Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013299

Physical Location & Seq

Genomic Coordinates Reverse (-)

9249913 .. 9251382

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATCACAATGGATCTGATAGCTATAGTTGTAGGAATACATTTCTTTGTTTTCGGCATTTGGGTTGAAGGGCAAGGCCTTCCTTATAATTTCTATGAGAAATCATGCCCACAAGTTGAAGCCATTGTTAGAGCTGCCATCCAGCCTATTTTTCTTACTGATCCCACTTCTCCTGCTGCTTTTCTGAGGCTCATGTTCCATGATTGCCAAGTTCAGGGCTGTGATGCTTCAATTCTTGTGGATCCGAATGCGAACAACGTGCCATCCGAGATGGCCGCAGGGAAAAACTTCGGCATCCGAAAGAGGGAGTCGATAAACATACTGAAATCAATGGTTGAATTACAATGTCCCCAACAGGTATCTTGTGCTGACATTCTTATATTGGCGGCTCGAGAAGCTGTGGTTGTGTCAGGAGGGCCGCAAATAGAGGTTGCTTTGGGAAGGAGGGATTCCCCTTTTGCTCCAAGCTACAAGCATGCAGATTCTTTGCTTCCTTCTGCCACTACTGGAGTTGATGGCATGCTTCAATTATTTGCCAAAAAAGAAATGACAGTTGAAGAATCTGTGGCCATCATGGGTGCGCACACGCTAGGAGTTACGCACTGTTTGAATATCCTAAATCGTCTAAACCAAGCAGATGAAGGTGGCCAAGTACAAGGCATGGCACCTGGGTTTGAATCGTTTTTAAGGCTAAACTGTCCACAAGGGTCTTTGGCATCAAATGCAAGCTTTGTTCTTAATGACCCTACAACACTTACATTTGACAACCACTACTACAAGAATGCAATTAGAGGCCTTGGGGTCCTCAGAGTTGATGCTGAAATGATAATGGACCCGCGCACGGCTATGGCTGTTGAGCGATTTGCTGCGAATCAGGATGATTTCTTTCAGGCGTTTTCTTCTGCCTTTGTCAAGCTCTCCAACTCAGGTGTTTTAACTGGGAATCAAGGCGTTGTCAGAAAGAATTGCAATGCATTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

328

Amino Acids

35.44

Weight (kDa)

