Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013299

Physical Location & Seq

Genomic Coordinates Reverse (-)

11978084 .. 11979797

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1152800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATCTGATAGCTATAGTTGTAGGACTACATCTCTTTGTTTTCGGCATTTGTGTTGAAGGGCAAGGCCTTTCTTATAATTTCTATGAGAATTCATGCCCACAAGTTGAAGCCATTGTTAGAGCTGCCATCCAGCCTATTTTTCTTACTGATCCCACTTCTCCTGCTGCTTTTCTGAGGCTCATGTTCCATGATTGCCAAGTTCAGGGCTGTGATGCTTCAATTCTTGTGGATCTGAATGCGAACAACGTGCCATCCGAGATGGCCGCAGGGAAAAACTTCGGCATCCGAAAGAGGGAGTCGATAAACATACTGAAATCAATGGTTGAATTACAATGTCCCCAACAGGTATCTTGTGCTGACATTCTTGTATTGGCGGCTCGAGAAGCTGTGGTTGTGTCAGGAGGGCCGCAAATAAAGGTTGCTTTGGGAAGGAGAGATTCCCCTTTTGCTCCAAGCTACAAGCATGCAGATTCTTTGCTTCCTTCTGCCACTACTGGAGTTGATGGCATGCTTCAATTATTTGCCAATAAAGAAATGACAGTTGAAGAATCTGTGGCCATCATGGGTGCCCACACGCTAGGAGTTACGCACTGTTTGAACATCCTAAATCGTCTAAACCAAGCAGATGAAGGTGGCCAAGTACAAGGCATGGCACCTGGGTTTGAATCGTTTTTAAGGCTAAACTGTCCACAAGGGTCTTTGGCATCAAATGCAAGCTTTGTTCTTAATGACCCTACAACACTTACATTTGACAACCACTACTACAAGAATGTAATTAGAGGCCACGGGGTCCTCAGAGTTGATACTGAAATGATAATGGACCCGCGCACAGCTATGGCTGTCAAGCGATTTGCTGCGAATCAGGATGATTTCTTTCAGGCGTTTTCTTCTGCCTTTGTCAAGCTCTCCAACTCAGGAGTTTTAACTGGGAATCAAGGCGTTGTCAGAAAGAATTGCAATGCATTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

35.02

Weight (kDa)

