AT3G42570

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013299
Physical Location & Seq
Forward (+)
14689058 .. 14690388
1331 bp
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UTR
Exon/CDS
Intron
AT3G42570.1

Sequence Viewer

Length: 453 bp
ATGGAGACAAAGAAAGAAAAGAGCAAAGAAGGTTTAATCGCTGCCAAAGAGCTCAAGCGCCTCCAAACCAACTTAGTCCGACTTGATCGATTCATTGATTCTCATCCAAGTGGGGACCAACAGTTCACTGAGCTTGATTCAGTTGAGAACTTAGGAATCAAAAAGAGGGACCTGATTGGCTCTATCAAAACCTCACTGGAGCATGAGTGTCCCAAGCAAGTCTCATGCTCTGACGTCATCATCCTCTCCGCCAGAGACACCGTGGCTCTCACGGGAGGCCCACTCATTTCCGTGCTATTAGGACGAAAAGACTCCCTCTCCACTCCAAGCAAACACGTGGCAGACTCTGAGCCTCCTCCCTCCACTGCTGATGTTGACACCACCTTAAGCCTATTCGCTAGCAATGGCATGACCATTGAACAGTCTGTGGCCATTATGGGTATATATTTATAA

Protein Analysis

150

Amino Acids

16.26

Weight (kDa)

5.61

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 147 6.5e-26 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17070 AT3G17070 AT3G42570
fragaria_vesca FvH4_4g19850
malus_domestica MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis pycom13g13040 pycom16g13010
rosa_chinensis RchiOBHm_Chr4g0425421
rosa_laevigata RLG00000007370
rosa_roxburghii Rroxscaffold_5G00367380
rosa_rugosa Rorug04G0202800
rosa_samantha Rh4CG277200 Rh4DG261900
rosa_wichuraiana Rw4G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 451
AatII GACGTC 1 cut(s) 237
AciI CCGC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 429
AcvI CACGTG 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 234
AflII CTTAAG 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 1 cut(s) 419
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 52, 133
AluI AGCT 2 cut(s) 52, 133
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 226, 249
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 2 cut(s) 277, 429
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 115, 169, 278
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 2 cut(s) 115, 169
BalI TGGCCA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 226, 249
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 2 cut(s) 115, 169
BmgT120I GGNCC 3 cut(s) 115, 169, 278
BmiI GGNNCC 2 cut(s) 116, 170
BmtI GCTAGC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 302, 332
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 103, 240
BseJI GATNNNNATC 1 cut(s) 102
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 120, 339
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 279, 431
BshVI ATCGAT 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 3 cut(s) 128, 182, 195
BsmAI GTCTC 2 cut(s) 226, 249
BsmFI GGGAC 3 cut(s) 128, 182, 195
BsnI GGCC 2 cut(s) 279, 431
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 279, 431
BspCNI CTCAG 2 cut(s) 121, 340
BspDI ATCGAT 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 116, 170
BspOI GCTAGC 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 123, 262, 423
BstACI GRCGYC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 73, 129, 151, 348
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 103, 240
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 226, 249
BstMBI GATC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 2 cut(s) 279, 431
BsuTUI ATCGAT 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 103, 240
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 126, 194, 363
Cac8I GCNNGC 1 cut(s) 400
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 3 cut(s) 115, 169, 278
ClaI ATCGAT 1 cut(s) 88
CviAII CATG 3 cut(s) 203, 225, 409
CviJI RGCY 8 cut(s) 52, 133, 180, 266, 279, 352, 390, 431
CviKI_1 RGCY 8 cut(s) 52, 133, 180, 266, 279, 352, 390, 431
DdeI CTNAG 4 cut(s) 73, 129, 151, 348
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 429
EciI GGCGGA 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 115, 169
Eco53kI GAGCTC 1 cut(s) 52
Eco72I CACGTG 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 3 cut(s) 206, 228, 412
FaiI YATR 7 cut(s) 204, 226, 410, 437, 443, 445, 451
FaqI GGGAC 3 cut(s) 128, 182, 195
FatI CATG 3 cut(s) 202, 224, 408
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 90, 227
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 2 cut(s) 279, 431
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 3 cut(s) 206, 228, 412
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 6 cut(s) 90, 98, 137, 156, 311, 344
Hpy166II GTNNAC 2 cut(s) 126, 376
Hpy188I TCNGA 3 cut(s) 80, 232, 349
Hpy8I GTNNAC 2 cut(s) 126, 376
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 123, 262, 423
HpyCH4IV ACGT 2 cut(s) 234, 336
HpyF3I CTNAG 4 cut(s) 73, 129, 151, 348
HpySE526I ACGT 2 cut(s) 234, 336
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 3 cut(s) 206, 228, 412
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 3 cut(s) 182, 185, 265
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 234, 336
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 2 cut(s) 305, 338
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 9 cut(s) 71, 159, 202, 254, 269, 326, 363, 366, 370
Mox20I TGGCCA 1 cut(s) 431
MscI TGGCCA 1 cut(s) 431
MseI TTAA 2 cut(s) 35, 386
MslI CAYNNNNRTG 2 cut(s) 108, 290
Msp20I TGGCCA 1 cut(s) 431
MspCI CTTAAG 1 cut(s) 385
NdeII GATC 1 cut(s) 85
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 3 cut(s) 206, 228, 412
NlaIV GGNNCC 2 cut(s) 116, 170
PfeI GAWTC 4 cut(s) 90, 98, 137, 156
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 2 cut(s) 305, 338
PmaCI CACGTG 1 cut(s) 337
PmlI CACGTG 1 cut(s) 337
PpsI GAGTC 2 cut(s) 305, 338
Ppu21I YACGTR 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 169
PsiI TTATAA 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 169
PspCI CACGTG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 116, 170
PspPI GGNCC 3 cut(s) 115, 169, 278
PspPPI RGGWCCY 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 108, 290
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 35, 386
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 3 cut(s) 115, 169, 278
SchI GAGTC 2 cut(s) 305, 338
SduI GDGCHC 1 cut(s) 54
SetI ASST 8 cut(s) 34, 54, 135, 174, 194, 237, 339, 386
SinI GGWCC 2 cut(s) 115, 169
SmiMI CAYNNNNRTG 2 cut(s) 108, 290
SmlI CTYRAG 2 cut(s) 53, 385
SmoI CTYRAG 2 cut(s) 53, 385
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 399
SstI GAGCTC 1 cut(s) 54
TaaI ACNGT 3 cut(s) 123, 262, 423
TaiI ACGT 2 cut(s) 237, 339
TaqI TCGA 1 cut(s) 88
TfiI GAWTC 4 cut(s) 90, 98, 137, 156
Tru1I TTAA 2 cut(s) 35, 386
Tru9I TTAA 2 cut(s) 35, 386
TscAI CASTG 3 cut(s) 133, 201, 370
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 3 cut(s) 133, 201, 370
Vha464I CTTAAG 1 cut(s) 385
VpaK11BI GGWCC 2 cut(s) 115, 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XspI CTAG 1 cut(s) 399
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.