FvH4_4g19850

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013299
Physical Location & Seq
Forward (+)
23352201 .. 23353698
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19850.t1

Sequence Viewer

Length: 975 bp
ATGGATCCCAGAGCTATAGTGGCGGGTATATGTCTGCTGCTATTTAACAGCATTGGGGCTAGAGGAGAAGGGCTTTCCTATAATTTCTATGAGGCCTCATGCCCACAAGCTGAGGACATTGTCAGAGCTGCCCTCGGACCTATCTTTCTCTCTGACCCGACTACTCCGGCAGCTTTGTTGAGGCTCATGTTCCATGATTGCCAAGTTCAGGGATGCGACGCTTCAATTCTTGTGGATTCTAGTGAGGCATATGCGTCTTCGGAGATGGCTTCGGGGAGGAACTTTGGTGTCAGAAAGAGGGAGACAATCGACATTCTGAAAGCATTGGTTGAAGCAGAATGTCCTCAGCAGGTTTCTTGTGCTGACATTCTTGTAATGGCGGCACAGGAGGCGGTGCATTTGTCAGGAGGGCCAGAAATTAAGGTTCCTTTGGGAAGGAGAGACTCCATTGTTGCTCCAAGCTCGAAACTTGCCGATTCTTCGCTTCCTGCAGCGAATATTGGTGTTGATGGCGCGCTTCAAGTATTCTCGAAACATGGGATGACAGTCGAAGAATCAGTCGCTATTTTGGGTGCGCACACACTAGGAGTAACACACTGTTTGAATGTCCTGAACCGCTTAAACGAAGCAGGAGAGGGGCAAACAAAAGGCGCGATCACAGCTGGGTTTGAAGCATTCTTAAGGCTAAACTGTCCTCAAGGGTCTTCAGCATCAAACTTAACCTTTGTGCTAAATGATCCAACTGCAGCTGCATTCGACAACCATTACTACAAAAATGCATTTGGAGGCCACGGGGTGCTTCAAGTTGATGCTGAAATGGTGATGGACCCGCGCACAGCTCCAGTGGTCCAACTATTTGCTGATAATGAAGCTTATTTCTTTGAAGCATTTTCTTCTGCCTTCGTCAAGCTCTCTCGCTCTGGCGTTCTGACTGGGGATCAAGGCGTTGTTAGAAAGACTTGTAATGCAATATAG

Protein Analysis

325

Amino Acids

34.26

Weight (kDa)

