Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013299

Physical Location & Seq

Genomic Coordinates Reverse (-)

9179062 .. 9180808

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G116500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATCTGAGAGCTATAGTGGTAGGCATATCTCTGTTTGTGTTCAGCATTGGAGCTGAAGGGCAAGGGCTTTCTTATAATTTCTATGAGAACTCATGCCCACAAGTCGAGGCCATTGTTAGAGCTGCCCTCCAACCTATTTTTCTCGCTGATCCCACTGCTCCTGCAGCTCTGTTGAGGCTCATGTTCCATGATTGCCAAGTTCAGGGCTGTGATGCTTCAATTCTTGTGGATCCAAATGAGAACACTGTGTCATCGGAGATGGCTGCAGGGAAAAACTTTGGTATCAGAAAGAGAGAGTCAATCAACATTCTCAAGTCAATAGTTGAATTAGAATGTCCCCAACAGGTTTCTTGCTCCGACATTCTTGTCTTAACTGCTCGGGAGGCAGTGTCTGCGTCAGGAGGGCCACAGATAAAGGTTCCTTTGGGAAGAAGAGACTCTTCTGTTCCTCCAAGCTATAAGCTTGCAGATTCTTTGCTTCCTTCTGCCACCATCGGAGTTGATGGCATGCTTCAACTATTTGCAAAGAAAGGGATGACAGTCGAAGAATCTGTGGCCATAATGGGCGCGCACACACTAGGGGTGACACATTGTTTGAACATTCTAAATCGTCTAAGCAGACTTGATCAAGGTGGGCGTGTAGAAGGCATGGCGCCCATGTTTGAAGCATTCCTAAGGATAAACTGTCCTCAAGGCTCTTTGACATCAAATGCAAGCTTCGTTCTTAATGACCCTACAACACTTACATTCGACAACCACTACTACAATAATGTAATTAGAGGCCATGGGGTACTTAGAGTTGATGCTGAAATGGTGATGGACCCGCGCACAGCTCTCGCTGTCAAGAGATTTGCTGCCGATCAGGATGGTTTCTTTCAGGCATTTTCTTCTGCCTTTGTCAAGTTCTCTAGCTCTGGTGTCCTGAGTGGGAATCAAGGTGTTGTTAGAAAGATATGCAATGTATTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

34.86

Weight (kDa)

