC	2 cut(s)	340, 449
AsuC2I	CCSGG	1 cut(s)	976
AsuHPI	GGTGA	3 cut(s)	95, 289, 802
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	691
BbrPI	CACGTG	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	6 cut(s)	22, 59, 81, 221, 739, 914
BccI	CCATC	3 cut(s)	593, 611, 830
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	976
BcoDI	GTCTC	4 cut(s)	89, 279, 397, 420
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	2 cut(s)	30, 207
BfrI	CTTAAG	1 cut(s)	556
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	7 cut(s)	36, 70, 73, 210, 420, 753, 903
BlsI	GCNGC	7 cut(s)	37, 71, 74, 211, 421, 754, 904
Bme1390I	CCNGG	2 cut(s)	344, 976
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	2 cut(s)	833, 881
BmgT120I	GGNCC	2 cut(s)	340, 449
BmiI	GGNNCC	2 cut(s)	341, 693
BmrFI	CCNGG	2 cut(s)	344, 976
BmsI	GCATC	3 cut(s)	47, 269, 808
BplI	GAGNNNNNCTC	2 cut(s)	438, 470
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	2 cut(s)	395, 732
BpuMI	CCSGG	1 cut(s)	976
BsaAI	YACGTR	2 cut(s)	508, 875
BsaHI	GRCGYC	2 cut(s)	405, 429
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	432, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 247
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	432, 597
BseGI	GGATG	2 cut(s)	257, 411
BseLI	CCNNNNNNNGG	2 cut(s)	219, 247
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	6 cut(s)	22, 59, 81, 221, 739, 914
Bsh1236I	CGCG	4 cut(s)	655, 674, 827, 941
BshFI	GGCC	2 cut(s)	450, 602
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	975
BslFI	GGGAC	5 cut(s)	126, 353, 366, 755, 843
BslI	CCNNNNNNNGG	2 cut(s)	219, 247
BsmAI	GTCTC	4 cut(s)	89, 279, 397, 420
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	5 cut(s)	126, 353, 366, 755, 843
BsnI	GGCC	2 cut(s)	450, 602
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
BspACI	CCGC	4 cut(s)	420, 755, 827, 939
BspANI	GGCC	2 cut(s)	450, 602
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	4 cut(s)	655, 674, 827, 941
BspHI	TCATGA	2 cut(s)	54, 232
BspLI	GGNNCC	2 cut(s)	341, 693
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	4 cut(s)	188, 686, 699, 863
BspTI	CTTAAG	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	432, 597
BssMI	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
BssNI	GRCGYC	2 cut(s)	405, 429
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	3 cut(s)	122, 294, 917
Bst6I	CTCTTC	3 cut(s)	147, 585, 940
BstACI	GRCGYC	2 cut(s)	405, 429
BstAFI	CTTAAG	1 cut(s)	556
BstBAI	YACGTR	2 cut(s)	508, 875
BstDEI	CTNAG	3 cut(s)	218, 519, 842
BstDSI	CCRYGG	2 cut(s)	432, 597
BstEII	GGTNACC	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	257, 411
BstFNI	CGCG	4 cut(s)	655, 674, 827, 941
BstKTI	GATC	7 cut(s)	167, 196, 694, 781, 795, 871, 910
BstMAI	GTCTC	4 cut(s)	89, 279, 397, 420
BstMBI	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 428, 758, 902
BstNI	CCWGG	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	342, 974
BstSFI	CTRYAG	2 cut(s)	30, 207
BstSLI	GKGCMC	1 cut(s)	616
