Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013299

Physical Location & Seq

Genomic Coordinates Forward (+)

35189826 .. 35195379

Gene Structure 5554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0202800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGATTGTCGCCTGACAATGTTCATGGACTCACTCTAGCGGTTTCTTCAAGCGTTTTTATTGGGACTAGCTTTATAATCAAGAAGAAAGGCCTCAAAAAAGCAGGCACTACAGGAGTTAGAGCAGGGTCGGGAGGGCATACATACTTGTATGAACCCTTATGGTGGGCTGGGATGATATCAATGATTGTGGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCAGCAATTCTTGTAACTCCCTTGGGAGCATTAAGTATTATTGTCAGTGCAGTGCTTGCTCATTTTGTTTTGGAGGAAAAACTGCATATATTTGGAGTGCTTGGTTGTGTTCTTTGCATGGTGGGCTCTACAACTATTGTTTTGAATGCTCCACAAGAGAGACAAATAAATTCTGTTAAGCAAGTGTGGCATCATGCTACACAGCCAGGTTTTATTGTCTACACAGTTTTCGTACTGATTCTCGTTGCCGTTCTCATTTTCAAATTTGTTCCACGTTATGGGAAGACCCACCTGATCGTATATGTTGGAATTTGTTCTCTTATGGGCTCTCTCACGGTTATGAGTGTGAAAGCAGTGGGTATCGCTCTGAAGCTGTCCTTTTCAGGAACAAACCAATTTAAATACTATGAGACATGGGTTTTTGCAGTGATAGTGGCAGTCTGTTGTATTTTTCAGATTAACTATTTAAACAAGGCTCTGGACACTTTTAACACTGCTGTAATATCTCCAGTCTACTATGTGATGTTTACAATATTCACCATTCTTGCCAGCGTTATCATGTTTAAGGACTGGGAGTCGCAAAGTGCGTCTCAGATTGTGACTGAATTGTGTGGTTTTGTTACTATCCTATCTGGTACCTTTCTACTTCACAAAACCAGAGATATGGGAAATGATCCACCTAAGGAACCTGTCTTCCAAAGTCCTCGTGCGTCAGAAGCACCTGCATCTCCACTTCCTATTAGCCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

35.47

Weight (kDa)