5.0

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 289 2.3e-66 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17070 AT3G17070 AT3G42570
fragaria_vesca FvH4_4g19850
malus_domestica MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis pycom13g13040 pycom16g13010
rosa_chinensis RchiOBHm_Chr4g0425421
rosa_laevigata RLG00000007370
rosa_roxburghii Rroxscaffold_5G00367380
rosa_rugosa Rorug04G0202800
rosa_samantha Rh4CG277200 Rh4DG261900
rosa_wichuraiana Rw4G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 340
AccII CGCG 3 cut(s) 515, 653, 832
AciI CCGC 5 cut(s) 23, 380, 392, 616, 830
AclWI GGATC 3 cut(s) 12, 731, 945
AcuI CTGAAG 1 cut(s) 690
AdeI CACNNNGTG 1 cut(s) 796
AfiI CCNNNNNNNGG 1 cut(s) 208
AflII CTTAAG 1 cut(s) 679
AgsI TTSAA 7 cut(s) 225, 332, 521, 604, 671, 803, 884
Alw26I GTCTC 2 cut(s) 296, 435
AlwI GGATC 3 cut(s) 12, 731, 945
AoxI GGCC 3 cut(s) 93, 410, 787
ApeKI GCWGC 6 cut(s) 37, 128, 170, 491, 746, 749
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
AspLEI GCGC 5 cut(s) 515, 517, 577, 653, 834
AspS9I GGNCC 4 cut(s) 137, 410, 826, 847
AsuHPI GGTGA 1 cut(s) 832
AvaII GGWCC 3 cut(s) 137, 826, 847
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 249, 696
BbvCI CCTCAGC 2 cut(s) 111, 345
BbvI GCAGC 6 cut(s) 24, 115, 182, 503, 736, 758
BccI CCATC 3 cut(s) 259, 503, 817
BcoDI GTCTC 2 cut(s) 296, 435
BfaI CTAG 3 cut(s) 60, 240, 584
BfmI CTRYAG 3 cut(s) 15, 489, 744
BfrI CTTAAG 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 7 cut(s) 38, 129, 171, 381, 492, 747, 750
BlsI GCNGC 7 cut(s) 39, 130, 172, 382, 493, 748, 751
Bme18I GGWCC 3 cut(s) 137, 826, 847
BmgT120I GGNCC 4 cut(s) 137, 410, 826, 847
BmiI GGNNCC 3 cut(s) 6, 426, 828
BmrI ACTGGG 1 cut(s) 942
BmsI GCATC 3 cut(s) 203, 719, 799
BmuI ACTGGG 1 cut(s) 942
BpiI GAAGAC 2 cut(s) 249, 696
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 2 cut(s) 111, 345
BpuEI CTTGAG 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 133, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 842, 937
BseDI CCNNGG 2 cut(s) 133, 790
BseGI GGATG 2 cut(s) 218, 546
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 102, 359
BseNI ACTGG 2 cut(s) 842, 937
BsePI GCGCGC 1 cut(s) 513
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 6 cut(s) 24, 115, 182, 503, 736, 758
BseYI CCCAGC 1 cut(s) 662
Bsh1236I CGCG 3 cut(s) 515, 653, 832
BshFI GGCC 3 cut(s) 95, 412, 789
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 296, 435
BsmI GAATGC 2 cut(s) 674, 752
BsnI GGCC 3 cut(s) 95, 412, 789
Bsp143I GATC 4 cut(s) 4, 654, 736, 937
BspACI CCGC 5 cut(s) 23, 380, 392, 616, 830
BspANI GGCC 3 cut(s) 95, 412, 789
BspCNI CTCAG 2 cut(s) 103, 358
BspFNI CGCG 3 cut(s) 515, 653, 832
BspLI GGNNCC 3 cut(s) 6, 426, 828
BspMAI CTGCAG 2 cut(s) 493, 748
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 3 cut(s) 12, 731, 945
BspTI CTTAAG 1 cut(s) 679
BsrI ACTGG 2 cut(s) 842, 937
BssECI CCNNGG 2 cut(s) 133, 790
BssHII GCGCGC 1 cut(s) 513
BssMI GATC 4 cut(s) 4, 654, 736, 937
Bst4CI ACNGT 3 cut(s) 547, 599, 692
BstAFI CTTAAG 1 cut(s) 679
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 2 cut(s) 111, 345
BstDSI CCRYGG 1 cut(s) 790
BstF5I GGATG 2 cut(s) 218, 546
BstFNI CGCG 3 cut(s) 515, 653, 832
BstHHI GCGC 5 cut(s) 515, 517, 577, 653, 834
BstKTI GATC 4 cut(s) 7, 657, 739, 940
BstMAI GTCTC 2 cut(s) 296, 435
BstMBI GATC 4 cut(s) 4, 654, 736, 937
BstMWI GCNNNNNNNGC 3 cut(s) 20, 389, 659
BstSFI CTRYAG 3 cut(s) 15, 489, 744
BstUI CGCG 3 cut(s) 515, 653, 832
BstV1I GCAGC 6 cut(s) 24, 115, 182, 503, 736, 758
BstV2I GAAGAC 2 cut(s) 249, 696
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 95, 412, 789
BtgI CCRYGG 1 cut(s) 790
BtsCI GGATG 2 cut(s) 218, 546
BtsIMutI CAGTG 2 cut(s) 595, 849
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 515
CfoI GCGC 5 cut(s) 515, 517, 577, 653, 834
Cfr13I GGNCC 4 cut(s) 137, 410, 826, 847
CseI GACGC 2 cut(s) 227, 243
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 4 cut(s) 99, 187, 194, 536
DdeI CTNAG 2 cut(s) 111, 345
DpnI GATC 4 cut(s) 6, 656, 738, 939
DpnII GATC 4 cut(s) 4, 654, 736, 937
DraIII CACNNNGTG 1 cut(s) 796