5.65

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	40 - 288	1.9e-65	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17070 AT3G17070 AT3G42570
fragaria_vesca	FvH4_4g19850
malus_domestica	MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica	Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis	pycom13g13040 pycom16g13010
rosa_chinensis	RchiOBHm_Chr4g0425421
rosa_laevigata	RLG00000007370
rosa_roxburghii	Rroxscaffold_5G00367380
rosa_rugosa	Rorug04G0202800
rosa_samantha	Rh4CG277200 Rh4DG261900
rosa_wichuraiana	Rw4G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	569, 655
AccII	CGCG	1 cut(s)	829
AciI	CCGC	4 cut(s)	267, 377, 410, 827
AclWI	GGATC	3 cut(s)	12, 146, 240
AcoI	YGGCCR	3 cut(s)	264, 558, 637
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	205, 295
AgsI	TTSAA	8 cut(s)	59, 110, 222, 329, 518, 548, 601, 668
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	7 cut(s)	14, 125, 389, 459, 720, 836, 907
AluI	AGCT	7 cut(s)	14, 125, 389, 459, 720, 836, 907
AlwI	GGATC	3 cut(s)	12, 146, 240
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	6 cut(s)	67, 264, 407, 558, 637, 784
ApeKI	GCWGC	3 cut(s)	125, 167, 857
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	3 cut(s)	407, 793, 823
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	793, 823
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	2 cut(s)	560, 639
BanI	GGYRCC	2 cut(s)	569, 655
BbvI	GCAGC	3 cut(s)	112, 154, 844
BccI	CCATC	5 cut(s)	137, 256, 262, 500, 569
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	1 cut(s)	660
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	6 cut(s)	126, 168, 267, 378, 410, 858
BlsI	GCNGC	6 cut(s)	127, 169, 268, 379, 411, 859
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	2 cut(s)	793, 823
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	407, 793, 823
BmiI	GGNNCC	4 cut(s)	571, 657, 794, 825
BmrFI	CCNGG	1 cut(s)	660
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	3 cut(s)	205, 294, 716
BmuI	ACTGGG	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	659, 787
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 295
Bse1I	ACTGG	2 cut(s)	502, 934
Bse3DI	GCAATG	1 cut(s)	967
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	659, 787
BseGI	GGATG	5 cut(s)	129, 254, 285, 603, 874
BseLI	CCNNNNNNNGG	2 cut(s)	205, 295
BseMI	GCAATG	1 cut(s)	967
BseMII	CTCAG	3 cut(s)	167, 811, 930
BseNI	ACTGG	2 cut(s)	502, 934
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	112, 154, 844
Bsh1236I	CGCG	1 cut(s)	829
BshFI	GGCC	6 cut(s)	69, 266, 409, 560, 639, 786
BshNI	GGYRCC	2 cut(s)	569, 655
BsiHKCI	CYCGRG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	205, 295
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	6 cut(s)	69, 266, 409, 560, 639, 786
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	4, 151, 232
BspACI	CCGC	4 cut(s)	267, 377, 410, 827
BspANI	GGCC	6 cut(s)	69, 266, 409, 560, 639, 786
BspCNI	CTCAG	3 cut(s)	168, 810, 929
BspFNI	CGCG	1 cut(s)	829
BspLI	GGNNCC	4 cut(s)	571, 657, 794, 825
BspPI	GGATC	3 cut(s)	12, 146, 240
BspT107I	GGYRCC	2 cut(s)	569, 655
BsrDI	GCAATG	1 cut(s)	967
BsrI	ACTGG	2 cut(s)	502, 934
BssECI	CCNNGG	2 cut(s)	659, 787
BssMI	GATC	3 cut(s)	4, 151, 232
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	544, 596, 689
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	468, 512, 718
BstDEI	CTNAG	3 cut(s)	176, 797, 916
BstDSI	CCRYGG	1 cut(s)	787
BstF5I	GGATG	5 cut(s)	129, 254, 285, 603, 874
BstFNI	CGCG	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	3 cut(s)	7, 154, 235
BstMBI	GATC	3 cut(s)	4, 151, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 713
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	2 cut(s)	470, 514
BstSCI	CCNGG	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	3 cut(s)	112, 154, 844
BstX2I	RGATCY	2 cut(s)	4, 232
BstYI	RGATCY	2 cut(s)	4, 232
BsuRI	GGCC	6 cut(s)	69, 266, 409, 560, 639, 786
BtgI	CCRYGG	1 cut(s)	787
BtsCI	GGATG	5 cut(s)	129, 254, 285, 603, 874
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	3 cut(s)	468, 512, 718
CfoI	GCGC	1 cut(s)	831
Cfr13I	GGNCC	3 cut(s)	407, 793, 823
Csp6I	GTAC	1 cut(s)	644
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	7 cut(s)	96, 184, 191, 467, 511, 565, 652
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	3 cut(s)	176, 797, 916
DpnI	GATC	3 cut(s)	6, 153, 234