9.06

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 298	2.5e-138	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17070 AT3G17070 AT3G42570
fragaria_vesca	FvH4_4g19850
malus_domestica	MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica	Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis	pycom13g13040 pycom16g13010
rosa_chinensis	RchiOBHm_Chr4g0425421
rosa_laevigata	RLG00000007370
rosa_roxburghii	Rroxscaffold_5G00367380
rosa_rugosa	Rorug04G0202800
rosa_samantha	Rh4CG277200 Rh4DG261900
rosa_wichuraiana	Rw4G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AarI	CACCTGC	1 cut(s)	958
Acc36I	ACCTGC	1 cut(s)	958
Acc65I	GGTACC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	863
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	447, 741
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	896
AcsI	RAATTY	3 cut(s)	397, 491, 537
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	2 cut(s)	462, 865
AfiI	CCNNNNNNNGG	2 cut(s)	165, 506
AgsI	TTSAA	3 cut(s)	51, 373, 490
AhdI	GACNNNNNGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	3 cut(s)	72, 203, 601
AluI	AGCT	3 cut(s)	72, 203, 601
Alw26I	GTCTC	3 cut(s)	382, 632, 822
AlwI	GGATC	1 cut(s)	896
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	3 cut(s)	397, 491, 537
Asp700I	GAANNNNTTC	1 cut(s)	541
Asp718I	GGTACC	1 cut(s)	863
AsuHPI	GGTGA	1 cut(s)	757
AxyI	CCTNAGG	1 cut(s)	909
BanI	GGYRCC	1 cut(s)	863
BanII	GRGCYC	2 cut(s)	356, 557
BauI	CACGAG	1 cut(s)	933
BbsI	GAAGAC	2 cut(s)	518, 913
BbvI	GCAGC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	382, 632, 822
BfaI	CTAG	2 cut(s)	38, 69
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	958
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmiI	GGNNCC	2 cut(s)	865, 915
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	808
BmsI	GCATC	2 cut(s)	427, 962
BmuI	ACTGGG	1 cut(s)	808
BpiI	GAAGAC	2 cut(s)	518, 913
BpmI	CTGGAG	2 cut(s)	213, 720
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 506
Bse1I	ACTGG	2 cut(s)	737, 803
Bse21I	CCTNAGG	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	165, 506
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	2 cut(s)	737, 803
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	863
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	165, 506
BsmAI	GTCTC	3 cut(s)	382, 632, 822
BsmBI	CGTCTC	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	356, 557
Bsp143I	GATC	2 cut(s)	522, 901
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	865, 915
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	1 cut(s)	896
BspT107I	GGYRCC	1 cut(s)	863
BsrI	ACTGG	2 cut(s)	737, 803
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	522, 901
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	933
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	454, 565
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	106, 285, 778
BstDEI	CTNAG	2 cut(s)	819, 909
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	525, 904
BstMAI	GTCTC	3 cut(s)	382, 632, 822
BstMBI	GATC	2 cut(s)	522, 901
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 218, 284, 351, 415, 944
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	518, 913
BstXI	CCANNNNNNTGG	1 cut(s)	892
Bsu36I	CCTNAGG	1 cut(s)	909
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	4 cut(s)	285, 588, 660, 720
BtsIMutI	CAGTG	5 cut(s)	280, 285, 588, 660, 720
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	3 cut(s)	106, 285, 778
CseI	GACGC	2 cut(s)	804, 927
Csp6I	GTAC	2 cut(s)	461, 864
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	5 cut(s)	26, 346, 422, 642, 787
CviQI	GTAC	2 cut(s)	461, 864
DdeI	CTNAG	2 cut(s)	819, 909
DpnI	GATC	2 cut(s)	524, 903
DpnII	GATC	2 cut(s)	522, 901
DraI	TTTAAA	2 cut(s)	628, 696
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1105I	GACNNNNNGTC	1 cut(s)	802
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	93
Eco24I	GRGCYC	2 cut(s)	356, 557
Eco32I	GATATC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	909
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	356, 557
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	822
FaeI	CATG	5 cut(s)	29, 349, 425, 645, 790
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	5 cut(s)	25, 345, 421, 641, 786
FblI	GTMKAC	2 cut(s)	447, 741
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	2 cut(s)	356, 557
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	38, 69
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	213, 720
HaeIII	GGCC	1 cut(s)	93
HgaI	GACGC	2 cut(s)	804, 927
Hin1II	CATG	5 cut(s)	29, 349, 425, 645, 790
HinfI	GANTC	3 cut(s)	30, 466, 803
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	3 cut(s)	448, 742, 756
Hpy188I	TCNGA	4 cut(s)	597, 684, 822, 943
Hpy188III	TCNNGA	4 cut(s)	82, 132, 612, 707
Hpy8I	GTNNAC	3 cut(s)	448, 742, 756
HpyCH4III	ACNGT	2 cut(s)	454, 565
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	221, 278, 313, 345, 653, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 218, 284, 351, 415, 944
HpyF3I	CTNAG	2 cut(s)	819, 909
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	5 cut(s)	29, 349, 425, 645, 790
KpnI	GGTACC	1 cut(s)	867
Kzo9I	GATC	2 cut(s)	522, 901
LmnI	GCTCC	3 cut(s)	232, 254, 382
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	2 cut(s)	427, 962
MaeI	CTAG	2 cut(s)	38, 69
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	241, 826, 847
MalI	GATC	2 cut(s)	524, 903
MboI	GATC	2 cut(s)	522, 901
MboII	GAAGA	4 cut(s)	39, 97, 523, 913
MhlI	GDGCHC	2 cut(s)	356, 557
MluCI	AATT	7 cut(s)	205, 234, 397, 491, 537, 623, 833
MlyI	GAGTC	2 cut(s)	24, 812
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	104, 128, 295, 942
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	7 cut(s)	260, 405, 627, 687, 695, 717, 792
MslI	CAYNNNNRTG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	6 cut(s)	209, 218, 284, 351, 415, 944
NdeII	GATC	2 cut(s)	522, 901
NlaIII	CATG	5 cut(s)	29, 349, 425, 645, 790
NlaIV	GGNNCC	2 cut(s)	865, 915
NmuCI	GTSAC	1 cut(s)	826
NsiI	ATGCAT	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	958
PceI	AGGCCT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	812
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	24, 811
PpsI	GAGTC	2 cut(s)	24, 811
PsiI	TTATAA	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	865, 915
RsaI	GTAC	2 cut(s)	462, 865
RsaNI	GTAC	2 cut(s)	461, 864
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	7 cut(s)	260, 405, 627, 687, 695, 717, 792
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	522, 901
SchI	GAGTC	2 cut(s)	24, 812
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	356, 557
SfaNI	GCATC	2 cut(s)	427, 962
SfcI	CTRYAG	1 cut(s)	111
SmiI	ATTTAAAT	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	566
Sse9I	AATT	7 cut(s)	205, 234, 397, 491, 537, 623, 833
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	2 cut(s)	38, 69
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	249
SwaI	ATTTAAAT	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	454, 565
TaiI	ACGT	1 cut(s)	505
TasI	AATT	7 cut(s)	205, 234, 397, 491, 537, 623, 833
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	7 cut(s)	260, 405, 627, 687, 695, 717, 792
Tru9I	TTAA	7 cut(s)	260, 405, 627, 687, 695, 717, 792
TscAI	CASTG	5 cut(s)	280, 285, 588, 660, 727
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	2 cut(s)	14, 168
TspRI	CASTG	5 cut(s)	280, 285, 588, 660, 727
Van91I	CCANNNNNTGG	1 cut(s)	506
XapI	RAATTY	3 cut(s)	397, 491, 537
XmiI	GTMKAC	2 cut(s)	447, 741
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	2 cut(s)	38, 69
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.