Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013299

Physical Location & Seq

Genomic Coordinates Forward (+)

47945544 .. 47946560

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG261900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCATCGGGGAGAAACTTTGGTGTCAGAAAGAGGGAGATAATCGGCATTCTGAAAACAATGGTTGAAGCAGAATGTCCTAAGCAGGTTTCTTGTACTGACATTCTTGTATTGGCGGCACGGGAGGCGGTGGCTATGTCAGGAGGGCCAGAAATTAAGGTTCCTCTGGGAAGGAGAGACTCCATTGTTGCTCCAAGCTCTAAGCTTGCAGATTCTTTGCTTCCTGCAGTGAATATTGGTGTTGATGGAACGCTTCATGTCTTCTCAAAATTTGGGATGACAATCGAAGAATCTGTAGCCATTTTGGGTGCGCACACGCTGGGAGTAACACACGTACTGTTCGAATGTCCTGAACCGCCTAAACGAAGCAGAAGACGGGCATATAAAAGGCACGATCACACCTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

136

Amino Acids

14.8

Weight (kDa)

9.41

Isoelectric Point (pI)

78.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	3 - 112	2.7e-30	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17070 AT3G17070 AT3G42570
fragaria_vesca	FvH4_4g19850
malus_domestica	MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica	Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis	pycom13g13040 pycom16g13010
rosa_chinensis	RchiOBHm_Chr4g0425421
rosa_laevigata	RLG00000007370
rosa_roxburghii	Rroxscaffold_5G00367380
rosa_rugosa	Rorug04G0202800
rosa_samantha	Rh4CG277200 Rh4DG261900
rosa_wichuraiana	Rw4G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	3 cut(s)	116, 128, 356
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	2 cut(s)	97, 336
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	2 cut(s)	198, 205
AluI	AGCT	2 cut(s)	198, 205
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	253, 379
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	225, 294
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	253, 379
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	282
BseJI	GATNNNNATC	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	116, 128, 356
BspANI	GGCC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	81, 201
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	2 cut(s)	225, 294
BstV2I	GAAGAC	2 cut(s)	253, 379
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	96, 335
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	134, 148, 198, 205, 299
CviKI_1	RGCY	5 cut(s)	134, 148, 198, 205, 299
CviQI	GTAC	2 cut(s)	96, 335
DdeI	CTNAG	2 cut(s)	81, 201
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	401
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	137, 258, 382, 384
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	117
FspAI	RTGCGCAY	1 cut(s)	312
FspI	TGCGCA	1 cut(s)	312
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	179, 212, 290
Hpy188I	TCNGA	2 cut(s)	29, 54
Hpy188III	TCNNGA	2 cut(s)	141, 350
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	209, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	81, 201
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	71, 126, 152, 162, 237, 305, 363, 388
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	3 cut(s)	253, 299, 384
MluCI	AATT	2 cut(s)	153, 269
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	27, 118, 137, 174
MseI	TTAA	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	162
NsbI	TGCGCA	1 cut(s)	312
NspV	TTCGAA	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	212, 290
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	97, 336
RsaNI	GTAC	2 cut(s)	96, 335
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	6 cut(s)	90, 162, 200, 207, 336, 404
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	225, 294
SfuI	TTCGAA	1 cut(s)	342
Sse9I	AATT	2 cut(s)	153, 269
SsiI	CCGC	3 cut(s)	116, 128, 356
SspI	AATATT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	285, 342
TasI	AATT	2 cut(s)	153, 269
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	212, 290
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.