5.28

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	43 - 291	5e-65	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17070 AT3G17070 AT3G42570
fragaria_vesca	FvH4_4g19850
malus_domestica	MD13G1152800.v1.1 MD16G1153200.v1.1
prunus_persica	Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1 Prupe.1G116500_v2.0.a1
pyrus_communis	pycom13g13040 pycom16g13010
rosa_chinensis	RchiOBHm_Chr4g0425421
rosa_laevigata	RLG00000007370
rosa_roxburghii	Rroxscaffold_5G00367380
rosa_rugosa	Rorug04G0202800
rosa_samantha	Rh4CG277200 Rh4DG261900
rosa_wichuraiana	Rw4G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
Acc16I	TGCGCA	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	664
AccII	CGCG	1 cut(s)	838
AciI	CCGC	4 cut(s)	276, 386, 419, 836
AclWI	GGATC	4 cut(s)	21, 155, 236, 249
AcoI	YGGCCR	3 cut(s)	273, 567, 646
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	3 cut(s)	214, 304, 841
AgsI	TTSAA	8 cut(s)	68, 119, 231, 338, 527, 557, 610, 677
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	6 cut(s)	23, 134, 398, 468, 729, 916
AluI	AGCT	6 cut(s)	23, 134, 398, 468, 729, 916
AlwI	GGATC	4 cut(s)	21, 155, 236, 249
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	6 cut(s)	76, 273, 416, 567, 646, 793
ApeKI	GCWGC	3 cut(s)	134, 176, 866
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	583, 840
AspS9I	GGNCC	3 cut(s)	416, 802, 832
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	2 cut(s)	802, 832
BalI	TGGCCA	2 cut(s)	569, 648
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	664
BbvI	GCAGC	3 cut(s)	121, 163, 853
BccI	CCATC	5 cut(s)	146, 265, 271, 509, 578
BceAI	ACGGC	1 cut(s)	858
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	669
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	6 cut(s)	135, 177, 276, 387, 419, 867
BlsI	GCNGC	6 cut(s)	136, 178, 277, 388, 420, 868
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	2 cut(s)	802, 832
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	3 cut(s)	416, 802, 832
BmiI	GGNNCC	4 cut(s)	243, 666, 803, 834
BmrFI	CCNGG	1 cut(s)	669
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	4 cut(s)	214, 303, 725, 805
BmuI	ACTGGG	1 cut(s)	948
BpmI	CTGGAG	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	668, 796
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 304, 841
Bse1I	ACTGG	2 cut(s)	511, 943
Bse3DI	GCAATG	1 cut(s)	976
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	668, 796
BseGI	GGATG	4 cut(s)	138, 263, 294, 883
BseLI	CCNNNNNNNGG	3 cut(s)	214, 304, 841
BseMI	GCAATG	1 cut(s)	976
BseMII	CTCAG	3 cut(s)	176, 820, 939
BseNI	ACTGG	2 cut(s)	511, 943
BseXI	GCAGC	3 cut(s)	121, 163, 853
Bsh1236I	CGCG	1 cut(s)	838
BshFI	GGCC	6 cut(s)	78, 275, 418, 569, 648, 795
BshNI	GGYRCC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	214, 304, 841
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	2 cut(s)	253, 787
BsnI	GGCC	6 cut(s)	78, 275, 418, 569, 648, 795
BsoBI	CYCGRG	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	3, 13, 160, 241
BspACI	CCGC	4 cut(s)	276, 386, 419, 836
BspANI	GGCC	6 cut(s)	78, 275, 418, 569, 648, 795
BspCNI	CTCAG	3 cut(s)	177, 819, 938
BspFNI	CGCG	1 cut(s)	838
BspLI	GGNNCC	4 cut(s)	243, 666, 803, 834
BspPI	GGATC	4 cut(s)	21, 155, 236, 249
BspT107I	GGYRCC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	976
BsrI	ACTGG	2 cut(s)	511, 943
BssECI	CCNNGG	2 cut(s)	668, 796
BssMI	GATC	4 cut(s)	3, 13, 160, 241
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	3 cut(s)	553, 605, 698
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	477, 521, 727
BstDEI	CTNAG	3 cut(s)	185, 806, 925
BstF5I	GGATG	4 cut(s)	138, 263, 294, 883
BstFNI	CGCG	1 cut(s)	838
BstHHI	GCGC	2 cut(s)	583, 840
BstKTI	GATC	4 cut(s)	6, 16, 163, 244
BstMBI	GATC	4 cut(s)	3, 13, 160, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 722
BstNI	CCWGG	1 cut(s)	669
BstNSI	RCATGY	2 cut(s)	479, 523
BstSCI	CCNGG	1 cut(s)	667
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	838
BstV1I	GCAGC	3 cut(s)	121, 163, 853
BstX2I	RGATCY	2 cut(s)	13, 241
BstYI	RGATCY	2 cut(s)	13, 241
BsuRI	GGCC	6 cut(s)	78, 275, 418, 569, 648, 795
BtsCI	GGATG	4 cut(s)	138, 263, 294, 883
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	477, 521, 727
CfoI	GCGC	2 cut(s)	583, 840
Cfr13I	GGNCC	3 cut(s)	416, 802, 832
Csp6I	GTAC	1 cut(s)	653
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	7 cut(s)	105, 193, 200, 476, 520, 574, 661
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	3 cut(s)	185, 806, 925
DpnI	GATC	4 cut(s)	5, 15, 162, 243
DpnII	GATC	4 cut(s)	3, 13, 160, 241
EaeI	YGGCCR	3 cut(s)	273, 567, 646
Eco130I	CCWWGG	1 cut(s)	796
Eco147I	AGGCCT	2 cut(s)	78, 795