5.78

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17070 AT3G17070 AT3G42570
fragaria_vesca	FvH4_4g19850
malus_domestica	MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica	Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis	pycom13g13040 pycom16g13010
rosa_chinensis	RchiOBHm_Chr4g0425421
rosa_laevigata	RLG00000007370
rosa_roxburghii	Rroxscaffold_5G00367380
rosa_rugosa	Rorug04G0202800
rosa_samantha	Rh4CG277200 Rh4DG261900
rosa_wichuraiana	Rw4G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AasI	GACNNNNNNGTC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	655
AccII	CGCG	2 cut(s)	572, 829
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	4 cut(s)	12, 146, 227, 240
AcoI	YGGCCR	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	1 cut(s)	795
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	5 cut(s)	222, 329, 518, 601, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	9 cut(s)	14, 56, 125, 170, 459, 466, 720, 836, 915
AluI	AGCT	9 cut(s)	14, 56, 125, 170, 459, 466, 720, 836, 915
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	4 cut(s)	12, 146, 227, 240
AlwNI	CAGNNNCTG	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	4 cut(s)	111, 407, 558, 784
ApeKI	GCWGC	4 cut(s)	125, 167, 266, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspLEI	GCGC	4 cut(s)	572, 574, 658, 831
AspS9I	GGNCC	2 cut(s)	407, 823
AsuHPI	GGTGA	2 cut(s)	598, 829
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	823
AxyI	CCTNAGG	1 cut(s)	677
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	655
BbvI	GCAGC	4 cut(s)	112, 179, 253, 844
BccI	CCATC	5 cut(s)	256, 500, 503, 814, 863
BcgI	CGANNNNNNTGC	2 cut(s)	820, 854
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	2 cut(s)	581, 912
BfmI	CTRYAG	3 cut(s)	15, 165, 267
BfoI	RGCGCY	1 cut(s)	659
BisI	GCNGC	4 cut(s)	126, 168, 267, 858
BlsI	GCNGC	4 cut(s)	127, 169, 268, 859
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	407, 823
BmiI	GGNNCC	4 cut(s)	234, 423, 657, 825
BmsI	GCATC	2 cut(s)	205, 796
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpuEI	CTTGAG	2 cut(s)	299, 678
BsaHI	GRCGYC	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	787
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	967
BseDI	CCNNGG	1 cut(s)	787
BseGI	GGATG	2 cut(s)	543, 874
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	967
BseMII	CTCAG	1 cut(s)	917
BsePI	GCGCGC	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	112, 179, 253, 844
Bsh1236I	CGCG	2 cut(s)	572, 829
BshFI	GGCC	4 cut(s)	113, 409, 560, 786
BshNI	GGYRCC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	4 cut(s)	113, 409, 560, 786
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	4, 151, 232, 628, 862
Bsp19I	CCATGG	1 cut(s)	787
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	4 cut(s)	113, 409, 560, 786
BspCNI	CTCAG	1 cut(s)	918
BspFNI	CGCG	2 cut(s)	572, 829
BspLI	GGNNCC	4 cut(s)	234, 423, 657, 825
BspMAI	CTGCAG	2 cut(s)	169, 271
BspPI	GGATC	4 cut(s)	12, 146, 227, 240
BspT107I	GGYRCC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	967
BssECI	CCNNGG	1 cut(s)	787
BssHII	GCGCGC	1 cut(s)	570
BssMI	GATC	5 cut(s)	4, 151, 232, 628, 862
BssNI	GRCGYC	1 cut(s)	656
BssT1I	CCWWGG	1 cut(s)	787
Bst4CI	ACNGT	3 cut(s)	250, 544, 689
Bst6I	CTCTTC	2 cut(s)	430, 448
BstACI	GRCGYC	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	468, 512, 572, 718
BstDEI	CTNAG	5 cut(s)	8, 617, 677, 797, 926
BstDSI	CCRYGG	1 cut(s)	787
BstF5I	GGATG	2 cut(s)	543, 874
BstFNI	CGCG	2 cut(s)	572, 829
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	4 cut(s)	572, 574, 658, 831
BstKTI	GATC	5 cut(s)	7, 154, 235, 631, 865
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	5 cut(s)	4, 151, 232, 628, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 386, 395
BstNSI	RCATGY	1 cut(s)	514
BstSFI	CTRYAG	3 cut(s)	15, 165, 267
BstUI	CGCG	2 cut(s)	572, 829
BstV1I	GCAGC	4 cut(s)	112, 179, 253, 844
BstX2I	RGATCY	2 cut(s)	4, 232
BstYI	RGATCY	2 cut(s)	4, 232
Bsu36I	CCTNAGG	1 cut(s)	677
BsuRI	GGCC	4 cut(s)	113, 409, 560, 786
BtgI	CCRYGG	1 cut(s)	787
BtsCI	GGATG	2 cut(s)	543, 874
BtsI	GCAGTG	2 cut(s)	156, 396
BtsIMutI	CAGTG	3 cut(s)	156, 246, 396
Cac8I	GCNNGC	4 cut(s)	468, 512, 572, 718
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	4 cut(s)	572, 574, 658, 831
Cfr13I	GGNCC	2 cut(s)	407, 823
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	794
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	7 cut(s)	96, 184, 191, 511, 652, 661, 788
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	5 cut(s)	8, 617, 677, 797, 926