BstUI	CGCG	4 cut(s)	655, 674, 827, 941
BstV1I	GCAGC	6 cut(s)	22, 59, 81, 221, 739, 914
BstX2I	RGATCY	2 cut(s)	164, 691
BstYI	RGATCY	2 cut(s)	164, 691
BsuRI	GGCC	2 cut(s)	450, 602
BtgI	CCRYGG	2 cut(s)	432, 597
BtgZI	GCGATG	1 cut(s)	808
BtrI	CACGTC	2 cut(s)	833, 881
BtsCI	GGATG	2 cut(s)	257, 411
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	2 cut(s)	54, 232
Cfr13I	GGNCC	2 cut(s)	340, 449
CseI	GACGC	2 cut(s)	266, 437
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	7 cut(s)	42, 55, 233, 396, 580, 607, 688
CviQI	GTAC	1 cut(s)	876
DdeI	CTNAG	3 cut(s)	218, 519, 842
DpnI	GATC	7 cut(s)	166, 195, 693, 780, 794, 870, 909
DpnII	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	147, 585, 940
EarI	CTCTTC	3 cut(s)	147, 585, 940
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	340
Eco72I	CACGTG	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	83
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	7 cut(s)	45, 58, 236, 399, 583, 610, 691
FaqI	GGGAC	5 cut(s)	126, 353, 366, 755, 843
FatI	CATG	7 cut(s)	41, 54, 232, 395, 579, 606, 687
FauI	CCCGC	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	7 cut(s)	36, 70, 73, 210, 420, 753, 903
FokI	GGATG	2 cut(s)	264, 398
Fsp4HI	GCNGC	7 cut(s)	36, 70, 73, 210, 420, 753, 903
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	7 cut(s)	36, 70, 73, 210, 420, 753, 903
HaeIII	GGCC	2 cut(s)	450, 602
HapII	CCGG	1 cut(s)	975
HgaI	GACGC	2 cut(s)	266, 437
Hin1I	GRCGYC	2 cut(s)	405, 429
Hin1II	CATG	7 cut(s)	45, 58, 236, 399, 583, 610, 691
HincII	GTYRAC	2 cut(s)	547, 972
HindII	GTYRAC	2 cut(s)	547, 972
HinfI	GANTC	8 cut(s)	26, 308, 327, 482, 515, 593, 627, 851
HpaI	GTTAAC	1 cut(s)	972
HpaII	CCGG	1 cut(s)	975
HphI	GGTGA	3 cut(s)	95, 289, 802
Hpy166II	GTNNAC	5 cut(s)	297, 547, 614, 878, 972
Hpy188I	TCNGA	5 cut(s)	326, 332, 403, 520, 856
Hpy188III	TCNNGA	4 cut(s)	55, 233, 728, 911
Hpy8I	GTNNAC	5 cut(s)	297, 547, 614, 878, 972
HpyAV	CCTTC	3 cut(s)	101, 940, 977
HpyCH4III	ACNGT	3 cut(s)	122, 294, 917
HpyCH4IV	ACGT	9 cut(s)	405, 507, 543, 645, 697, 707, 832, 874, 880
HpyCH4V	TGCA	8 cut(s)	23, 38, 69, 75, 209, 614, 639, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 428, 758, 902
HpyF3I	CTNAG	3 cut(s)	218, 519, 842
HpySE526I	ACGT	9 cut(s)	405, 507, 543, 645, 697, 707, 832, 874, 880
Hsp92I	GRCGYC	2 cut(s)	405, 429
Hsp92II	CATG	7 cut(s)	45, 58, 236, 399, 583, 610, 691
Ksp22I	TGATCA	1 cut(s)	907
KspAI	GTTAAC	1 cut(s)	972
Kzo9I	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
LmnI	GCTCC	1 cut(s)	863
LpnPI	CCDG	7 cut(s)	219, 233, 329, 356, 436, 741, 988
Lsp1109I	GCAGC	6 cut(s)	22, 59, 81, 221, 739, 914
LweI	GCATC	3 cut(s)	47, 269, 808
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	9 cut(s)	405, 507, 543, 645, 697, 707, 832, 874, 880
MaeIII	GTNAC	5 cut(s)	83, 122, 254, 628, 1004
MalI	GATC	7 cut(s)	166, 195, 693, 780, 794, 870, 909
MboI	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
MboII	GAAGA	6 cut(s)	159, 164, 602, 787, 913, 927
MflI	RGATCY	2 cut(s)	164, 691