Eco47I	GGWCC	2 cut(s)	802, 832
Eco88I	CYCGRG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	802
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	796
EcoT22I	ATGCAT	1 cut(s)	976
ErhI	CCWWGG	1 cut(s)	796
FaeI	CATG	7 cut(s)	108, 196, 203, 479, 523, 577, 664
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	7 cut(s)	104, 192, 199, 475, 519, 573, 660
FauI	CCCGC	1 cut(s)	843
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	135, 177, 276, 387, 419, 867
FokI	GGATG	4 cut(s)	125, 250, 281, 890
Fsp4HI	GCNGC	6 cut(s)	135, 177, 276, 387, 419, 867
FspAI	RTGCGCAY	1 cut(s)	582
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	582
GlaI	GCGC	2 cut(s)	582, 839
GluI	GCNGC	6 cut(s)	135, 177, 276, 387, 419, 867
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	6 cut(s)	78, 275, 418, 569, 648, 795
HhaI	GCGC	2 cut(s)	583, 840
Hin1II	CATG	7 cut(s)	108, 196, 203, 479, 523, 577, 664
Hin6I	GCGC	2 cut(s)	581, 838
HinP1I	GCGC	2 cut(s)	581, 838
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	7 cut(s)	308, 449, 482, 560, 677, 871, 943
Hpy166II	GTNNAC	1 cut(s)	701
Hpy188I	TCNGA	7 cut(s)	18, 186, 246, 268, 299, 809, 959
Hpy188III	TCNNGA	3 cut(s)	392, 411, 875
Hpy8I	GTNNAC	1 cut(s)	701
HpyAV	CCTTC	5 cut(s)	62, 89, 435, 504, 635
HpyCH4III	ACNGT	3 cut(s)	553, 605, 698
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	479, 725, 785, 969, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 722
HpyF3I	CTNAG	3 cut(s)	185, 806, 925
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	7 cut(s)	108, 196, 203, 479, 523, 577, 664
HspAI	GCGC	2 cut(s)	581, 838
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 13, 160, 241
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	121, 163, 853
LweI	GCATC	4 cut(s)	214, 303, 725, 805
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	5, 15, 162, 243
MboI	GATC	4 cut(s)	3, 13, 160, 241
MboII	GAAGA	2 cut(s)	569, 891
MflI	RGATCY	2 cut(s)	13, 241
MlsI	TGGCCA	2 cut(s)	569, 648
MluCI	AATT	6 cut(s)	88, 231, 338, 527, 786, 964
MluNI	TGGCCA	2 cut(s)	569, 648
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	945
MnlI	CCTC	7 cut(s)	180, 297, 407, 421, 438, 785, 815
Mox20I	TGGCCA	2 cut(s)	569, 648
Mph1103I	ATGCAT	1 cut(s)	976
MroXI	GAANNNNTTC	1 cut(s)	287
MscI	TGGCCA	2 cut(s)	569, 648
MseI	TTAA	3 cut(s)	686, 738, 935
MslI	CAYNNNNRTG	1 cut(s)	845
Msp20I	TGGCCA	2 cut(s)	569, 648
MspR9I	CCNGG	1 cut(s)	669
Mva1269I	GAATGC	2 cut(s)	253, 787
MvaI	CCWGG	1 cut(s)	669
MvnI	CGCG	1 cut(s)	838
MwoI	GCNNNNNNNGC	2 cut(s)	395, 722
NdeII	GATC	4 cut(s)	3, 13, 160, 241
NlaIII	CATG	7 cut(s)	108, 196, 203, 479, 523, 577, 664
NlaIV	GGNNCC	4 cut(s)	243, 666, 803, 834
NsbI	TGCGCA	1 cut(s)	582
NsiI	ATGCAT	1 cut(s)	976
NspI	RCATGY	2 cut(s)	479, 523
PaeI	GCATGC	2 cut(s)	479, 523
PaeR7I	CTCGAG	1 cut(s)	390
PceI	AGGCCT	2 cut(s)	78, 795
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	2 cut(s)	253, 787
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	6 cut(s)	449, 482, 560, 677, 871, 943
PkrI	GCNGC	6 cut(s)	136, 178, 277, 388, 420, 868
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	802
PsiI	TTATAA	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	802
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	4 cut(s)	243, 666, 803, 834
PspPI	GGNCC	3 cut(s)	416, 802, 832
PspPPI	RGGWCCY	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	13, 241
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	845
SaqAI	TTAA	3 cut(s)	686, 738, 935
SatI	GCNGC	6 cut(s)	135, 177, 276, 387, 419, 867
Sau3AI	GATC	4 cut(s)	3, 13, 160, 241
Sau96I	GGNCC	3 cut(s)	416, 802, 832
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	669
SfaNI	GCATC	4 cut(s)	214, 303, 725, 805
SfcI	CTRYAG	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	802, 832
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SphI	GCATGC	2 cut(s)	479, 523
Sse9I	AATT	6 cut(s)	88, 231, 338, 527, 786, 964
SseBI	AGGCCT	2 cut(s)	78, 795
SsiI	CCGC	4 cut(s)	276, 386, 419, 836
SspMI	CTAG	1 cut(s)	590
StuI	AGGCCT	2 cut(s)	78, 795
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	3 cut(s)	553, 605, 698
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	311, 391
TasI	AATT	6 cut(s)	88, 231, 338, 527, 786, 964
TatI	WGTACW	1 cut(s)	652
TauI	GCSGC	3 cut(s)	278, 389, 421
TfiI	GAWTC	6 cut(s)	449, 482, 560, 677, 871, 943
Tru1I	TTAA	3 cut(s)	686, 738, 935
Tru9I	TTAA	3 cut(s)	686, 738, 935
TscAI	CASTG	1 cut(s)	608
TseI	GCWGC	3 cut(s)	134, 176, 866
TspDTI	ATGAA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	802, 832
XceI	RCATGY	2 cut(s)	479, 523
XhoI	CTCGAG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	1 cut(s)	590
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.