DpnII	GATC	3 cut(s)	4, 151, 232
EaeI	YGGCCR	3 cut(s)	264, 558, 637
Eco147I	AGGCCT	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	793, 823
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	658
EcoT22I	ATGCAT	1 cut(s)	967
FaeI	CATG	7 cut(s)	99, 187, 194, 470, 514, 568, 655
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	7 cut(s)	95, 183, 190, 466, 510, 564, 651
FauI	CCCGC	1 cut(s)	834
Fnu4HI	GCNGC	6 cut(s)	126, 168, 267, 378, 410, 858
FokI	GGATG	5 cut(s)	116, 241, 272, 590, 881
Fsp4HI	GCNGC	6 cut(s)	126, 168, 267, 378, 410, 858
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	6 cut(s)	126, 168, 267, 378, 410, 858
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	6 cut(s)	69, 266, 409, 560, 639, 786
HhaI	GCGC	1 cut(s)	831
Hin1II	CATG	7 cut(s)	99, 187, 194, 470, 514, 568, 655
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	7 cut(s)	299, 440, 473, 551, 668, 862, 934
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	7 cut(s)	9, 177, 237, 259, 290, 800, 950
Hpy188III	TCNNGA	4 cut(s)	383, 402, 866, 918
Hpy8I	GTNNAC	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	53, 426, 495, 626
HpyCH4III	ACNGT	3 cut(s)	544, 596, 689
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	470, 716, 960, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 713
HpyF3I	CTNAG	3 cut(s)	176, 797, 916
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	7 cut(s)	99, 187, 194, 470, 514, 568, 655
HspAI	GCGC	1 cut(s)	829
Kzo9I	GATC	3 cut(s)	4, 151, 232
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	3 cut(s)	112, 154, 844
LweI	GCATC	3 cut(s)	205, 294, 716
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	3 cut(s)	6, 153, 234
MboI	GATC	3 cut(s)	4, 151, 232
MboII	GAAGA	2 cut(s)	560, 882
MflI	RGATCY	2 cut(s)	4, 232
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	2 cut(s)	560, 639
MluCI	AATT	7 cut(s)	79, 91, 222, 329, 518, 777, 955
MluNI	TGGCCA	2 cut(s)	560, 639
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	5 cut(s)	171, 288, 398, 776, 806
Mox20I	TGGCCA	2 cut(s)	560, 639
Mph1103I	ATGCAT	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	278
MscI	TGGCCA	2 cut(s)	560, 639
MseI	TTAA	3 cut(s)	677, 729, 926
MslI	CAYNNNNRTG	1 cut(s)	836
Msp20I	TGGCCA	2 cut(s)	560, 639
MspR9I	CCNGG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	829
MwoI	GCNNNNNNNGC	2 cut(s)	386, 713
NdeII	GATC	3 cut(s)	4, 151, 232
NlaIII	CATG	7 cut(s)	99, 187, 194, 470, 514, 568, 655
NlaIV	GGNNCC	4 cut(s)	571, 657, 794, 825
NsiI	ATGCAT	1 cut(s)	967
NspI	RCATGY	2 cut(s)	470, 514
PaeI	GCATGC	2 cut(s)	470, 514
PaeR7I	CTCGAG	1 cut(s)	381
PceI	AGGCCT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	6 cut(s)	440, 473, 551, 668, 862, 934
PkrI	GCNGC	6 cut(s)	127, 169, 268, 379, 411, 859
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	793
PsiI	TTATAA	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	4 cut(s)	571, 657, 794, 825
PspPI	GGNCC	3 cut(s)	407, 793, 823
PspPPI	RGGWCCY	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	4, 232
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	1 cut(s)	836
SaqAI	TTAA	3 cut(s)	677, 729, 926
SatI	GCNGC	6 cut(s)	126, 168, 267, 378, 410, 858
Sau3AI	GATC	3 cut(s)	4, 151, 232
Sau96I	GGNCC	3 cut(s)	407, 793, 823
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	3 cut(s)	205, 294, 716
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	793, 823
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	836
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SphI	GCATGC	2 cut(s)	470, 514
Sse9I	AATT	7 cut(s)	79, 91, 222, 329, 518, 777, 955
SseBI	AGGCCT	1 cut(s)	69
SsiI	CCGC	4 cut(s)	267, 377, 410, 827
SspMI	CTAG	1 cut(s)	581
StuI	AGGCCT	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	658
TaaI	ACNGT	3 cut(s)	544, 596, 689
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	302, 382
TasI	AATT	7 cut(s)	79, 91, 222, 329, 518, 777, 955
TatI	WGTACW	1 cut(s)	643
TauI	GCSGC	3 cut(s)	269, 380, 412
TfiI	GAWTC	6 cut(s)	440, 473, 551, 668, 862, 934
Tru1I	TTAA	3 cut(s)	677, 729, 926
Tru9I	TTAA	3 cut(s)	677, 729, 926
TscAI	CASTG	1 cut(s)	599
TseI	GCWGC	3 cut(s)	125, 167, 857
TspDTI	ATGAA	2 cut(s)	84, 645
TspRI	CASTG	1 cut(s)	599
VpaK11BI	GGWCC	2 cut(s)	793, 823
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	2 cut(s)	470, 514
XhoI	CTCGAG	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.