DinI	GGCGCC	1 cut(s)	657
DpnI	GATC	5 cut(s)	6, 153, 234, 630, 864
DpnII	GATC	5 cut(s)	4, 151, 232, 628, 862
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	430, 448
EarI	CTCTTC	2 cut(s)	430, 448
Eco130I	CCWWGG	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	787
EgeI	GGCGCC	1 cut(s)	657
EheI	GGCGCC	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	787
FaeI	CATG	7 cut(s)	99, 187, 194, 514, 655, 664, 791
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	7 cut(s)	95, 183, 190, 510, 651, 660, 787
FauI	CCCGC	1 cut(s)	834
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	4 cut(s)	126, 168, 267, 858
FokI	GGATG	2 cut(s)	550, 881
Fsp4HI	GCNGC	4 cut(s)	126, 168, 267, 858
FspBI	CTAG	2 cut(s)	581, 912
GlaI	GCGC	4 cut(s)	571, 573, 657, 830
GluI	GCNGC	4 cut(s)	126, 168, 267, 858
HaeII	RGCGCY	1 cut(s)	659
HaeIII	GGCC	4 cut(s)	113, 409, 560, 786
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	4 cut(s)	572, 574, 658, 831
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	7 cut(s)	99, 187, 194, 514, 655, 664, 791
Hin6I	GCGC	4 cut(s)	570, 572, 656, 829
HinP1I	GCGC	4 cut(s)	570, 572, 656, 829
HindIII	AAGCTT	2 cut(s)	464, 718
HinfI	GANTC	5 cut(s)	299, 440, 473, 551, 934
HphI	GGTGA	2 cut(s)	598, 829
Hpy188I	TCNGA	5 cut(s)	9, 259, 290, 361, 500
Hpy188III	TCNNGA	5 cut(s)	383, 402, 847, 866, 925
HpyAV	CCTTC	3 cut(s)	53, 495, 641
HpyCH4III	ACNGT	3 cut(s)	250, 544, 689
HpyCH4V	TGCA	6 cut(s)	167, 269, 470, 527, 716, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 386, 395
HpyF3I	CTNAG	5 cut(s)	8, 617, 677, 797, 926
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	7 cut(s)	99, 187, 194, 514, 655, 664, 791
HspAI	GCGC	4 cut(s)	570, 572, 656, 829
KasI	GGCGCC	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	4, 151, 232, 628, 862
LmnI	GCTCC	3 cut(s)	53, 166, 362
LpnPI	CCDG	9 cut(s)	177, 191, 255, 332, 387, 851, 866, 903, 938
Lsp1109I	GCAGC	4 cut(s)	112, 179, 253, 844
LweI	GCATC	2 cut(s)	205, 796
MaeI	CTAG	2 cut(s)	581, 912
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	5 cut(s)	6, 153, 234, 630, 864
MboI	GATC	5 cut(s)	4, 151, 232, 628, 862
MboII	GAAGA	5 cut(s)	435, 444, 447, 560, 882
MflI	RGATCY	2 cut(s)	4, 232
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	4 cut(s)	79, 222, 329, 777
MluNI	TGGCCA	1 cut(s)	560
Mly113I	GGCGCC	1 cut(s)	656
MlyI	GAGTC	2 cut(s)	308, 434
MmeI	TCCRAC	2 cut(s)	157, 384
MnlI	CCTC	8 cut(s)	103, 140, 171, 379, 398, 462, 702, 776
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	2 cut(s)	374, 729
Msp20I	TGGCCA	1 cut(s)	560
Mva1269I	GAATGC	1 cut(s)	671
MvnI	CGCG	2 cut(s)	572, 829
MwoI	GCNNNNNNNGC	3 cut(s)	167, 386, 395
NarI	GGCGCC	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	787
NdeII	GATC	5 cut(s)	4, 151, 232, 628, 862
NlaIII	CATG	7 cut(s)	99, 187, 194, 514, 655, 664, 791
NlaIV	GGNNCC	4 cut(s)	234, 423, 657, 825
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	514
PauI	GCGCGC	1 cut(s)	570
PctI	GAATGC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	473, 551, 934
PkrI	GCNGC	4 cut(s)	127, 169, 268, 859
PleI	GAGTC	2 cut(s)	307, 434
PluTI	GGCGCC	1 cut(s)	659
PpsI	GAGTC	2 cut(s)	307, 434
PsiI	TTATAA	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	234, 423, 657, 825
PspPI	GGNCC	2 cut(s)	407, 823
PstI	CTGCAG	2 cut(s)	169, 271
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	4, 232
PteI	GCGCGC	1 cut(s)	570
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	374, 729
SatI	GCNGC	4 cut(s)	126, 168, 267, 858
Sau3AI	GATC	5 cut(s)	4, 151, 232, 628, 862
Sau96I	GGNCC	2 cut(s)	407, 823
SchI	GAGTC	2 cut(s)	308, 434
SfaNI	GCATC	2 cut(s)	205, 796
SfcI	CTRYAG	3 cut(s)	15, 165, 267
SfoI	GGCGCC	1 cut(s)	657
SinI	GGWCC	1 cut(s)	823
SmlI	CTYRAG	2 cut(s)	314, 693
SmoI	CTYRAG	2 cut(s)	314, 693
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	4 cut(s)	79, 222, 329, 777
SsiI	CCGC	1 cut(s)	827
SspDI	GGCGCC	1 cut(s)	655
SspMI	CTAG	2 cut(s)	581, 912
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	3 cut(s)	250, 544, 689
TaqI	TCGA	3 cut(s)	108, 546, 753
TasI	AATT	4 cut(s)	79, 222, 329, 777
TfiI	GAWTC	3 cut(s)	473, 551, 934
Tru1I	TTAA	2 cut(s)	374, 729
Tru9I	TTAA	2 cut(s)	374, 729
TscAI	CASTG	3 cut(s)	163, 253, 396
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	4 cut(s)	125, 167, 266, 857
Tsp45I	GTSAC	1 cut(s)	586
TspRI	CASTG	3 cut(s)	163, 253, 396
VpaK11BI	GGWCC	1 cut(s)	823
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	2 cut(s)	581, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.