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	3 cut(s)	279, 950, 990
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	5 cut(s)	476, 509, 602, 636, 845
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	7 cut(s)	330, 373, 425, 440, 497, 537, 541
Mox20I	TGGCCA	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	2 cut(s)	557, 971
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	3 cut(s)	35, 72, 905
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	1 cut(s)	975
MspR9I	CCNGG	2 cut(s)	344, 976
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	4 cut(s)	655, 674, 827, 941
MwoI	GCNNNNNNNGC	4 cut(s)	66, 428, 758, 902
NciI	CCSGG	1 cut(s)	976
NdeII	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
NlaIII	CATG	7 cut(s)	45, 58, 236, 399, 583, 610, 691
NlaIV	GGNNCC	2 cut(s)	341, 693
NmuCI	GTSAC	4 cut(s)	83, 254, 628, 1004
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	2 cut(s)	54, 232
PcsI	WCGNNNNNNNCGW	2 cut(s)	594, 678
PfeI	GAWTC	3 cut(s)	26, 308, 327
PkrI	GCNGC	7 cut(s)	37, 71, 74, 211, 421, 754, 904
PleI	GAGTC	5 cut(s)	476, 509, 601, 635, 845
PmaCI	CACGTG	1 cut(s)	508
PmlI	CACGTG	1 cut(s)	508
PpsI	GAGTC	5 cut(s)	476, 509, 601, 635, 845
Ppu21I	YACGTR	2 cut(s)	508, 875
PpuMI	RGGWCCY	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	707
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	342
PspCI	CACGTG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	341, 693
PspPI	GGNCC	2 cut(s)	340, 449
PspPPI	RGGWCCY	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	164, 691
PvuII	CAGCTG	3 cut(s)	35, 72, 905
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	557, 971
SatI	GCNGC	7 cut(s)	36, 70, 73, 210, 420, 753, 903
Sau3AI	GATC	7 cut(s)	164, 193, 691, 778, 792, 868, 907
Sau96I	GGNCC	2 cut(s)	340, 449
SchI	GAGTC	5 cut(s)	476, 509, 602, 636, 845
ScrFI	CCNGG	2 cut(s)	344, 976
SduI	GDGCHC	1 cut(s)	616
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	3 cut(s)	47, 269, 808
SfcI	CTRYAG	2 cut(s)	30, 207
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	4 cut(s)	272, 374, 556, 747
SmoI	CTYRAG	4 cut(s)	272, 374, 556, 747
Sse9I	AATT	3 cut(s)	279, 950, 990
SsiI	CCGC	4 cut(s)	420, 755, 827, 939
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	342, 974
TaaI	ACNGT	3 cut(s)	122, 294, 917
TaiI	ACGT	9 cut(s)	408, 510, 546, 648, 700, 710, 835, 877, 883
TaqI	TCGA	5 cut(s)	150, 273, 588, 660, 798
TasI	AATT	3 cut(s)	279, 950, 990
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	3 cut(s)	26, 308, 327
Tru1I	TTAA	2 cut(s)	557, 971
Tru9I	TTAA	2 cut(s)	557, 971
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	4 cut(s)	83, 254, 628, 1004
TseI	GCWGC	6 cut(s)	35, 69, 72, 209, 752, 902
Tsp45I	GTSAC	4 cut(s)	83, 254, 628, 1004
TspDTI	ATGAA	5 cut(s)	17, 120, 165, 221, 996
TspGWI	ACGGA	2 cut(s)	451, 586
TspRI	CASTG	1 cut(s)	541
Vha464I	CTTAAG	1 cut(s)	556
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	1 cut(s)	368
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.