Eco147I AGGCCT 1 cut(s) 95
Eco47I GGWCC 3 cut(s) 137, 826, 847
Eco57I CTGAAG 1 cut(s) 690
EcoT22I ATGCAT 1 cut(s) 781
FaeI CATG 4 cut(s) 102, 190, 197, 539
FatI CATG 4 cut(s) 98, 186, 193, 535
FauI CCCGC 2 cut(s) 16, 837
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 7 cut(s) 38, 129, 171, 381, 492, 747, 750
FokI GGATG 2 cut(s) 225, 553
Fsp4HI GCNGC 7 cut(s) 38, 129, 171, 381, 492, 747, 750
FspAI RTGCGCAY 1 cut(s) 576
FspBI CTAG 3 cut(s) 60, 240, 584
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 5 cut(s) 514, 516, 576, 652, 833
GluI GCNGC 7 cut(s) 38, 129, 171, 381, 492, 747, 750
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 3 cut(s) 95, 412, 789
HapII CCGG 1 cut(s) 167
HgaI GACGC 2 cut(s) 227, 243
HhaI GCGC 5 cut(s) 515, 517, 577, 653, 834
Hin1II CATG 4 cut(s) 102, 190, 197, 539
Hin6I GCGC 5 cut(s) 513, 515, 575, 651, 832
HinP1I GCGC 5 cut(s) 513, 515, 575, 651, 832
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 4 cut(s) 236, 443, 476, 554
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 832
Hpy188I TCNGA 7 cut(s) 125, 137, 154, 262, 293, 318, 930
Hpy188III TCNNGA 3 cut(s) 405, 529, 610
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 62, 429, 910
HpyCH4III ACNGT 3 cut(s) 547, 599, 692
HpyCH4V TGCA 6 cut(s) 397, 491, 746, 752, 779, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 389, 659
HpyF3I CTNAG 2 cut(s) 111, 345
Hsp92II CATG 4 cut(s) 102, 190, 197, 539
HspAI GCGC 5 cut(s) 513, 515, 575, 651, 832
Kzo9I GATC 4 cut(s) 4, 654, 736, 937
LmnI GCTCC 2 cut(s) 460, 844
Lsp1109I GCAGC 6 cut(s) 24, 115, 182, 503, 736, 758
LweI GCATC 3 cut(s) 203, 719, 799
MaeI CTAG 3 cut(s) 60, 240, 584
MaeIII GTNAC 1 cut(s) 589
MalI GATC 4 cut(s) 6, 656, 738, 939
MboI GATC 4 cut(s) 4, 654, 736, 937
MboII GAAGA 5 cut(s) 249, 471, 563, 696, 885
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 82, 225, 417
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 764, 874
Mph1103I ATGCAT 1 cut(s) 781
MseI TTAA 5 cut(s) 45, 420, 620, 680, 719
MspA1I CMGCKG 2 cut(s) 662, 749
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 1 cut(s) 167
Mva1269I GAATGC 2 cut(s) 674, 752
MvnI CGCG 3 cut(s) 515, 653, 832
MwoI GCNNNNNNNGC 3 cut(s) 20, 389, 659
NdeI CATATG 1 cut(s) 250
NdeII GATC 4 cut(s) 4, 654, 736, 937
NlaIII CATG 4 cut(s) 102, 190, 197, 539
NlaIV GGNNCC 3 cut(s) 6, 426, 828
NsbI TGCGCA 1 cut(s) 576
NsiI ATGCAT 1 cut(s) 781
PauI GCGCGC 1 cut(s) 513
PceI AGGCCT 1 cut(s) 95
PctI GAATGC 2 cut(s) 674, 752
PfeI GAWTC 3 cut(s) 236, 476, 554
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 7 cut(s) 39, 130, 172, 382, 493, 748, 751
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 662
PspN4I GGNNCC 3 cut(s) 6, 426, 828
PspPI GGNCC 4 cut(s) 137, 410, 826, 847
PstI CTGCAG 2 cut(s) 493, 748
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 119
PteI GCGCGC 1 cut(s) 513
PvuII CAGCTG 2 cut(s) 662, 749
SaqAI TTAA 5 cut(s) 45, 420, 620, 680, 719
SatI GCNGC 7 cut(s) 38, 129, 171, 381, 492, 747, 750
Sau3AI GATC 4 cut(s) 4, 654, 736, 937
Sau96I GGNCC 4 cut(s) 137, 410, 826, 847
SchI GAGTC 1 cut(s) 437
SfaNI GCATC 3 cut(s) 203, 719, 799
SfcI CTRYAG 3 cut(s) 15, 489, 744
SinI GGWCC 3 cut(s) 137, 826, 847
SmlI CTYRAG 2 cut(s) 679, 696
SmoI CTYRAG 2 cut(s) 679, 696
Sse9I AATT 3 cut(s) 82, 225, 417
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 5 cut(s) 23, 380, 392, 616, 830
SspI AATATT 1 cut(s) 499
SspMI CTAG 3 cut(s) 60, 240, 584
StuI AGGCCT 1 cut(s) 95
TaaI ACNGT 3 cut(s) 547, 599, 692
TaqI TCGA 5 cut(s) 309, 464, 530, 549, 756
TasI AATT 3 cut(s) 82, 225, 417
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 3 cut(s) 236, 476, 554
Tru1I TTAA 5 cut(s) 45, 420, 620, 680, 719
Tru9I TTAA 5 cut(s) 45, 420, 620, 680, 719
TscAI CASTG 2 cut(s) 602, 849
TseI GCWGC 6 cut(s) 37, 128, 170, 491, 746, 749
TspDTI ATGAA 1 cut(s) 882
TspRI CASTG 2 cut(s) 602, 849
Tth111I GACNNNGTC 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 679
VpaK11BI GGWCC 3 cut(s) 137, 826, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 3 cut(s) 60, 240, 584
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.